m6A-centered Disease Response Information
General Information of the Disease (ID: M6ADIS0061)
Name |
Pancreatic cancer
|
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---|---|---|---|---|---|
ICD |
ICD-11: 2C10
|
Full List of Target Gene(s) of This m6A-centered Disease Response
F-box/LRR-repeat protein 5 (FBXL5)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [1] | |||
Response Summary | ALKBH5 overexpression incurred a significant reduction in iron-regulatory protein IRP2 and the modulator of epithelial-mesenchymal transition (EMT) SNAI1. Owing to F-box/LRR-repeat protein 5 (FBXL5)-mediated degradation, ALKBH5 overexpression incurred a significant reduction in iron-regulatory protein IRP2 and the modulator of epithelial-mesenchymal transition (EMT) SNAI1. ALKBH5 in protecting against PDAC through modulating regulators of iron metabolism and underscore the multifaceted role of m6A in pancreatic cancer. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
Target Regulation | Up regulation | |||
Pathway Response | Adherens junction | hsa04520 | ||
Cell Process | Epithelial-mesenchymal transition | |||
In-vitro Model | MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 |
Focal adhesion kinase 1 (Fak)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [2] | |||
Response Summary | WTAP could promote migration/invasion and suppress chemo-sensitivity to gemcitabine in PC. Further mechanical investigation revealed that WTAP could bind to and stabilize Focal adhesion kinase 1 (Fak) mRNA which in turn activated the Fak-PI3K-AKT and Fak-Src-GRB2-Erk1/2 signaling pathways. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Responsed Drug | Gemcitabine | Approved | ||
Target Regulator | Wilms tumor 1-associating protein (WTAP) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Cell Process | RNA stability | |||
In-vitro Model | T3M-4 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_4056 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
hTERT-HPNE | Normal | Homo sapiens | CVCL_C466 | |
HPDE6c7 | Normal | Homo sapiens | CVCL_0P38 | |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
In-vivo Model | Twenty-four female BALB/c athymic nude mice, which were 4-6 weeks old and weighed 20.0-25.0 g, were obtained from the Animal Research Center of PUMCH. WTAP-OE, WTAP-NC, shWTAP and shNC-lentivirus infected MIA PaCa-2 cells (5 × 106) were suspended in 50 uL PBS and then injected subcapsularly into the pancreatic tissue by 1-mL syringes. | |||
GTPase KRas (KRAS)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [3] | |||
Response Summary | UCA1 increases GTPase KRas (KRAS) phosphorylation by interacting with hnRNPA2B1 and that UCA1 functions as a molecular sponge for miR-590-3p to promote KRAS expression. the UCA1-KRAS axis plays a crucial role in pancreatic ductal adenocarcinoma progression and that UCA1 serves as a target for new PDAC therapies. | |||
Responsed Disease | Pancreatic ductal adenocarcinoma [ICD-11: 2C10.0] | |||
Target Regulator | Heterogeneous nuclear ribonucleoproteins A2/B1 (HNRNPA2B1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | Ras signaling pathway | hsa04014 | ||
In-vitro Model | HPDE6c7 | Normal | Homo sapiens | CVCL_0P38 |
HEK293T | Normal | Homo sapiens | CVCL_0063 | |
HPAF-II | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0313 | |
MPanc-96 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_7165 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
PaTu 8902 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1845 | |
PaTu 8988s | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1846 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
In-vivo Model | HPAF-II cells (2.0 × 106 cells/site) stably transfected with sh-EGFP or sh-UCA1 were subcutaneously injected into 4-week-old nude mice to generate xenografts. The tumor volume was measured every week after injection and calculated using the following formula: length × (width2)/2. | |||
Iron-responsive element-binding protein 2 (IRP2)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [1] | |||
Response Summary | ALKBH5 overexpression incurred a significant reduction in iron-regulatory protein Iron-responsive element-binding protein 2 (IRP2) and the modulator of epithelial-mesenchymal transition (EMT) SNAI1. Owing to FBXL5-mediated degradation, ALKBH5 overexpression incurred a significant reduction in iron-regulatory protein IRP2 and the modulator of epithelial-mesenchymal transition (EMT) SNAI1. ALKBH5 in protecting against PDAC through modulating regulators of iron metabolism and underscore the multifaceted role of m6A in pancreatic cancer. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
Target Regulation | Down regulation | |||
Pathway Response | Adherens junction | hsa04520 | ||
Cell Process | Epithelial-mesenchymal transition | |||
In-vitro Model | MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 |
Krueppel-like factor 12 (KLF12)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [4] | |||
Response Summary | LncRNA-PACERR which bound to IGF2BP2 acts as an m6A-dependent manner to enhance the stability of Krueppel-like factor 12 (KLF12) and c-myc in cytoplasm. This study found that LncRNA-PACERR functions as key regulator of TAMs in PDAC microenvironment and revealed the novel mechanisms in cytoplasm and in nucleus. | |||
Responsed Disease | Pancreatic ductal adenocarcinoma [ICD-11: 2C10.0] | |||
Target Regulator | Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | mRNA surveillance pathway | hsa03015 | ||
