m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR00665)
Target Name Platelet-derived growth factor C (PDGFC)
Synonyms
PDGF-C; Fallotein; Spinal cord-derived growth factor; SCDGF; VEGF-E
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Gene Name PDGFC
Chromosomal Location 4q32.1
Family PDGF/VEGF growth factor family
Function
Growth factor that plays an essential role in the regulation of embryonic development, cell proliferation, cell migration, survival and chemotaxis. Potent mitogen and chemoattractant for cells of mesenchymal origin. Required for normal skeleton formation during embryonic development, especially for normal development of the craniofacial skeleton and for normal development of the palate. Required for normal skin morphogenesis during embryonic development. Plays an important role in wound healing, where it appears to be involved in three stages: inflammation, proliferation and remodeling. Plays an important role in angiogenesis and blood vessel development. Involved in fibrotic processes, in which transformation of interstitial fibroblasts into myofibroblasts plus collagen deposition occurs. The CUB domain has mitogenic activity in coronary artery smooth muscle cells, suggesting a role beyond the maintenance of the latency of the PDGF domain. In the nucleus, PDGFC seems to have additional function.
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Gene ID 56034
Uniprot ID
PDGFC_HUMAN
HGNC ID
HGNC:8801
KEGG ID
hsa:56034
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
PDGFC can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
YTH domain-containing family protein 2 (YTHDF2) [READER]
 Regulator Info 
Representative RNA-seq result indicating the expression of this target gene regulated by YTHDF2
Cell Line GSC11 cell line Homo sapiens
Treatment: siYTHDF2 GSC11 cells
Control: siControl GSC11 cells
 GSE142825
Regulation
logFC: 8.71E-01
p-value: 1.24E-12
More Results Click to View More RNA-seq Results
Representative RIP-seq result supporting the interaction between PDGFC and the regulator
Cell Line Hela Homo sapiens
Regulation logFC: 1.41E+00 GSE49339
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary FTO downregulation leads to increased m6A modifications in the 3' UTR of Platelet-derived growth factor C (PDGFC) and then modulates the degradation of its transcriptional level in an m6A-YTHDF2-dependent manner, highlighting a potential therapeutic target for PDAC treatment and prognostic prediction.
Target Regulation Down regulation
Responsed Disease Pancreatic cancer ICD-11: 2C10
 Disease Info 
Pathway Response PI3K-Akt signaling pathway hsa04151
In-vitro Model SW1990 Pancreatic adenocarcinoma Homo sapiens CVCL_1723
PANC-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0480
MIA PaCa-2 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0428
HPDE Normal Homo sapiens CVCL_4376
CFPAC-1 Cystic fibrosis Homo sapiens CVCL_1119
Capan-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0237
BxPC-3 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0186
AsPC-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0152
HEK293T Normal Homo sapiens CVCL_0063
In-vivo Model The right flanks of mice were injected subcutaneously with 2 × 106 MiaPaCa-2 cells stably expressing shFTO and a scrambled shRNA in 100 uL PBS. Tumors were measured using an external caliper once per week, and tumor volume was calculated with the formula: (length × width2)/2.
Fat mass and obesity-associated protein (FTO) [ERASER]
 Regulator Info 
Representative RNA-seq result indicating the expression of this target gene regulated by FTO
Cell Line 253J cell line Homo sapiens
Treatment: siFTO 253J cells
Control: 253J cells
 GSE150239
Regulation
logFC: 8.37E+00
p-value: 3.21E-02
More Results Click to View More RNA-seq Results
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary FTO downregulation leads to increased m6A modifications in the 3' UTR of Platelet-derived growth factor C (PDGFC) and then modulates the degradation of its transcriptional level in an m6A-YTHDF2-dependent manner, highlighting a potential therapeutic target for PDAC treatment and prognostic prediction.
