m6A Regulator Information
General Information of the m6A Regulator (ID: REG00015)
Regulator Name | Protein virilizer homolog (VIRMA) | ||||
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Synonyms |
KIAA1429; MSTP054
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Gene Name | VIRMA | ||||
Sequence |
MAVDSAMELLFLDTFKHPSAEQSSHIDVVRFPCVVYINEVRVIPPGVRAHSSLPDNRAYG
ETSPHTFQLDLFFNNVSKPSAPVFDRLGSLEYDENTSIIFRPNSKVNTDGLVLRGWYNCL TLAIYGSVDRVISHDRDSPPPPPPPPPPPQPQPSLKRNPKHADGEKEDQFNGSPPRPQPR GPRTPPGPPPPDDDEDDPVPLPVSGDKEEDAPHREDYFEPISPDRNSVPQEGQYSDEGEV EEEQQEEGEEDEDDVDVEEEEDEDEDDRRTVDSIPEEEEEDEEEEGEEDEEGEGDDGYEQ ISSDEDGIADLERETFKYPNFDVEYTAEDLASVPPMTYDPYDRELVPLLYFSCPYKTTFE IEISRMKDQGPDKENSGAIEASVKLTELLDLYREDRGAKWVTALEEIPSLIIKGLSYLQL KNTKQDSLGQLVDWTMQALNLQVALRQPIALNVRQLKAGTKLVSSLAECGAQGVTGLLQA GVISGLFELLFADHVSSSLKLNAFKALDSVISMTEGMEAFLRGRQNEKSGYQKLLELILL DQTVRVVTAGSAILQKCHFYEVLSEIKRLGDHLAEKTSSLPNHSEPDHDTDAGLERTNPE YENEVEASMDMDLLESSNISEGEIERLINLLEEVFHLMETAPHTMIQQPVKSFPTMARIT GPPERDDPYPVLFRYLHSHHFLELVTLLLSIPVTSAHPGVLQATKDVLKFLAQSQKGLLF FMSEYEATNLLIRALCHFYDQDEEEGLQSDGVIDDAFALWLQDSTQTLQCITELFSHFQR CTASEETDHSDLLGTLHNLYLITFNPVGRSAVGHVFSLEKNLQSLITLMEYYSKEALGDS KSKKSVAYNYACILILVVVQSSSDVQMLEQHAASLLKLCKADENNAKLQELGKWLEPLKN LRFEINCIPNLIEYVKQNIDNLMTPEGVGLTTALRVLCNVACPPPPVEGQQKDLKWNLAV IQLFSAEGMDTFIRVLQKLNSILTQPWRLHVNMGTTLHRVTTISMARCTLTLLKTMLTEL LRGGSFEFKDMRVPSALVTLHMLLCSIPLSGRLDSDEQKIQNDIIDILLTFTQGVNEKLT ISEETLANNTWSLMLKEVLSSILKVPEGFFSGLILLSELLPLPLPMQTTQVIEPHDISVA LNTRKLWSMHLHVQAKLLQEIVRSFSGTTCQPIQHMLRRICVQLCDLASPTALLIMRTVL DLIVEDLQSTSEDKEKQYTSQTTRLLALLDALASHKACKLAILHLINGTIKGDERYAEIF QDLLALVRSPGDSVIRQQCVEYVTSILQSLCDQDIALILPSSSEGSISELEQLSNSLPNK ELMTSICDCLLATLANSESSYNCLLTCVRTMMFLAEHDYGLFHLKSSLRKNSSALHSLLK RVVSTFSKDTGELASSFLEFMRQILNSDTIGCCGDDNGLMEVEGAHTSRTMSINAAELKQ LLQSKEESPENLFLELEKLVLEHSKDDDNLDSLLDSVVGLKQMLESSGDPLPLSDQDVEP VLSAPESLQNLFNNRTAYVLADVMDDQLKSMWFTPFQAEEIDTDLDLVKVDLIELSEKCC SDFDLHSELERSFLSEPSSPGRTKTTKGFKLGKHKHETFITSSGKSEYIEPAKRAHVVPP PRGRGRGGFGQGIRPHDIFRQRKQNTSRPPSMHVDDFVAAESKEVVPQDGIPPPKRPLKV SQKISSRGGFSGNRGGRGAFHSQNRFFTPPASKGNYSRREGTRGSSWSAQNTPRGNYNES RGGQSNFNRGPLPPLRPLSSTGYRPSPRDRASRGRGGLGPSWASANSGSGGSRGKFVSGG SGRGRHVRSFTR Click to Show/Hide
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Family | vir family | ||||
Function |
Associated component of the WMM complex, a complex that mediates N6-methyladenosine (m6A) methylation of RNAs, a modification that plays a role in the efficiency of mRNA splicing and RNA processing . Acts as a key regulator of m6A methylation by promoting m6A methylation of mRNAs in the 3'-UTR near the stop codon: recruits the catalytic core components METTL3 and METTL14, thereby guiding m6A methylation at specific sites. Required for mRNA polyadenylation via its role in selective m6A methylation: m6A methylation of mRNAs in the 3'-UTR near the stop codon correlating with alternative polyadenylation (APA).