RNA degradation | hsa03018 | |||
Cell Process | RNA stability | |||
In-vitro Model | THP-1 | Childhood acute monocytic leukemia | Homo sapiens | CVCL_0006 |
PATU-8988 (Human pancreatic adenocarcinoma cell) | ||||
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
HEK293T | Normal | Homo sapiens | CVCL_0063 | |
37 (Pancreatic cancer cell) | ||||
In-vivo Model | BALB/c nude mice which were co-injected with THP-1 cells and PATU-8988 cells subcutaneously. | |||
Mammalian target of rapamycin complex 2 (mTORC2)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [5] | |||
Response Summary | Suppression of METTL14 obviously increased the sensitivity of gemcitabine in resistant cells. This study suggested that METTL14 is a potential target for chemotherapy resistance in pancreatic cancer. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Responsed Drug | Gemcitabine | Approved | ||
Target Regulator | Methyltransferase-like 14 (METTL14) | WRITER | ||
In-vitro Model | PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
Hs 766T | Pancreatic adenocarcinoma | Homo sapiens | CVCL_0334 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
Capan-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0026 | |
In-vivo Model | NOD/SCID mice (6-week-old) were injected (subcutaneously in both flanks) with 5.0 x 106 PANC-1 GemR cells (infected with scr or METTL14 shRNA) per mouse suspended in 50 ul PBS and mixed with equal volume of growth factor reduced matrigel. One week after injection, we started measuring tumor size at the indicated times. Tumor size was calculated by 0.5 × (long diameter) × (short diameter)2. The mice were treated with vehicle or 100 mg/kg gemcitabine intraperitoneally twice a week. | |||
Mutated in multiple advanced cancers 1 (PTEN)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [6] | |||
Response Summary | ALKBH5-mediated m6A demethylation enhanced the stability of KCNK15-AS1. In pancreatic cancer, KCNK15-AS1 bound to KCNK15 to inhibit its translation, and interacted with MDM2 to induce REST ubiquitination, which eventually facilitated Mutated in multiple advanced cancers 1 (PTEN) transcription to inactivate AKT pathway. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
Pathway Response | .PI3K-Akt signaling pathway | hsa04151 | ||
Cell Process | Cell proliferation | |||
Cell migration | ||||
Epithelial-mesenchymal transition | ||||
Cell apoptosis | ||||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
Myc proto-oncogene protein (MYC)
In total 3 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [7] | |||
Response Summary | FTO has been indicated to interact with Myc proto-oncogene protein (MYC) proto-oncogene, bHLH transcription factor and to enhance its stability by decreasing its m6A level.the aforementioned observations indicate a novel mechanism for the regulation of pancreatic cancer cells by FTO | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Fat mass and obesity-associated protein (FTO) | ERASER | ||
Target Regulation | Up regulation | |||
Cell Process | Cell proliferation | |||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
HPDE | Normal | Homo sapiens | CVCL_4376 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
Experiment 2 Reporting the m6A-centered Disease Response by This Target Gene | [4] | |||
Response Summary | LncRNA-PACERR which bound to IGF2BP2 acts as an m6A-dependent manner to enhance the stability of KLF12 and Myc proto-oncogene protein (MYC) in cytoplasm. This study found that LncRNA-PACERR functions as key regulator of TAMs in PDAC microenvironment and revealed the novel mechanisms in cytoplasm and in nucleus. | |||
Responsed Disease | Pancreatic ductal adenocarcinoma [ICD-11: 2C10.0] | |||
Target Regulator | Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | mRNA surveillance pathway | hsa03015 | ||
RNA degradation | hsa03018 | |||
Cell Process | RNA stability | |||
In-vitro Model | THP-1 | Childhood acute monocytic leukemia | Homo sapiens | CVCL_0006 |
PATU-8988 (Human pancreatic adenocarcinoma cell) | ||||
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
HEK293T | Normal | Homo sapiens | CVCL_0063 | |
37 (Pancreatic cancer cell) | ||||
In-vivo Model | BALB/c nude mice which were co-injected with THP-1 cells and PATU-8988 cells subcutaneously. | |||
Experiment 3 Reporting the m6A-centered Disease Response by This Target Gene | [8] | |||
Response Summary | The study revealed important roles for METTL5 in the development of pancreatic cancer and present the METTL5/Myc proto-oncogene protein (MYC) axis as a novel therapeutic strategy for treatment. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Methyltransferase-like 5 (METTL5) | WRITER | ||
Cell Process | Cell proliferation | |||
Cell migration | ||||
Cell invasion | ||||
Nucleobindin-1 (NUCB1)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [9] | |||
Response Summary | METTL3-mediated m6A modification on Nucleobindin-1 (NUCB1) 5'UTR via the reader YTHDF2 as a mechanism for NUCB1 downregulation in PDAC. This study revealed crucial functions of NUCB1 in suppressing proliferation and enhancing the effects of gemcitabine in pancreatic cancer cells. | |||
Responsed Disease | Pancreatic ductal adenocarcinoma [ICD-11: 2C10.0] | |||
Responsed Drug | Gemcitabine | Approved | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Down regulation | |||
Pathway Response | Autophagy | hsa04140 | ||
Cell Process | Cell proliferation | |||
Cell autophagy | ||||