Target Regulation Up regulation
Responsed Disease Pancreatic cancer ICD-11: 2C10
 Disease Info 
Pathway Response PI3K-Akt signaling pathway hsa04151
In-vitro Model SW1990 Pancreatic adenocarcinoma Homo sapiens CVCL_1723
PANC-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0480
MIA PaCa-2 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0428
HPDE Normal Homo sapiens CVCL_4376
CFPAC-1 Cystic fibrosis Homo sapiens CVCL_1119
Capan-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0237
BxPC-3 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0186
AsPC-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0152
HEK293T Normal Homo sapiens CVCL_0063
In-vivo Model The right flanks of mice were injected subcutaneously with 2 × 106 MiaPaCa-2 cells stably expressing shFTO and a scrambled shRNA in 100 uL PBS. Tumors were measured using an external caliper once per week, and tumor volume was calculated with the formula: (length × width2)/2.
Pancreatic cancer [ICD-11: 2C10]
 Disease Info 
In total 2 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary FTO downregulation leads to increased m6A modifications in the 3' UTR of Platelet-derived growth factor C (PDGFC) and then modulates the degradation of its transcriptional level in an m6A-YTHDF2-dependent manner, highlighting a potential therapeutic target for PDAC treatment and prognostic prediction.
Responsed Disease Pancreatic cancer [ICD-11: 2C10]
Target Regulator Fat mass and obesity-associated protein (FTO) ERASER
 Regulator Info 
Target Regulation Up regulation
Pathway Response PI3K-Akt signaling pathway hsa04151
In-vitro Model SW1990 Pancreatic adenocarcinoma Homo sapiens CVCL_1723
PANC-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0480
MIA PaCa-2 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0428
HPDE Normal Homo sapiens CVCL_4376
CFPAC-1 Cystic fibrosis Homo sapiens CVCL_1119
Capan-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0237
BxPC-3 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0186
AsPC-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0152
HEK293T Normal Homo sapiens CVCL_0063
In-vivo Model The right flanks of mice were injected subcutaneously with 2 × 106 MiaPaCa-2 cells stably expressing shFTO and a scrambled shRNA in 100 uL PBS. Tumors were measured using an external caliper once per week, and tumor volume was calculated with the formula: (length × width2)/2.
Experiment 2 Reporting the m6A-centered Disease Response [1]
Response Summary FTO downregulation leads to increased m6A modifications in the 3' UTR of Platelet-derived growth factor C (PDGFC) and then modulates the degradation of its transcriptional level in an m6A-YTHDF2-dependent manner, highlighting a potential therapeutic target for PDAC treatment and prognostic prediction.
Responsed Disease Pancreatic cancer [ICD-11: 2C10]
Target Regulator YTH domain-containing family protein 2 (YTHDF2) READER
 Regulator Info 
Target Regulation Down regulation
Pathway Response PI3K-Akt signaling pathway hsa04151
In-vitro Model SW1990 Pancreatic adenocarcinoma Homo sapiens CVCL_1723
PANC-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0480
MIA PaCa-2 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0428
HPDE Normal Homo sapiens CVCL_4376
CFPAC-1 Cystic fibrosis Homo sapiens CVCL_1119
Capan-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0237
BxPC-3 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0186
AsPC-1 Pancreatic ductal adenocarcinoma Homo sapiens CVCL_0152
HEK293T Normal Homo sapiens CVCL_0063
In-vivo Model The right flanks of mice were injected subcutaneously with 2 × 106 MiaPaCa-2 cells stably expressing shFTO and a scrambled shRNA in 100 uL PBS. Tumors were measured using an external caliper once per week, and tumor volume was calculated with the formula: (length × width2)/2.