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Gene ID | 25962 | ||||
Uniprot ID | |||||
Regulator Type | WRITER ERASER READER | ||||
Mechanism Diagram | Click to View the Original Diagram | ||||
Target Genes | Click to View Potential Target Genes of This Regulator |
Full List of Target Gene(s) of This m6A Regulator and Corresponding Disease/Drug Response(s)
VIRMA can regulate the m6A methylation of following target genes, and result in corresponding disease/drug response(s). You can browse corresponding disease or drug response(s) resulted from the regulation of certain target gene.
Browse Target Gene related Disease
Browse Target Gene related Drug
Cyclin-dependent kinase 1 (CDK1)
Representative RNA-seq result indicating the expression of this target gene regulated by VIRMA | ||
Cell Line | Human umbilical vein endothelial cells | Homo sapiens |
Treatment: siVIRMA HUVECs
Control: siControl HUVECs
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GSE167067 | |
Regulation |
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logFC: -7.84E-01 p-value: 3.08E-02 |
More Results | Click to View More RNA-seq Results |
Breast cancer [ICD-11: 2C60]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [1] | |||
Responsed Disease | Breast cancer [ICD-11: 2C60] | |||
Target Regulation | Up regulation | |||
Pathway Response | Cell cycle | hsa04110 | ||
Cell Process | Cell proliferation and metastasis | |||
Response Summary | KIAA1429 acts as an oncogenic factor in breast cancer by regulating CDK1 in an N6-methyladenosine-independent manner.5'-fluorouracil was found to be very effective in reducing the expression of KIAA1429 and Cyclin-dependent kinase 1 (CDK1) in breast cancer. | |||
Death-associated protein kinase 3 (DAPK3)
Representative RNA-seq result indicating the expression of this target gene regulated by VIRMA | ||
Cell Line | Human umbilical vein endothelial cells | Homo sapiens |
Treatment: siVIRMA HUVECs
Control: siControl HUVECs
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GSE167067 | |
Regulation |
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logFC: 5.95E-01 p-value: 2.81E-02 |
More Results | Click to View More RNA-seq Results |
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [2] | |||
Responsed Disease | Non-small-cell lung carcinoma [ICD-11: 2C25.Y] | |||
Target Regulation | Down regulation | |||
In-vitro Model |
PC-9 | Lung adenocarcinoma | Homo sapiens | CVCL_B260 |
NCI-H520 | Lung squamous cell carcinoma | Homo sapiens | CVCL_1566 | |
A-549 | Lung adenocarcinoma | Homo sapiens | CVCL_0023 | |
Response Summary | High expression of KIAA1429 was testified in patients with non-small cell lung cancer and predicted worse prognosis in patients. KIAA1429-guided m6A modifications promoted NSCLC progression via m6A-dependent degradation of Death-associated protein kinase 3 (DAPK3) mRNA. | |||
Histone H2AX (H2AX)
Representative RNA-seq result indicating the expression of this target gene regulated by VIRMA | ||
Cell Line | Human umbilical vein endothelial cells | Homo sapiens |
Treatment: siVIRMA HUVECs
Control: siControl HUVECs
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GSE167067 | |
Regulation |
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logFC: -1.09E+00 p-value: 1.68E-02 |
More Results | Click to View More RNA-seq Results |
Testicular cancer [ICD-11: 2C80]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [3] | |||
Responsed Disease | Germ cell tumour of testis [ICD-11: 2C80.2] | |||
Responsed Drug | Cisplatin | Approved | ||
Target Regulation | Down regulation | |||
In-vitro Model |
2102EP | Embryonal carcinoma | Homo sapiens | CVCL_C522 |
NCC-IT | Testicular embryonal carcinoma | Homo sapiens | CVCL_1451 | |
NT2 | Malignant neoplasms | Mus musculus | CVCL_JA57 | |
TCam-2 | Testicular seminoma | Homo sapiens | CVCL_T012 | |
Response Summary | VIRMA has an oncogenic role in germ cell tumor confirming our previous tissue-based study and is further involved in response to cisplatin by interfering with DNA repair. Enhanced response to cisplatin after VIRMA knockdown was related to significant increase in DNA damage (with higher Histone H2AX (H2AX) and GADD45B levels) and downregulation of XLF and MRE11. | |||
SMC protein 1A (SMC1A)
Representative RIP-seq result supporting the interaction between the target gene and VIRMA | ||
Cell Line | HeLa | Homo sapiens |
Regulation | logFC: 1.58E+00 | GSE102493 |