In-vitro Model | SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
HEK293T | Normal | Homo sapiens | CVCL_0063 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
In-vivo Model | 5 × 106 SW1990 cells expressing NUCB1 (oeNUCB1) or control vector (oeNC) were injected subcutaneously. | |||
Experiment 2 Reporting the m6A-centered Disease Response by This Target Gene | [9] | |||
Response Summary | METTL3-mediated m6A modification on Nucleobindin-1 (NUCB1) 5'UTR via the reader YTHDF2 as a mechanism for NUCB1 downregulation in PDAC. This study revealed crucial functions of NUCB1 in suppressing proliferation and enhancing the effects of gemcitabine in pancreatic cancer cells. | |||
Responsed Disease | Pancreatic ductal adenocarcinoma [ICD-11: 2C10.0] | |||
Responsed Drug | Gemcitabine | Approved | ||
Target Regulator | YTH domain-containing family protein 2 (YTHDF2) | READER | ||
Target Regulation | Down regulation | |||
Pathway Response | Autophagy | hsa04140 | ||
Cell Process | Cell proliferation | |||
Cell autophagy | ||||
In-vitro Model | SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
HEK293T | Normal | Homo sapiens | CVCL_0063 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
In-vivo Model | 5 × 106 SW1990 cells expressing NUCB1 (oeNUCB1) or control vector (oeNC) were injected subcutaneously. | |||
p53 apoptosis effector related to PMP-22 (PERP)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [10] | |||
Response Summary | The upregulation of METTL14 leads to the decrease of p53 apoptosis effector related to PMP-22 (PERP) levels via m6A modification, promoting the growth and metastasis of pancreatic cancer; therefore METTL14 is a potential therapeutic target for its treatment. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Methyltransferase-like 14 (METTL14) | WRITER | ||
Target Regulation | Down regulation | |||
In-vitro Model | SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
Panc 03.27 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1635 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
Capan-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0026 | |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
In-vivo Model | For the subcutaneous transplantation model, 100 uL of 1 × 106 cells were injected subcutaneously into the right armpit of BALB/c nude mice. Animal weight and tumor diameter were measured once a week from the time of implantation.For the pancreatic cancer orthotopic implantation model, 200 uL of Panc02-lucifer cells (2 × 107) were injected into the pancreas in mice anesthetized and laparotomized. After 4 weeks, the mice were anesthetized and injected with 150 mg/kg d-luciferin, via the tail vein.For the liver metastasis model, BALB/c nude mice received 2 × 106 cells (in 100 uL DMEM), directly injected into the spleen. Their body weight was measured once a week from the time of implantation. | |||
Period circadian protein homolog 1 (PER1)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [11] | |||
Response Summary | ALKBH5 serves as a pancreatic cancer suppressor by regulating the posttranscriptional activation of Period circadian protein homolog 1 (PER1) through m6A abolishment, which highlights a demethylation-based approach for PC diagnosis and therapy. ALKBH5 loss downregulated PER1 mRNA levels in an m6A-YTHDF2-dependent manner. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
Target Regulation | Up regulation | |||
Pathway Response | p53 signaling pathway | hsa04115 | ||
Cell Process | Cell proliferation | |||
Cell migration | ||||
Cell invasion | ||||
In-vitro Model | AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
HPDE6c7 | Normal | Homo sapiens | CVCL_0P38 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
Experiment 2 Reporting the m6A-centered Disease Response by This Target Gene | [11] | |||
Response Summary | ALKBH5 serves as a pancreatic cancer suppressor by regulating the posttranscriptional activation of Period circadian protein homolog 1 (PER1) through m6A abolishment, which highlights a demethylation-based approach for PC diagnosis and therapy. ALKBH5 loss downregulated PER1 mRNA levels in an m6A-YTHDF2-dependent manner. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | YTH domain-containing family protein 2 (YTHDF2) | READER | ||
Target Regulation | Down regulation | |||
Pathway Response | p53 signaling pathway | hsa04115 | ||
Cell Process | Cell proliferation | |||
Cell migration | ||||
Cell invasion | ||||
In-vitro Model | AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
HPDE6c7 | Normal | Homo sapiens | CVCL_0P38 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
PHD finger protein 10 (PHF10)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [12] | |||
Response Summary | DNA damage repair is a major barrier for chemotherapy efficacy of pancreatic cancer, it's the first time that PHD finger protein 10 (PHF10) was found and involved in the DNA damage response. ZC3H13 knockdown downregulated the m6A methylation of PHF10 and decreased PHF10 translation in a YTHDF1-dependent manner. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Zinc finger CCCH domain-containing protein 13 (ZC3H13) | WRITER | ||
Target Regulation | Down regulation | |||
Pathway Response | Homologous recombination | hsa03440 | ||
Cell Process | Homologous recombination | |||
DNA double strand breaks | ||||
In-vitro Model | PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
hTERT-HPNE | Normal | Homo sapiens | CVCL_C466 | |