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00665)
Platelet-derived growth factor C (PDGFC)
Adenosine-to-Inosine editing (A-to-I)
In total 7 m6A sequence/site(s) in this target gene
mod ID: A2ISITE000628 Click to Show/Hide the Full List
mod site chr4:156766529-156766530:- [2]
Sequence TTTTGTAAAATTTAAAGTTGACTTTTCAAGAAGGATGGTTT
Transcript ID List ENST00000504672.5; ENST00000506880.5; ENST00000274071.6; ENST00000502773.6; ENST00000422544.2
External Link RMBase: RNA-editing_site_107124
mod ID: A2ISITE000629 Click to Show/Hide the Full List
mod site chr4:156766535-156766536:- [2]
Sequence TAAAGGTTTTGTAAAATTTAAAGTTGACTTTTCAAGAAGGA
Transcript ID List ENST00000502773.6; ENST00000506880.5; ENST00000422544.2; ENST00000504672.5; ENST00000274071.6
External Link RMBase: RNA-editing_site_107125
mod ID: A2ISITE000630 Click to Show/Hide the Full List
mod site chr4:156766542-156766543:- [2]
Sequence TGTAATTTAAAGGTTTTGTAAAATTTAAAGTTGACTTTTCA
Transcript ID List ENST00000502773.6; ENST00000274071.6; ENST00000506880.5; ENST00000422544.2; ENST00000504672.5
External Link RMBase: RNA-editing_site_107126
mod ID: A2ISITE000631 Click to Show/Hide the Full List
mod site chr4:156766543-156766544:- [2]
Sequence GTGTAATTTAAAGGTTTTGTAAAATTTAAAGTTGACTTTTC
Transcript ID List ENST00000502773.6; ENST00000422544.2; ENST00000506880.5; ENST00000504672.5; ENST00000274071.6
External Link RMBase: RNA-editing_site_107127
mod ID: A2ISITE000632 Click to Show/Hide the Full List
mod site chr4:156767025-156767026:- [2]
Sequence TTCTACAAAACATTAACATTAGACCAAGTCAAAATCTGCCC
Transcript ID List ENST00000274071.6; ENST00000504672.5; ENST00000422544.2; ENST00000502773.6; ENST00000506880.5
External Link RMBase: RNA-editing_site_107128
mod ID: A2ISITE000633 Click to Show/Hide the Full List
mod site chr4:156767124-156767125:- [2]
Sequence GTGATGGAGTCTCCCAATTAAATCCCAACACCTCCCCCAGC
Transcript ID List ENST00000274071.6; ENST00000502773.6; ENST00000422544.2; ENST00000506880.5; ENST00000504672.5
External Link RMBase: RNA-editing_site_107129
mod ID: A2ISITE000634 Click to Show/Hide the Full List
mod site chr4:156767125-156767126:- [2]
Sequence AGTGATGGAGTCTCCCAATTAAATCCCAACACCTCCCCCAG
Transcript ID List ENST00000506880.5; ENST00000504672.5; ENST00000274071.6; ENST00000502773.6; ENST00000422544.2
External Link RMBase: RNA-editing_site_107130
5-methylcytidine (m5C)
In total 5 m6A sequence/site(s) in this target gene
mod ID: M5CSITE003351 Click to Show/Hide the Full List
mod site chr4:156971508-156971509:- [3]
Sequence CGCCCGGGCCGCCGTCGGCCCGGAGCCCCCCGGCCCCGCTC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m5C_site_34420
mod ID: M5CSITE003352 Click to Show/Hide the Full List
mod site chr4:156971509-156971510:- [3]
Sequence GCGCCCGGGCCGCCGTCGGCCCGGAGCCCCCCGGCCCCGCT
Seq Type List Bisulfite-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m5C_site_34421
mod ID: M5CSITE003353 Click to Show/Hide the Full List
mod site chr4:156971510-156971511:- [3]
Sequence TGCGCCCGGGCCGCCGTCGGCCCGGAGCCCCCCGGCCCCGC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m5C_site_34422
mod ID: M5CSITE003354 Click to Show/Hide the Full List
mod site chr4:156971519-156971520:- [3]
Sequence CTCTCCGCCTGCGCCCGGGCCGCCGTCGGCCCGGAGCCCCC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m5C_site_34423
mod ID: M5CSITE003355 Click to Show/Hide the Full List
mod site chr4:156971520-156971521:- [3]
Sequence TCTCTCCGCCTGCGCCCGGGCCGCCGTCGGCCCGGAGCCCC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m5C_site_34424