Breast cancer [ICD-11: 2C60]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [4] | |||
Responsed Disease | Breast cancer [ICD-11: 2C60] | |||
Target Regulation | Up regulation | |||
Pathway Response | Adherens junction | hsa04520 | ||
Cell Process | Epithelial-mesenchymal transition | |||
Cell migration | ||||
Cell invasion | ||||
In-vitro Model |
ZR-75-1 | Invasive breast carcinoma | Homo sapiens | CVCL_0588 |
SUM1315MO2 | Invasive breast carcinoma of no special type | Homo sapiens | CVCL_5589 | |
In-vivo Model | For the mouse lung metastasis model, SUM-1315 cells (2 × 106/0.2 mL) expressing NC, shKIAA1429, SNAIL, or shKIAA1429+SNAIL were injected into the nude mice through the tail vein. | |||
Response Summary | KIAA1429 could significantly promote the migration and invasion of breast cancer cells. KIAA1429 could bind to the motif in the 3' UTR of SMC protein 1A (SMC1A) mRNA directly and enhance SMC1A mRNA stability. In conclusion, the study revealed a novel mechanism of the KIAA1429/SMC1A/SNAIL axis in the regulation of metastasis of breast cancer. | |||
Transcription factor Jun (c-Jun/JUN)
Representative RIP-seq result supporting the interaction between the target gene and VIRMA | ||
Cell Line | HeLa | Homo sapiens |
Regulation | logFC: 1.80E+00 | GSE102493 |
Gastric cancer [ICD-11: 2B72]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [5] | |||
Responsed Disease | Gastric cancer [ICD-11: 2B72] | |||
Target Regulation | Up regulation | |||
Pathway Response | Cell cycle | hsa04110 | ||
Cell Process | Arrest cell cycle at the S phase | |||
In-vitro Model |
MGC-803 | Gastric mucinous adenocarcinoma | Homo sapiens | CVCL_5334 |
SGC-7901 | Gastric carcinoma | Homo sapiens | CVCL_0520 | |
In-vivo Model | Gastric cancer cell line MGC803 (shRNA-NC or shKIAA1429; 1 × 107) was injected subcutaneously into the armpit of BALB/c nude mice (5-week-old, male, n = 4 for each group). Tumor growth was monitored at 3-day intervals. | |||
Response Summary | KIAA1429 played a key role in promoting gastric cancer by regulating Transcription factor Jun (c-Jun/JUN) expression in an m6A independent manner. | |||
Cyclin-dependent kinase 4 (CDK4)
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [6] | |||
Responsed Disease | Lung cancer [ICD-11: 2C25] | |||
Cell Process | Cell apoptosis | |||
In-vitro Model |
A-549 | Lung adenocarcinoma | Homo sapiens | CVCL_0023 |
NCI-H520 | Lung squamous cell carcinoma | Homo sapiens | CVCL_1566 | |
HBE (Human bronchial epithelial cell line) | ||||
LTEP-a2 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6929 | |
SK-MES-1 | Lung squamous cell carcinoma | Homo sapiens | CVCL_0630 | |
Response Summary | GSEA revealed that KIAA1429, METTL3, and IGF2BP1 were significantly related to multiple biological behaviors, including proliferation, apoptosis, metastasis, energy metabolism, drug resistance, and recurrence, and that KIAA1429 and IGF2BP1 had potential target genes, including E2F3, WTAP, CCND1, Cyclin-dependent kinase 4 (CDK4), EGR2, YBX1, and TLX, which were associated with lung cancers. | |||
DNA-binding protein inhibitor ID-2 (ID2)
Liver cancer [ICD-11: 2C12]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [7] | |||
Responsed Disease | Hepatocellular carcinoma [ICD-11: 2C12.02] | |||
Target Regulation | Up regulation | |||
Pathway Response | RNA degradation | hsa03018 | ||
Cell Process | Cell migration and invasion | |||
In-vitro Model |
Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 |
Hep-G2/2.2.15 | Hepatoblastoma | Homo sapiens | CVCL_L855 | |
L-02 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6926 | |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
Response Summary | KIAA1429 facilitated migration and invasion of Hepatocellular carcinoma cells by inhibiting DNA-binding protein inhibitor ID-2 (ID2) via upregulating m6A modification of ID2 mRNA. | |||
Double-strand break repair protein MRE11 (MRE11)
Testicular cancer [ICD-11: 2C80]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [3] | |||
Responsed Disease | Germ cell tumour of testis [ICD-11: 2C80.2] | |||
Responsed Drug | Cisplatin | Approved | ||
Target Regulation | Up regulation | |||
In-vitro Model |
2102EP | Embryonal carcinoma | Homo sapiens | CVCL_C522 |
NCC-IT | Testicular embryonal carcinoma | Homo sapiens | CVCL_1451 | |
NT2 | Malignant neoplasms | Mus musculus | CVCL_JA57 | |
TCam-2 | Testicular seminoma | Homo sapiens | CVCL_T012 | |