DR-GFP-U2OS (DR-GFP-U2OS cells used for HR assay were generously provided by Huang Lab (Zhejiang University)) | ||||
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
PI3-kinase subunit beta (PIK3CB)
In total 4 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [13] | |||
Response Summary | N6-methyladenosine mRNA methylation of PIK3CB regulates AKT signalling to promote PTEN-deficient pancreatic cancer progression. Rs142933486 is significantly associated with the overall survival of PDAC by reducing the PIK3CB m6A level, which facilitated its mRNA and protein expression levels mediated by the m6A 'writer' complex (METTL13/METTL14/WTAP) and the m6A 'reader' YTHDF2. KIN-193, a PI3-kinase subunit beta (PIK3CB)-selective inhibitor, is shown to serve as an effective anticancer agent for blocking PTEN-deficient PDAC. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Responsed Drug | AZD6482 | Terminated | ||
Target Regulator | Methyltransferase-like 13 (METTL13) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Glycolysis / Gluconeogenesis | hsa00010 | |||
Cell Process | Glucose metabolism | |||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
In-vivo Model | Established cohorts of mice bearing tumour xenografts driven by PTEN-deficient BxPC-3 and PANC-1 cells with PIK3CB overexpression. When tumours grew to ~300 mm3, mice were grouped and administered with vehicle (DMSO) or KIN-193 via intraperitoneal injection (20 mg/kg) once daily. | |||
Experiment 2 Reporting the m6A-centered Disease Response by This Target Gene | [13] | |||
Response Summary | N6-methyladenosine mRNA methylation of PIK3CB regulates AKT signalling to promote PTEN-deficient pancreatic cancer progression. Rs142933486 is significantly associated with the overall survival of PDAC by reducing the PIK3CB m6A level, which facilitated its mRNA and protein expression levels mediated by the m6A 'writer' complex (METTL13/METTL14/WTAP) and the m6A 'reader' YTHDF2. KIN-193, a PI3-kinase subunit beta (PIK3CB)-selective inhibitor, is shown to serve as an effective anticancer agent for blocking PTEN-deficient PDAC. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Responsed Drug | AZD6482 | Terminated | ||
Target Regulator | Methyltransferase-like 14 (METTL14) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Glycolysis / Gluconeogenesis | hsa00010 | |||
Cell Process | Glucose metabolism | |||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
In-vivo Model | Established cohorts of mice bearing tumour xenografts driven by PTEN-deficient BxPC-3 and PANC-1 cells with PIK3CB overexpression. When tumours grew to ~300 mm3, mice were grouped and administered with vehicle (DMSO) or KIN-193 via intraperitoneal injection (20 mg/kg) once daily. | |||
Experiment 3 Reporting the m6A-centered Disease Response by This Target Gene | [13] | |||
Response Summary | N6-methyladenosine mRNA methylation of PIK3CB regulates AKT signalling to promote PTEN-deficient pancreatic cancer progression. Rs142933486 is significantly associated with the overall survival of PDAC by reducing the PIK3CB m6A level, which facilitated its mRNA and protein expression levels mediated by the m6A 'writer' complex (METTL13/METTL14/WTAP) and the m6A 'reader' YTHDF2. KIN-193, a PI3-kinase subunit beta (PIK3CB)-selective inhibitor, is shown to serve as an effective anticancer agent for blocking PTEN-deficient PDAC. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Responsed Drug | AZD6482 | Terminated | ||
Target Regulator | Wilms tumor 1-associating protein (WTAP) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Glycolysis / Gluconeogenesis | hsa00010 | |||
Cell Process | Glucose metabolism | |||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
In-vivo Model | Established cohorts of mice bearing tumour xenografts driven by PTEN-deficient BxPC-3 and PANC-1 cells with PIK3CB overexpression. When tumours grew to ~300 mm3, mice were grouped and administered with vehicle (DMSO) or KIN-193 via intraperitoneal injection (20 mg/kg) once daily. | |||
Experiment 4 Reporting the m6A-centered Disease Response by This Target Gene | [13] | |||
Response Summary | N6-methyladenosine mRNA methylation of PIK3CB regulates AKT signalling to promote PTEN-deficient pancreatic cancer progression. Rs142933486 is significantly associated with the overall survival of PDAC by reducing the PIK3CB m6A level, which facilitated its mRNA and protein expression levels mediated by the m6A 'writer' complex (METTL13/METTL14/WTAP) and the m6A 'reader' YTHDF2. KIN-193, a PI3-kinase subunit beta (PIK3CB)-selective inhibitor, is shown to serve as an effective anticancer agent for blocking PTEN-deficient PDAC. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Responsed Drug | AZD6482 | Terminated | ||
Target Regulator | YTH domain-containing family protein 2 (YTHDF2) | READER | ||
Target Regulation | Down regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Glycolysis / Gluconeogenesis | hsa00010 | |||
Cell Process | Glucose metabolism | |||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
In-vivo Model | Established cohorts of mice bearing tumour xenografts driven by PTEN-deficient BxPC-3 and PANC-1 cells with PIK3CB overexpression. When tumours grew to ~300 mm3, mice were grouped and administered with vehicle (DMSO) or KIN-193 via intraperitoneal injection (20 mg/kg) once daily. | |||
Platelet-derived growth factor C (PDGFC)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [14] | |||