N6-methyladenosine (m6A)
In total 46 m6A sequence/site(s) in this target gene
mod ID: M6ASITE068553 Click to Show/Hide the Full List
mod site chr4:156761578-156761579:- [4]
Sequence GCTCAAGATTTATTTCTTGGACTCTGAGAAAATGAAAGATA
Motif Score 4.065041667
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m6A_site_655240
mod ID: M6ASITE068554 Click to Show/Hide the Full List
mod site chr4:156761874-156761875:- [5]
Sequence TGCTGTGCTGTGCAGTAGGAACACATCCTATTTATTGTGAT
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655241
mod ID: M6ASITE068555 Click to Show/Hide the Full List
mod site chr4:156761939-156761940:- [5]
Sequence TCTGAGCCTAGCTCAGAAAAACATAAAGCACCTTGAAAAAG
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655242
mod ID: M6ASITE068556 Click to Show/Hide the Full List
mod site chr4:156762275-156762276:- [5]
Sequence ATTTAATATTCTTTTTTATGACAACTTAGATCAACTATTTT
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655243
mod ID: M6ASITE068557 Click to Show/Hide the Full List
mod site chr4:156762352-156762353:- [5]
Sequence ATTTTTATATTCTCCTTTTGACATTATAACTGTTGGCTTTT
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655244
mod ID: M6ASITE068558 Click to Show/Hide the Full List
mod site chr4:156762374-156762375:- [5]
Sequence GTTTATTTGTTTCATTGTGTACATTTTTATATTCTCCTTTT
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655245
mod ID: M6ASITE068559 Click to Show/Hide the Full List
mod site chr4:156762439-156762440:- [6]
Sequence TCATGGTTTGGAAGAGATAAACCTGAAAAGAAGAGTGGCCT
Motif Score 2.185083333
Cell/Tissue List HEK293T; hNPCs; fibroblasts; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655246
mod ID: M6ASITE068560 Click to Show/Hide the Full List
mod site chr4:156762463-156762464:- [5]
Sequence CCATTTAGAAGAAGAGAACTACATTCATGGTTTGGAAGAGA
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655247
mod ID: M6ASITE068561 Click to Show/Hide the Full List
mod site chr4:156762466-156762467:- [6]
Sequence CTGCCATTTAGAAGAAGAGAACTACATTCATGGTTTGGAAG
Motif Score 3.373380952
Cell/Tissue List HEK293T; U2OS; hNPCs; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655248
mod ID: M6ASITE068562 Click to Show/Hide the Full List
mod site chr4:156762521-156762522:- [6]
Sequence ACTTGTGTCGTGCTGATAGGACAGACTGGATTTTTCATATT
Motif Score 3.643047619
Cell/Tissue List HEK293T; U2OS; hNPCs; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655249
mod ID: M6ASITE068563 Click to Show/Hide the Full List
mod site chr4:156762541-156762542:- [6]
Sequence ACTATGTTGCTATGAATTAAACTTGTGTCGTGCTGATAGGA
Motif Score 2.627720238
Cell/Tissue List HEK293T; U2OS; hNPCs; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655250
mod ID: M6ASITE068564 Click to Show/Hide the Full List
mod site chr4:156762561-156762562:- [6]
Sequence AACCTGGTTTTTAAAAAGGAACTATGTTGCTATGAATTAAA
Motif Score 3.373380952
Cell/Tissue List HEK293T; U2OS; hNPCs; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655251
mod ID: M6ASITE068565 Click to Show/Hide the Full List
mod site chr4:156762580-156762581:- [6]
Sequence GAACATTCTATGTACTACAAACCTGGTTTTTAAAAAGGAAC
Motif Score 2.185083333
Cell/Tissue List HEK293T; U2OS; hNPCs; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655252
mod ID: M6ASITE068566 Click to Show/Hide the Full List
mod site chr4:156762584-156762585:- [5]
Sequence ACCAGAACATTCTATGTACTACAAACCTGGTTTTTAAAAAG
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655253
mod ID: M6ASITE068567 Click to Show/Hide the Full List