Response Summary | VIRMA has an oncogenic role in germ cell tumor confirming our previous tissue-based study and is further involved in response to cisplatin by interfering with DNA repair. Enhanced response to cisplatin after VIRMA knockdown was related to significant increase in DNA damage (with higher Gamma-H2AX and GADD45B levels) and downregulation of XLF and Double-strand break repair protein MRE11 (MRE11). | |||
E3 SUMO-protein ligase EGR2 (EGR2)
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [6] | |||
Responsed Disease | Lung cancer [ICD-11: 2C25] | |||
Cell Process | Cell apoptosis | |||
In-vitro Model |
A-549 | Lung adenocarcinoma | Homo sapiens | CVCL_0023 |
NCI-H520 | Lung squamous cell carcinoma | Homo sapiens | CVCL_1566 | |
HBE (Human bronchial epithelial cell line) | ||||
LTEP-a2 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6929 | |
SK-MES-1 | Lung squamous cell carcinoma | Homo sapiens | CVCL_0630 | |
Response Summary | GSEA revealed that KIAA1429, METTL3, and IGF2BP1 were significantly related to multiple biological behaviors, including proliferation, apoptosis, metastasis, energy metabolism, drug resistance, and recurrence, and that KIAA1429 and IGF2BP1 had potential target genes, including E2F3, WTAP, CCND1, CDK4, E3 SUMO-protein ligase EGR2 (EGR2), YBX1, and TLX, which were associated with lung cancers. | |||
E3 ubiquitin-protein ligase Hakai (CBLL1)
Breast cancer [ICD-11: 2C60]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [8] | |||
Responsed Disease | Breast cancer [ICD-11: 2C60] | |||
Target Regulation | Up regulation | |||
Cell Process | Cell apoptosis | |||
Response Summary | KIAA1429 had the highest mutation frequency. Higher E3 ubiquitin-protein ligase Hakai (CBLL1) expression was associated with a better prognosis in breast cancer than lower CBLL1 expression. | |||
G1/S-specific cyclin-D1 (CCND1)
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [6] | |||
Responsed Disease | Lung cancer [ICD-11: 2C25] | |||
Cell Process | Cell apoptosis | |||
In-vitro Model |
A-549 | Lung adenocarcinoma | Homo sapiens | CVCL_0023 |
NCI-H520 | Lung squamous cell carcinoma | Homo sapiens | CVCL_1566 | |
HBE (Human bronchial epithelial cell line) | ||||
LTEP-a2 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6929 | |
SK-MES-1 | Lung squamous cell carcinoma | Homo sapiens | CVCL_0630 | |
Response Summary | GSEA revealed that KIAA1429, METTL3, and IGF2BP1 were significantly related to multiple biological behaviors, including proliferation, apoptosis, metastasis, energy metabolism, drug resistance, and recurrence, and that KIAA1429 and IGF2BP1 had potential target genes, including E2F3, WTAP, G1/S-specific cyclin-D1 (CCND1), CDK4, EGR2, YBX1, and TLX, which were associated with lung cancers. | |||
Homeobox protein Hox-A1 (HOXA1)
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [9] | |||
Responsed Disease | Non-small-cell lung carcinoma [ICD-11: 2C25.Y] | |||
Responsed Drug | Gefitinib | Approved | ||
Target Regulation | Up regulation | |||
In-vitro Model |
Gefitinib-resistant cell line PC9GR (Gefitinib-resistant PC9 cell line) | |||
PC-9 | Lung adenocarcinoma | Homo sapiens | CVCL_B260 | |
NHBE (Normal bronchial epithelial cells) | ||||
In-vivo Model | PC9-GR cells stably infected with KIAA1429-targeting shRNA and control were suspended in 100 uL of PBS with Matrigel matrix (BD Biosciences). Then, cells were injected into one of the flanks of BALB/c nude mice. | |||
Response Summary | m6A methyltransferase KIAA1429 was highly expressed in gefitinib-resistant NSCLC cells (PC9-GR), tissues, and closely related to unfavorable survival. KIAA1429 plays essential oncogenic roles in NSCLC gefitinib resistance, which provided a feasible therapeutic target for NSCLC. | |||
NAD-dependent protein deacetylase sirtuin-1 (SIRT1)
Colorectal cancer [ICD-11: 2B91]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [10] | |||
Responsed Disease | Colorectal cancer [ICD-11: 2B91] | |||
Target Regulation | Up regulation | |||
In-vitro Model |
SW620 | Colon adenocarcinoma | Homo sapiens | CVCL_0547 |
SW480 | Colon adenocarcinoma | Homo sapiens | CVCL_0546 | |
NCM460 | Normal | Homo sapiens | CVCL_0460 | |
LoVo | Colon adenocarcinoma | Homo sapiens | CVCL_0399 | |
HT29 | Colon cancer | Mus musculus | CVCL_A8EZ | |
HCT 8 | Colon adenocarcinoma | Homo sapiens | CVCL_2478 | |
HCT 116 | Colon carcinoma | Homo sapiens | CVCL_0291 | |