Response Summary | FTO downregulation leads to increased m6A modifications in the 3' UTR of Platelet-derived growth factor C (PDGFC) and then modulates the degradation of its transcriptional level in an m6A-YTHDF2-dependent manner, highlighting a potential therapeutic target for PDAC treatment and prognostic prediction. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Fat mass and obesity-associated protein (FTO) | ERASER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
In-vitro Model | SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
HPDE | Normal | Homo sapiens | CVCL_4376 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
Capan-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0237 | |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
HEK293T | Normal | Homo sapiens | CVCL_0063 | |
In-vivo Model | The right flanks of mice were injected subcutaneously with 2 × 106 MiaPaCa-2 cells stably expressing shFTO and a scrambled shRNA in 100 uL PBS. Tumors were measured using an external caliper once per week, and tumor volume was calculated with the formula: (length × width2)/2. | |||
Experiment 2 Reporting the m6A-centered Disease Response by This Target Gene | [14] | |||
Response Summary | FTO downregulation leads to increased m6A modifications in the 3' UTR of Platelet-derived growth factor C (PDGFC) and then modulates the degradation of its transcriptional level in an m6A-YTHDF2-dependent manner, highlighting a potential therapeutic target for PDAC treatment and prognostic prediction. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | YTH domain-containing family protein 2 (YTHDF2) | READER | ||
Target Regulation | Down regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
In-vitro Model | SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
HPDE | Normal | Homo sapiens | CVCL_4376 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
Capan-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0237 | |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
HEK293T | Normal | Homo sapiens | CVCL_0063 | |
In-vivo Model | The right flanks of mice were injected subcutaneously with 2 × 106 MiaPaCa-2 cells stably expressing shFTO and a scrambled shRNA in 100 uL PBS. Tumors were measured using an external caliper once per week, and tumor volume was calculated with the formula: (length × width2)/2. | |||
Putative uncharacterized protein DANCR (DANCR)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [15] | |||
Response Summary | IGF2BP2 functions in partnerships with Putative uncharacterized protein DANCR (DANCR) to regulate its stability. In tumor cells, IGF2BP2 is upregulated, which increases the chance of IGF2PB2 to interact with and stabilize DANCR.DANCR is a novel target for IGF2BP2 through m6A modification, and IGF2BP2 and DANCR work together to promote cancer stemness-like properties and pancreatic cancer pathogenesis. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) | READER | ||
Target Regulation | Up regulation | |||
Cell Process | Cell proliferation | |||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
In-vivo Model | DANCR KO or empty vector control were harvested and then mixed with matrigel (1:1) (BD Biosciences). Three different numbers of cells (1 × 104, 1 × 105, and 5 × 105 cells) were subcutaneously injected into nude mice, five animals per group. | |||
RAC-alpha serine/threonine-protein kinase (AKT1)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [6] | |||
Response Summary | ALKBH5-mediated m6A demethylation enhanced the stability of KCNK15-AS1. In pancreatic cancer, KCNK15-AS1 bound to KCNK15 to inhibit its translation, and interacted with MDM2 to induce REST ubiquitination, which eventually facilitated PTEN transcription to inactivate RAC-alpha serine/threonine-protein kinase (AKT1) pathway. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
Pathway Response | Apoptosis | hsa04210 | ||
PI3K-Akt signaling pathway | hsa04151 | |||
Cell Process | Cell proliferation | |||
Cell migration | ||||
Epithelial-mesenchymal transition | ||||
Cell apoptosis | ||||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
Serine/arginine-rich splicing factor 3 (SRSF3)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [16] | |||
Response Summary | Serine/arginine-rich splicing factor 3 (SRSF3) promotes gemcitabine resistance by regulating ANRIL's splicing and ANRIL-208 (one of the ANRIL spliceosomes) can enhance DNA homologous recombination repair (HR) capacity by forming a complex with Ring1b and EZH2. Demonstrates that abnormal alternative splicing and m6A modification are closely related to chemotherapy resistance in pancreatic cancer. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Responsed Drug | Gemcitabine | Approved | ||
Pathway Response | mRNA surveillance pathway | hsa03015 | ||
Cell Process | mRNA alternative splicing | |||
In-vitro Model | PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
In-vivo Model | Gemcitabine-resistant Panc1 cells (Panc1-GR) were prepared as stable luciferase clones after transduction with CTRL or shSRSF3 or sh-ANRIL-L vector or SRSF3 or ANRIL-L. For the PDX models, pieces of fresh human pancreatic cancer tissues were transplanted subcutaneously into the axilla of 4-6 week-old NOD/SCID mice. | |||
Tissue factor pathway inhibitor 2 (TFPI-2)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [17] | |||
Response Summary | Knockdown of FTO increases m6A methylation of Tissue factor pathway inhibitor 2 (TFPI-2) mRNA in PC cells, thereby increasing mRNA stability via the m6A reader YTHDF1. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Fat mass and obesity-associated protein (FTO) | ERASER | ||