mod site chr4:156762598-156762599:- [6]
Sequence ATTCACATATGTAAACCAGAACATTCTATGTACTACAAACC
Motif Score 2.951386905
Cell/Tissue List HEK293T; U2OS; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655254
mod ID: M6ASITE068568 Click to Show/Hide the Full List
mod site chr4:156762604-156762605:- [6]
Sequence GCTCATATTCACATATGTAAACCAGAACATTCTATGTACTA
Motif Score 2.185083333
Cell/Tissue List HEK293T; U2OS; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655255
mod ID: M6ASITE068569 Click to Show/Hide the Full List
mod site chr4:156762614-156762615:- [5]
Sequence TTTTTTTTTTGCTCATATTCACATATGTAAACCAGAACATT
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655256
mod ID: M6ASITE068570 Click to Show/Hide the Full List
mod site chr4:156762725-156762726:- [7]
Sequence AATGTCAGTACAGGAAAAAAACTGTGCAAGTGAGCACCTGA
Motif Score 2.627720238
Cell/Tissue List HepG2; HEK293T; U2OS; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX; AML
Seq Type List m6A-seq; MeRIP-seq; miCLIP
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655257
mod ID: M6ASITE068571 Click to Show/Hide the Full List
mod site chr4:156762882-156762883:- [7]
Sequence TTTGAGAGGAGGCCTAAAGGACAGGAGAAAAGGTCTTCAAT
Motif Score 3.643047619
Cell/Tissue List HepG2; HEK293T; U2OS; hNPCs; fibroblasts; A549; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000504672.5; ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655258
mod ID: M6ASITE068572 Click to Show/Hide the Full List
mod site chr4:156762930-156762931:- [7]
Sequence TCTGAAAGAGGAGACATCAAACAGAATTAGGAGTTGTGCAA
Motif Score 2.20572619
Cell/Tissue List HepG2; HEK293T; U2OS; hNPCs; fibroblasts; A549; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000504672.5; ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655259
mod ID: M6ASITE068573 Click to Show/Hide the Full List
mod site chr4:156762937-156762938:- [7]
Sequence AGTGCATTCTGAAAGAGGAGACATCAAACAGAATTAGGAGT
Motif Score 2.897386905
Cell/Tissue List HepG2; HEK293T; U2OS; hNPCs; fibroblasts; A549; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000502773.6; ENST00000504672.5; ENST00000274071.6
External Link RMBase: m6A_site_655260
mod ID: M6ASITE068574 Click to Show/Hide the Full List
mod site chr4:156762959-156762960:- [8]
Sequence ACCTTTCATCTTCAGGATTTACAGTGCATTCTGAAAGAGGA
Motif Score 2.07285119
Cell/Tissue List brain; liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000274071.6; ENST00000506880.5; ENST00000502773.6; ENST00000504672.5
External Link RMBase: m6A_site_655261
mod ID: M6ASITE068575 Click to Show/Hide the Full List
mod site chr4:156762979-156762980:- [7]
Sequence CTCAGTTGTTTGCTTCAAGGACCTTTCATCTTCAGGATTTA
Motif Score 3.622404762
Cell/Tissue List HepG2; HEK293T; U2OS; hNPCs; fibroblasts; A549; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000506880.5; ENST00000504672.5; ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655262
mod ID: M6ASITE068576 Click to Show/Hide the Full List
mod site chr4:156763100-156763101:- [8]
Sequence ACTGTGTGTGCAGAGGGAGCACAGGAGGATAGCCGCATCAC
Motif Score 2.830589286
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000504672.5; ENST00000422544.2; ENST00000506880.5; ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655263
mod ID: M6ASITE068577 Click to Show/Hide the Full List
mod site chr4:156763184-156763185:- [9]
Sequence TCCTTCAGTTGAGACCAAAGACCGGTGTCAGGGGATTGCAC
Motif Score 2.876744048