In-vivo Model | 5.0 × 106 SW480 cells (infected with scr or KIAA1429 shRNA) that suspended in 50 ul PBS and mixed with an equal volume of matrigel were subcutaneously injected in a 6-weeks-old male NOD/SCID (The Jackson Laboratory, Stock No: 001303) mice flank. We started measuring tumor size at the indicated times one week after injection. | |||
Response Summary | KIAA1429 increased the expression of NAD-dependent protein deacetylase sirtuin-1 (SIRT1) via regulating its mRNA stability in an m6A-dependent manner. More importantly, in vivo experiment showed that depletion of KIAA1429 significantly inhibited colorectal tumor growth. | |||
Negative growth regulatory protein MyD118 (GADD45B)
Testicular cancer [ICD-11: 2C80]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [3] | |||
Responsed Disease | Germ cell tumour of testis [ICD-11: 2C80.2] | |||
Responsed Drug | Cisplatin | Approved | ||
Target Regulation | Down regulation | |||
In-vitro Model |
2102EP | Embryonal carcinoma | Homo sapiens | CVCL_C522 |
NCC-IT | Testicular embryonal carcinoma | Homo sapiens | CVCL_1451 | |
NT2 | Malignant neoplasms | Mus musculus | CVCL_JA57 | |
TCam-2 | Testicular seminoma | Homo sapiens | CVCL_T012 | |
Response Summary | VIRMA has an oncogenic role in germ cell tumor confirming our previous tissue-based study and is further involved in response to cisplatin by interfering with DNA repair. Enhanced response to cisplatin after VIRMA knockdown was related to significant increase in DNA damage (with higher Gamma-H2AX and Negative growth regulatory protein MyD118 (GADD45B) levels) and downregulation of XLF and MRE11. | |||
Non-homologous end-joining factor 1 (NHEJ1/XLF)
Testicular cancer [ICD-11: 2C80]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [3] | |||
Responsed Disease | Germ cell tumour of testis [ICD-11: 2C80.2] | |||
Responsed Drug | Cisplatin | Approved | ||
Target Regulation | Up regulation | |||
In-vitro Model |
2102EP | Embryonal carcinoma | Homo sapiens | CVCL_C522 |
NCC-IT | Testicular embryonal carcinoma | Homo sapiens | CVCL_1451 | |
NT2 | Malignant neoplasms | Mus musculus | CVCL_JA57 | |
TCam-2 | Testicular seminoma | Homo sapiens | CVCL_T012 | |
Response Summary | VIRMA has an oncogenic role in germ cell tumor confirming our previous tissue-based study and is further involved in response to cisplatin by interfering with DNA repair. Enhanced response to cisplatin after VIRMA knockdown was related to significant increase in DNA damage (with higher Gamma-H2AX and GADD45B levels) and downregulation of Non-homologous end-joining factor 1 (NHEJ1/XLF) and MRE11. | |||
Nuclear receptor subfamily 2 group E member 1 (TLX/NR2E1)
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [6] | |||
Responsed Disease | Lung cancer [ICD-11: 2C25] | |||
Cell Process | Cell apoptosis | |||
In-vitro Model |
A-549 | Lung adenocarcinoma | Homo sapiens | CVCL_0023 |
NCI-H520 | Lung squamous cell carcinoma | Homo sapiens | CVCL_1566 | |
HBE (Human bronchial epithelial cell line) | ||||
LTEP-a2 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6929 | |
SK-MES-1 | Lung squamous cell carcinoma | Homo sapiens | CVCL_0630 | |
Response Summary | GSEA revealed that KIAA1429, METTL3, and IGF2BP1 were significantly related to multiple biological behaviors, including proliferation, apoptosis, metastasis, energy metabolism, drug resistance, and recurrence, and that KIAA1429 and IGF2BP1 had potential target genes, including E2F3, WTAP, CCND1, CDK4, EGR2, YBX1, and Nuclear receptor subfamily 2 group E member 1 (TLX/NR2E1), which were associated with lung cancers. | |||
Pre-mRNA-splicing regulator WTAP (WTAP)
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [6] | |||
Responsed Disease | Lung cancer [ICD-11: 2C25] | |||
Cell Process | Cell apoptosis | |||
In-vitro Model |
A-549 | Lung adenocarcinoma | Homo sapiens | CVCL_0023 |
NCI-H520 | Lung squamous cell carcinoma | Homo sapiens | CVCL_1566 | |
HBE (Human bronchial epithelial cell line) | ||||
LTEP-a2 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6929 | |
SK-MES-1 | Lung squamous cell carcinoma | Homo sapiens | CVCL_0630 | |
Response Summary | GSEA revealed that KIAA1429, METTL3, and IGF2BP1 were significantly related to multiple biological behaviors, including proliferation, apoptosis, metastasis, energy metabolism, drug resistance, and recurrence, and that KIAA1429 and IGF2BP1 had potential target genes, including E2F3, Pre-mRNA-splicing regulator WTAP (WTAP), CCND1, CDK4, EGR2, YBX1, and TLX, which were associated with lung cancers. | |||