Target Regulation | Down regulation | |||
Cell Process | Cell growth | |||
cell migration | ||||
cell invasion | ||||
Experiment 2 Reporting the m6A-centered Disease Response by This Target Gene | [17] | |||
Response Summary | Knockdown of FTO increases m6A methylation of Tissue factor pathway inhibitor 2 (TFPI-2) mRNA in PC cells, thereby increasing mRNA stability via the m6A reader YTHDF1. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | YTH domain-containing family protein 1 (YTHDF1) | READER | ||
Target Regulation | Up regulation | |||
Cell Process | Cell growth | |||
cell migration | ||||
cell invasion | ||||
Transcription factor E2F3 (E2F3)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [18] | |||
Response Summary | LINC00857/miR-150-5p/E2F3 regulatory axis is taken as an alternative therapeutic target for treating pancreatic Cancer. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulation | Up regulation | |||
Cell Process | Cell apoptosis | |||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
Capan-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0026 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
HPDE | Normal | Homo sapiens | CVCL_4376 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
Transcriptional coactivator YAP1 (YAP1)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [19] | |||
Response Summary | YTHDF2 knockdown significantly increases the total YAP expression, but inhibits TGF-beta/Smad signaling, indicating that YTHDF2 regulates EMT probably via Transcriptional coactivator YAP1 (YAP1) signaling. YTHDF2 is a new predictive biomarker of development of pancreatic cancer. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | YTH domain-containing family protein 2 (YTHDF2) | READER | ||
Target Regulation | Down regulation | |||
Pathway Response | Hippo signaling pathway | hsa04390 | ||
Cell Process | Cells proliferation | |||
Cells migration | ||||
Cells invasion | ||||
Epithelial-mesenchymal transition | ||||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
PaTu 8988s | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1846 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
Wnt inhibitory factor 1 (WIF1)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [20] | |||
Response Summary | ALKBH5 overexpression sensitizes Pancreatic cancer cells to gemcitabine treatment, and it represses PDAC tumorigenesis by reducing m6A levels of Wnt inhibitory factor 1 (WIF1) and hindering activation of Wnt signaling. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Responsed Drug | Gemcitabine | Approved | ||
Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
Target Regulation | Up regulation | |||
Pathway Response | Wnt signaling pathway | hsa04310 | ||
In-vitro Model | AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
Capan-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0237 | |
Capan-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0026 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
HPDE6c7 | Normal | Homo sapiens | CVCL_0P38 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
Zinc finger protein SNAI1 (SNAI1)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [1] | |||
Response Summary | ALKBH5 overexpression incurred a significant reduction in iron-regulatory protein IRP2 and the modulator of epithelial-mesenchymal transition (EMT) Zinc finger protein SNAI1 (SNAI1). Owing to FBXL5-mediated degradation, ALKBH5 overexpression incurred a significant reduction in iron-regulatory protein IRP2 and the modulator of epithelial-mesenchymal transition (EMT) SNAI1. ALKBH5 in protecting against PDAC through modulating regulators of iron metabolism and underscore the multifaceted role of m6A in pancreatic cancer. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
Target Regulation | Down regulation | |||
Pathway Response | Adherens junction | hsa04520 | ||
Cell Process | Epithelial-mesenchymal transition | |||
In-vitro Model | MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 |
DBH antisense RNA 1 (Lnc_DBH-AS1)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [21] | |||
Response Summary | DBH antisense RNA 1 (Lnc_DBH-AS1) expression in pancreatic cancer(PC) was found to be linked to the METTL3-dependent m6A methylation of the lncRNA. MechanisticallyDBH-AS1 was able to increase PC cell sensitivity to gemcitabine by sequestering miR-3163 and thus upregulating USP44 in these tumor cells. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Responsed Drug | Gemcitabine | Approved | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
In-vitro Model | MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 |
HPDE | Normal | Homo sapiens | CVCL_4376 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
Canpan-2 (Pancreatic cancer cell line) | ||||
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
KCNK15 and WISP2 antisense RNA 1 (KCNK15-AS1)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [22] | |||
Response Summary | ALKBH5 inhibits pancreatic cancer motility by demethylating lncRNA KCNK15 and WISP2 antisense RNA 1 (KCNK15-AS1). | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
Target Regulation | Up regulation | |||
Cell Process | Epithelial-mesenchymal transition | |||
Cell migration and invasion | ||||
In-vitro Model | HEK293T | Normal | Homo sapiens | CVCL_0063 |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