Cell/Tissue List HEK293T; U2OS; hNPCs; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000422544.2; ENST00000274071.6; ENST00000502773.6; ENST00000506880.5; ENST00000504672.5
External Link RMBase: m6A_site_655264
mod ID: M6ASITE068578 Click to Show/Hide the Full List
mod site chr4:156763191-156763192:- [9]
Sequence TTTCAGGTCCTTCAGTTGAGACCAAAGACCGGTGTCAGGGG
Motif Score 2.876744048
Cell/Tissue List HEK293T; U2OS; hNPCs; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6; ENST00000422544.2; ENST00000504672.5; ENST00000506880.5
External Link RMBase: m6A_site_655265
mod ID: M6ASITE068579 Click to Show/Hide the Full List
mod site chr4:156850276-156850277:- [5]
Sequence GTAGAGGAAAATGTATGGATACAACTTACGTTTGATGAAAG
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000422544.2; ENST00000502773.6; ENST00000274071.6; ENST00000512711.1
External Link RMBase: m6A_site_655266
mod ID: M6ASITE068580 Click to Show/Hide the Full List
mod site chr4:156850411-156850412:- [5]
Sequence ATGTTTTTTGCTTTAGGAGTACAAGATCCTCAGCATGAGAG
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000274071.6; ENST00000422544.2; ENST00000512711.1; ENST00000502773.6
External Link RMBase: m6A_site_655267
mod ID: M6ASITE068581 Click to Show/Hide the Full List
mod site chr4:156970792-156970793:- [10]
Sequence CAGTTTTCCAGCAACAAGGAACAGAACGGTGAGTCTTTCCC
Motif Score 2.951386905
Cell/Tissue List iSLK; MSC; TIME; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000422544.2; ENST00000502773.6; ENST00000274071.6; ENST00000513664.1
External Link RMBase: m6A_site_655268
mod ID: M6ASITE068582 Click to Show/Hide the Full List
mod site chr4:156970845-156970846:- [11]
Sequence TGGCCGGCCAGAGACAGGGGACTCAGGCGGAATCCAACCTG
Motif Score 4.065041667
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000513664.1; ENST00000502773.6; ENST00000422544.2; ENST00000274071.6
External Link RMBase: m6A_site_655269
mod ID: M6ASITE068583 Click to Show/Hide the Full List
mod site chr4:156970852-156970853:- [11]
Sequence TCTGCCCTGGCCGGCCAGAGACAGGGGACTCAGGCGGAATC
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6; ENST00000513664.1; ENST00000422544.2
External Link RMBase: m6A_site_655270
mod ID: M6ASITE068584 Click to Show/Hide the Full List
mod site chr4:156970963-156970964:- [11]
Sequence CCCTGGCGGTGGTGAAAGAGACTCGGGAGTCGCTGCTTCCA
Motif Score 3.319380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; H1A; H1B; fibroblasts; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000502773.6; ENST00000513664.1; ENST00000274071.6
External Link RMBase: m6A_site_655271
mod ID: M6ASITE068585 Click to Show/Hide the Full List
mod site chr4:156971044-156971045:- [11]
Sequence TTGGATGGGATTATGTGGAAACTACCCTGCGATTCTCTGCT
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; H1A; H1B; fibroblasts; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655272
mod ID: M6ASITE068586 Click to Show/Hide the Full List
mod site chr4:156971092-156971093:- [11]
Sequence ATCCTTTTCAAAAACTGGAGACACAGAAGAGGGCTCTAGGA
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; H1A; H1B; fibroblasts; A549; MM6; Huh7; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655273
mod ID: M6ASITE068587 Click to Show/Hide the Full List
mod site chr4:156971099-156971100:- [11]
Sequence TGCTTTGATCCTTTTCAAAAACTGGAGACACAGAAGAGGGC
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; H1A; H1B; fibroblasts; A549; MM6; Huh7; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655274
mod ID: M6ASITE068588 Click to Show/Hide the Full List
mod site chr4:156971139-156971140:- [11]