Protein BTG2 (BTG2)
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [11] | |||
Responsed Disease | Lung adenocarcinoma [ICD-11: 2C25.0] | |||
Target Regulation | Up regulation | |||
In-vitro Model |
A-549 | Lung adenocarcinoma | Homo sapiens | CVCL_0023 |
SPC-A1 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6955 | |
NCI-H1299 | Lung large cell carcinoma | Homo sapiens | CVCL_0060 | |
HBE (Human bronchial epithelial cell line) | ||||
In-vivo Model | For the in vivo cell proliferation assay, A549 and SPCA1 cells were stably transfected with sh-Ctrl and sh-KIAA1429 using lentivirus (GeneChem, Shanghai, China). The cells were subcutaneously injected into either side of the posterior flanks of the mouse. The tumor volume was measured every few days (length×width2×0.5). | |||
Response Summary | Knockdown of KIAA1429 significantly decreased the m6A levels of Protein BTG2 (BTG2) mRNA, leading to enhanced YTHDF2-dependent BTG2 mRNA stability and promoted the expression of BTG2; thus, participating in the tumorigenesis of LUAD. | |||
Trans-acting T-cell-specific transcription factor GATA-3 (GATA3)
Liver cancer [ICD-11: 2C12]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [12] | |||
Responsed Disease | Hepatocellular carcinoma [ICD-11: 2C12.02] | |||
Target Regulation | Down regulation | |||
Cell Process | Cell proliferation and metastasis | |||
In-vitro Model |
HCCLM3 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_6832 |
HEK293T | Normal | Homo sapiens | CVCL_0063 | |
Hep 3B2.1-7 | Childhood hepatocellular carcinoma | Homo sapiens | CVCL_0326 | |
Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 | |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
SK-HEP-1 | Liver and intrahepatic bile duct epithelial neoplasm | Homo sapiens | CVCL_0525 | |
SNU-182 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0090 | |
SNU-449 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0454 | |
Response Summary | KIAA1429 induced m6A methylation on the 3' UTR of Trans-acting T-cell-specific transcription factor GATA-3 (GATA3) pre-mRNA, leading to the separation of the RNA-binding protein HuR and the degradation of GATA3 pre-mRNA. KIAA1429 was considerably upregulated in Hepatocellular carcinoma tissues. | |||
Transcription factor E2F3 (E2F3)
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [6] | |||
Responsed Disease | Lung cancer [ICD-11: 2C25] | |||
Cell Process | Cell apoptosis | |||
In-vitro Model |
A-549 | Lung adenocarcinoma | Homo sapiens | CVCL_0023 |
NCI-H520 | Lung squamous cell carcinoma | Homo sapiens | CVCL_1566 | |
HBE (Human bronchial epithelial cell line) | ||||
LTEP-a2 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6929 | |
SK-MES-1 | Lung squamous cell carcinoma | Homo sapiens | CVCL_0630 | |
Response Summary | GSEA revealed that KIAA1429, METTL3, and IGF2BP1 were significantly related to multiple biological behaviors, including proliferation, apoptosis, metastasis, energy metabolism, drug resistance, and recurrence, and that KIAA1429 and IGF2BP1 had potential target genes, including Transcription factor E2F3 (E2F3), WTAP, CCND1, CDK4, EGR2, YBX1, and TLX, which were associated with lung cancers. | |||
Y-box-binding protein 1 (YBX1)
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [6] | |||
Responsed Disease | Lung cancer [ICD-11: 2C25] | |||
Cell Process | Cell apoptosis | |||
In-vitro Model |
A-549 | Lung adenocarcinoma | Homo sapiens | CVCL_0023 |
NCI-H520 | Lung squamous cell carcinoma | Homo sapiens | CVCL_1566 | |
HBE (Human bronchial epithelial cell line) | ||||
LTEP-a2 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6929 | |
SK-MES-1 | Lung squamous cell carcinoma | Homo sapiens | CVCL_0630 | |
Response Summary | GSEA revealed that KIAA1429, METTL3, and IGF2BP1 were significantly related to multiple biological behaviors, including proliferation, apoptosis, metastasis, energy metabolism, drug resistance, and recurrence, and that KIAA1429 and IGF2BP1 had potential target genes, including E2F3, WTAP, CCND1, CDK4, EGR2, Y-box-binding protein 1 (YBX1), and TLX, which were associated with lung cancers. | |||
Zinc finger protein SNAI1 (SNAI1)
Breast cancer [ICD-11: 2C60]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [4] | |||
Responsed Disease | Breast cancer [ICD-11: 2C60] | |||
Target Regulation | Up regulation | |||
Pathway Response | Adherens junction | hsa04520 | ||
Cell Process | Epithelial-mesenchymal transition | |||