HPDE6c7 | Normal | Homo sapiens | CVCL_0P38 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
Experiment 2 Reporting the m6A-centered Disease Response by This Target Gene | [6] | |||
Response Summary | ALKBH5-mediated m6A demethylation enhanced the stability of KCNK15-AS1. In pancreatic cancer, KCNK15 and WISP2 antisense RNA 1 (KCNK15-AS1) bound to KCNK15 to inhibit its translation, and interacted with MDM2 to induce REST ubiquitination, which eventually facilitated PTEN transcription to inactivate AKT pathway. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
Target Regulation | Up regulation | |||
Cell Process | Cell proliferation | |||
Cell migration | ||||
Epithelial-mesenchymal transition | ||||
Cell apoptosis | ||||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
LIFR antisense RNA 1 (LIFR-AS1)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [23] | |||
Response Summary | METTL3 induced m6A hyper-methylation on the 3' UTR of LIFR antisense RNA 1 (LIFR-AS1) to enhance its mRNA stability and LIFR-AS1 could directly interact with miR-150-5p, thereby indirectly up-regulating VEGFA expressions within cells. A noval m6A-LIFR-AS1 axis promotes pancreatic cancer progression at least in part via regulation of the miR-150-5p/VEGFA axis, indicating that this regulatory axis can be a viable clinical target for the treatment of pancreatic cancer. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Cell Process | Cell proliferation and metastasis | |||
Long intergenic non-protein coding RNA 857 (LINC00857)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [18] | |||
Response Summary | LINC00857/miR-150-5p/E2F3 regulatory axis is taken as an alternative therapeutic target for treating pancreatic Cancer. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Cell Process | RNA stability | |||
Cell apoptosis | ||||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
Capan-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0026 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
HPDE | Normal | Homo sapiens | CVCL_4376 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
PTGS2 antisense RNA 1 (PACERR)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [4] | |||
Response Summary | PTGS2 antisense RNA 1 (PACERR) which bound to IGF2BP2 acts as an m6A-dependent manner to enhance the stability of KLF12 and c-myc in cytoplasm. This study found that LncRNA-PACERR functions as key regulator of TAMs in PDAC microenvironment and revealed the novel mechanisms in cytoplasm and in nucleus. | |||
Responsed Disease | Pancreatic ductal adenocarcinoma [ICD-11: 2C10.0] | |||
Target Regulator | Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | mRNA surveillance pathway | hsa03015 | ||
RNA degradation | hsa03018 | |||
Cell Process | RNA stability | |||
In-vitro Model | THP-1 | Childhood acute monocytic leukemia | Homo sapiens | CVCL_0006 |
PATU-8988 (Human pancreatic adenocarcinoma cell) | ||||
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
HEK293T | Normal | Homo sapiens | CVCL_0063 | |
37 (Pancreatic cancer cell) | ||||
In-vivo Model | BALB/c nude mice which were co-injected with THP-1 cells and PATU-8988 cells subcutaneously. | |||
Urothelial cancer associated 1 (UCA1)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [3] | |||
Response Summary | Urothelial cancer associated 1 (UCA1) increases KRAS phosphorylation by interacting with hnRNPA2B1 and that UCA1 functions as a molecular sponge for miR-590-3p to promote KRAS expression. the UCA1-KRAS axis plays a crucial role in pancreatic ductal adenocarcinoma progression and that UCA1 serves as a target for new PDAC therapies. | |||
Responsed Disease | Pancreatic ductal adenocarcinoma [ICD-11: 2C10.0] | |||
Target Regulator | Heterogeneous nuclear ribonucleoproteins A2/B1 (HNRNPA2B1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | Ras signaling pathway | hsa04014 | ||
In-vitro Model | HPDE6c7 | Normal | Homo sapiens | CVCL_0P38 |
HEK293T | Normal | Homo sapiens | CVCL_0063 | |
HPAF-II | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0313 | |
MPanc-96 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_7165 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
PaTu 8902 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1845 | |
PaTu 8988s | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1846 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
In-vivo Model | HPAF-II cells (2.0 × 106 cells/site) stably transfected with sh-EGFP or sh-UCA1 were subcutaneously injected into 4-week-old nude mice to generate xenografts. The tumor volume was measured every week after injection and calculated using the following formula: length × (width2)/2. | |||
microRNA 25 (MIR25)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [24] | |||
Response Summary | Cigarette smoke-induced microRNA 25 (MIR25) excessive maturation via m6A modification promotes the development and progression of pancreatic cancer. This modification is catalyzed by overexpressed methyltransferase-like 3 (METTL3) due to hypomethylation of the METTL3 promoter also caused by CSC. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Cell Process | Cell proliferation | |||
In-vitro Model | HEK293T | Normal | Homo sapiens | CVCL_0063 |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
HPDE6c7 | Normal | Homo sapiens | CVCL_0P38 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
In-vivo Model | Mice (five in each group) were injected subcutaneously with 0.1 ml of cell suspension containing 2 × 106 cells in the back flank. | |||