Sequence ATTTGTTTAAACCTTGGGAAACTGGTTCAGGTCCAGGTTTT
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; H1A; H1B; fibroblasts; A549; MM6; Huh7; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655275
mod ID: M6ASITE068589 Click to Show/Hide the Full List
mod site chr4:156971149-156971150:- [11]
Sequence ACAGCTCAGGATTTGTTTAAACCTTGGGAAACTGGTTCAGG
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; H1A; H1B; fibroblasts; A549; MM6; Huh7; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655276
mod ID: M6ASITE068590 Click to Show/Hide the Full List
mod site chr4:156971243-156971244:- [12]
Sequence CTCCCAGCAACTTGCTGGGGACTTCTCGCCGCTCCCCCGCG
Motif Score 4.065041667
Cell/Tissue List CD34; HepG2; HEK293T; fibroblasts; A549; MM6; Huh7; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000502773.6; ENST00000274071.6
External Link RMBase: m6A_site_655277
mod ID: M6ASITE068591 Click to Show/Hide the Full List
mod site chr4:156971274-156971275:- [12]
Sequence GCCTCTGTCCTGTCCCCCGAACTGACAGGTGCTCCCAGCAA
Motif Score 3.373380952
Cell/Tissue List CD34; HepG2; HEK293T; fibroblasts; A549; MM6; Huh7; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000274071.6; ENST00000502773.6
External Link RMBase: m6A_site_655278
mod ID: M6ASITE068592 Click to Show/Hide the Full List
mod site chr4:156971349-156971350:- [12]
Sequence AGCTTTGTTATTGATCAGAAACTGCTCGCCGCCGACTTGGC
Motif Score 2.627720238
Cell/Tissue List CD34; HEK293T; HEK293A-TOA; iSLK; MSC
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m6A_site_655279
mod ID: M6ASITE068593 Click to Show/Hide the Full List
mod site chr4:156971468-156971469:- [13]
Sequence CCGGCGCCCCGGCCCGTGGGACCCGCCGCGGCGCCCTCGCC
Motif Score 3.622404762
Cell/Tissue List HEK293T; GSC-11; HEK293A-TOA; iSLK; MSC
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m6A_site_655280
mod ID: M6ASITE068594 Click to Show/Hide the Full List
mod site chr4:156971588-156971589:- [11]
Sequence TCCGTGCTGCGGCGCTCCGAACCCGGGGCCAACTGCGCTCC
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; HEK293T; fibroblasts; MM6; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m6A_site_655281
mod ID: M6ASITE068595 Click to Show/Hide the Full List
mod site chr4:156971628-156971629:- [11]
Sequence GTGAACTTTGGTCGCGGAAAACTCAAGCCAGGTGCCGGAAT
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; fibroblasts; A549; H1299; MM6; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m6A_site_655282
mod ID: M6ASITE068596 Click to Show/Hide the Full List
mod site chr4:156971644-156971645:- [11]
Sequence GACGAGCCCGAACAAGGTGAACTTTGGTCGCGGAAAACTCA
Motif Score 3.373380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; fibroblasts; A549; H1299; MM6; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m6A_site_655283
mod ID: M6ASITE068597 Click to Show/Hide the Full List
mod site chr4:156971653-156971654:- [11]
Sequence GGAGCGGGGGACGAGCCCGAACAAGGTGAACTTTGGTCGCG
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; HepG2; A549; H1A; H1B; HEK293T; fibroblasts; H1299; MM6; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000502773.6
External Link RMBase: m6A_site_655284
mod ID: M6ASITE068598 Click to Show/Hide the Full List
mod site chr4:156971725-156971726:- [11]
Sequence GTGGGGGGAGGGGACGGGGAACAACCGGAGCCCCGCGGTGA
Motif Score 2.951386905
Cell/Tissue List HeLa; HepG2; hNPCs; fibroblasts; A549; MM6; Jurkat; GSC-11; HEK293T; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000502773.6
External Link RMBase: m6A_site_655285