Cell migration | ||||
Cell invasion | ||||
In-vitro Model |
ZR-75-1 | Invasive breast carcinoma | Homo sapiens | CVCL_0588 |
SUM1315MO2 | Invasive breast carcinoma of no special type | Homo sapiens | CVCL_5589 | |
In-vivo Model | For the mouse lung metastasis model, SUM-1315 cells (2 × 106/0.2 mL) expressing NC, shKIAA1429, SNAIL, or shKIAA1429+SNAIL were injected into the nude mice through the tail vein. | |||
Response Summary | KIAA1429 could significantly promote the migration and invasion of breast cancer cells. KIAA1429 could bind to the motif in the 3' UTR of SMC1A mRNA directly and enhance SMC1A mRNA stability. In conclusion, the study revealed a novel mechanism of the KIAA1429/SMC1A/Zinc finger protein SNAI1 (SNAI1) axis in the regulation of metastasis of breast cancer. | |||
Colon cancer associated transcript 1 (CCAT1)
Prostate cancer [ICD-11: 2C82]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [13] | |||
Responsed Disease | Prostate cancer [ICD-11: 2C82] | |||
Target Regulation | Up regulation | |||
Cell Process | RNA stability | |||
In-vitro Model |
22Rv1 | Prostate carcinoma | Homo sapiens | CVCL_1045 |
DU145 | Prostate carcinoma | Homo sapiens | CVCL_0105 | |
LNCaP | Prostate carcinoma | Homo sapiens | CVCL_0395 | |
PC-3 | Prostate carcinoma | Homo sapiens | CVCL_0035 | |
VCaP | Prostate carcinoma | Homo sapiens | CVCL_2235 | |
Response Summary | VIRMA downregulation attenuates the aggressive phenotype of prostate cancer by overall reduction of m6A-levels decreasing stability and abundance of oncogenic lncRNAs. VIRMA depletion and m6A reduction decreased the stability and abundance of Colon cancer associated transcript 1 (CCAT1) transcripts. | |||
Colon cancer associated transcript 2 (CCAT2)
Prostate cancer [ICD-11: 2C82]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [13] | |||
Responsed Disease | Prostate cancer [ICD-11: 2C82] | |||
Target Regulation | Up regulation | |||
Cell Process | RNA stability | |||
In-vitro Model |
22Rv1 | Prostate carcinoma | Homo sapiens | CVCL_1045 |
DU145 | Prostate carcinoma | Homo sapiens | CVCL_0105 | |
LNCaP | Prostate carcinoma | Homo sapiens | CVCL_0395 | |
PC-3 | Prostate carcinoma | Homo sapiens | CVCL_0035 | |
VCaP | Prostate carcinoma | Homo sapiens | CVCL_2235 | |
Response Summary | VIRMA downregulation attenuates the aggressive phenotype of prostate cancer by overall reduction of m6A-levels decreasing stability and abundance of oncogenic lncRNAs. VIRMA depletion and m6A reduction decreased the stability and abundance of Colon cancer associated transcript 2 (CCAT2) transcripts. | |||
Long intergenic non-protein coding RNA 958 (LINC00958)
Gastric cancer [ICD-11: 2B72]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [14] | |||
Responsed Disease | Gastric cancer [ICD-11: 2B72] | |||
Target Regulation | Up regulation | |||
Cell Process | Glycolysis | |||
In-vitro Model |
SGC-7901 | Gastric carcinoma | Homo sapiens | CVCL_0520 |
MKN45 | Gastric adenocarcinoma | Homo sapiens | CVCL_0434 | |
GES-1 | Normal | Homo sapiens | CVCL_EQ22 | |
BGC-823 | Gastric carcinoma | Homo sapiens | CVCL_3360 | |
In-vivo Model | Ten four-week-old BALB/c nude mice were injected with LINC00958-overexpressing or vector-transfected cells. Briefly, 5 × 106 cells were subcutaneously injected in the flank of mice. Four weeks after injection, the mice were sacrificed and examined by weighting. | |||
Response Summary | Long intergenic non-protein coding RNA 958 (LINC00958) accelerated the aerobic glycolysis of GC cells. Mechanistically, KIAA1429 interacted with the m6A modification site and promoted the enrichment of LINC00958, and LINC00958 subsequently cooperated with GLUT1 mRNA to enhance its mRNA stability. | |||
hsa-miR-143-3p
Aortic aneurysm or dissection [ICD-11: BD50]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [15] | |||
Responsed Disease | Aortic aneurysm or dissection [ICD-11: BD50] | |||
Target Regulation | Down regulation | |||
Pathway Response | RNA degradation | hsa03018 | ||
Cell Process | Cell apoptosis | |||
In-vitro Model |
IM-HAEC | Normal | Homo sapiens | CVCL_B5WL |
In-vivo Model | Osmotic mini-pumps containing AngII (1 ug/kg/min, Enzo Bioche) were implanted in 7-week-old male mice. To interfere with the expression of KIAA1429, ALKBH5, or DDX6 in vivo, adeno-associated virus 9 (AAV9) vectors carrying a variety of overexpression plasmids or interfering RNA were randomly injected through the tail vein to C57BL/6N mice. | |||