hsa-miR-150-5p
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [18] | |||
Response Summary | LINC00857/miR-150-5p/E2F3 regulatory axis is taken as an alternative therapeutic target for treating pancreatic Cancer. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulation | Up regulation | |||
Cell Process | Cell apoptosis | |||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
Capan-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0026 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
HPDE | Normal | Homo sapiens | CVCL_4376 | |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
hsa-miR-183-3p
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [25] | |||
Response Summary | rs7495 in 3'UTR of hnRNPC was associated with pancreatic ductal adenocarcinoma susceptibility in a Chinese population. The rs7495, in the hnRNPC 3'UTR, might disrupt a binding site for hsa-miR-183-3p, thus increasing the expression of hnRNPC and promoting the proliferation of PDAC cells. | |||
Responsed Disease | Pancreatic ductal adenocarcinoma [ICD-11: 2C10.0] | |||
Target Regulator | Heterogeneous nuclear ribonucleoproteins C1/C2 (HNRNPC) | READER | ||
Target Regulation | Down regulation | |||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
hsa-miR-30d
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [26] | |||
Response Summary | MiR-30d is a novel target for YTHDC1 through m6A modification, and hsa-miR-30d represses pancreatic ductal adenocarcinoma tumorigenesis via suppressing aerobic glycolysis. | |||
Responsed Disease | Pancreatic ductal adenocarcinoma [ICD-11: 2C10.0] | |||
Target Regulator | YTH domain-containing protein 1 (YTHDC1) | READER | ||
Pathway Response | Central carbon metabolism in cancer | hsa05230 | ||
Glycolysis / Gluconeogenesis | hsa00010 | |||
Cell Process | Glycolysis | |||
In-vitro Model | SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
HPNE (Pancreatic ductal adenocarcinoma cell line HPNE were a gift from Dr. Lingye Tao from Renji hospital) | ||||
HPAC | Pancreatic adenocarcinoma | Homo sapiens | CVCL_3517 | |
CFPAC-1 | Cystic fibrosis | Homo sapiens | CVCL_1119 | |
Capan-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0026 | |
Capan-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0237 | |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
In-vivo Model | To study the effect of miR-30d on liver metastasis of PDACs, 5 × 106 cells in 50 uL of PBS were injected into the spleens of nude mice (6 mice per group). Anesthetized mice were injected intraperitoneally with D-luciferin (150 mg/kg) every other week and imaged using an IVIS 100 imaging system (Xenogen, CA, USA) 10?min after the injection. The mice were sacrificed and their liver metastases were checked by standard histological examination 8-9 weeks after injection. | |||
hsa-miR-380-3p
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [27] | |||
Response Summary | hsa-miR-380-3p was enriched with m6A modifications, and elimination of m6A modifications by deleting METTL3 and METTL14 synergistically suppressed miR-380-3p expressions in pancreatic cancer cells. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Cell Process | Epithelial-mesenchymal transition | |||
In-vitro Model | HPDE | Normal | Homo sapiens | CVCL_4376 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
Capan-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0026 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
In-vivo Model | The PC cell line PANC1 was subcutaneously injected into the dorsal flank of the mice at the concentration of 1 × 106 cells per mouse. | |||
Experiment 2 Reporting the m6A-centered Disease Response by This Target Gene | [27] | |||
Response Summary | hsa-miR-380-3p was enriched with m6A modifications, and elimination of m6A modifications by deleting METTL3 and METTL14 synergistically suppressed miR-380-3p expressions in pancreatic cancer cells. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | Methyltransferase-like 14 (METTL14) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Cell Process | Epithelial-mesenchymal transition | |||
In-vitro Model | HPDE | Normal | Homo sapiens | CVCL_4376 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
Capan-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0026 | |
SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
In-vivo Model | The PC cell line PANC1 was subcutaneously injected into the dorsal flank of the mice at the concentration of 1 × 106 cells per mouse. | |||
hsa-miR-5586-5p
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [28] | |||
Response Summary | Theses results implicate a negative feedback of m6A reader YTHDF3 and glycolytic lncRNA DICER1-AS1 is involved in glycolysis and tumorigenesis of pancreatic cancer. YTHDF3 and lncRNA DICER1-AS1 promotes glycolysis of pancreatic cancer through inhibiting maturation of hsa-miR-5586-5p. | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Target Regulator | YTH domain-containing family protein 3 (YTHDF3) | READER | ||
Pathway Response | Glycolysis / Gluconeogenesis | hsa00010 | ||
Cell Process | Glycolysis | |||
In-vitro Model | SW1990 | Pancreatic adenocarcinoma | Homo sapiens | CVCL_1723 |
PANC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | |
HPDE | Normal | Homo sapiens | CVCL_4376 | |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 | |
AsPC-1 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0152 | |
References