Response Summary | KIAA1429 is downregulated while ALKBH5 is upregulated in aortic tissues from aortic dissection patients. KIAA1429/ALKBH5-mediated m6A modifications can regulate the processing of hsa-miR-143-3p through interacting with the microprocessor protein DGCR8. KIAA1429 and ALKBH5 can oppositely regulate HASMC proliferation, HAEC apoptosis, and AD progression in AngII-infused mice via the miR-143-3p/DDX6 pathway. | |||
Circ_DLC1
Liver cancer [ICD-11: 2C12]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [16] | |||
Responsed Disease | Hepatocellular carcinoma [ICD-11: 2C12.02] | |||
Target Regulation | Down regulation | |||
Pathway Response | RNA degradation | hsa03018 | ||
Cell Process | RNA stability | |||
In-vitro Model |
SNU-449 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0454 |
SK-HEP-1 | Liver and intrahepatic bile duct epithelial neoplasm | Homo sapiens | CVCL_0525 | |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 | |
Hep 3B2.1-7 | Childhood hepatocellular carcinoma | Homo sapiens | CVCL_0326 | |
In-vivo Model | 5 × 105 cells were injected subcutaneously into the right axilla of mice. Tumor volume was measured by a caliper weekly and calculated as length × width2 × 0.52. For the liver orthotopic-implanted models, each liver of mice was injected with 1 × 106 cells. | |||
Response Summary | Circ_DLC1, a downstream target of KIAA1429, is a promising prognostic marker for HCC patients, and the circDLC1-HuR-MMP1 axis serve as a potential therapeutic target for HCC treatment. | |||
Unspecific Target Gene
Pancreatic cancer [ICD-11: 2C10]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [17] | |||
Responsed Disease | Pancreatic cancer [ICD-11: 2C10] | |||
Responsed Drug | Gemcitabine | Approved | ||
Pathway Response | Adipocytokine signaling pathway | hsa04920 | ||
Cell Process | Epithelial-mesenchymal transition | |||
In-vitro Model |
BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
HDE-CT cell line (A normal human pancreatic cell line) | ||||
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
Response Summary | Lasso regression identified a six-m6A-regulator-signature prognostic model (KIAA1429, HNRNPC, METTL3, YTHDF1, IGF2BP2, and IGF2BP3). Gene set enrichment analysis revealed m6A regulators (KIAA1429, HNRNPC, and IGF2BP2) were related to multiple biological behaviors in pancreatic cancer, including adipocytokine signaling, the well vs. poorly differentiated tumor pathway, tumor metastasis pathway, epithelial mesenchymal transition pathway, gemcitabine resistance pathway, and stemness pathway. | |||
Liver cancer [ICD-11: 2C12]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [18] | |||
Responsed Disease | Hepatocellular carcinoma [ICD-11: 2C12.02] | |||
Responsed Drug | Teniposide | Approved | ||
Target Regulation | Up regulation | |||
Pathway Response | Nucleotide excision repair | hsa03420 | ||
mTOR signaling pathway | hsa04150 | |||
Cell Process | DNA repair | |||
In-vitro Model |
Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
In-vivo Model | To establish a tumour model, C57BL/6 mice were intraperitoneal injected with 25 mg/kg diethylnitrosamine at 2 weeks of age. | |||
Response Summary | The m6A model includes LRPPRC, YTHDF2, KIAA14219, and RBM15B, classified A-hepatocellular carcinoma patients into high/low-risk subtypes. The expression of Immunosuppressive cytokines DNMT1/EZH2 was up-regulated in A-hepatocellular carcinoma patients, and teniposide can be a potential therapeutic drug for A-hepatocellular carcinoma. | |||
Testicular cancer [ICD-11: 2C80]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response of This Target Gene | [19] | |||
Responsed Disease | Testicular cancer [ICD-11: 2C80] | |||
Target Regulation | Up regulation | |||
Cell Process | Transcription | |||
Response Summary | Abundance of m6A and expression of VIRMA/YTHDF3 were different among Testicular Germ Cell Tumors subtypes, with higher levels in SEs, suggesting a contribution to SE phenotype maintenance. | |||
Histone H2AX (H2AX)
Representative RNA-seq result indicating the expression of this target gene regulated by VIRMA | ||
Cell Line | Human umbilical vein endothelial cells | Homo sapiens |
Treatment: siVIRMA HUVECs
Control: siControl HUVECs
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GSE167067 | |
Regulation |
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logFC: -1.09E+00 p-value: 1.68E-02 |
More Results | Click to View More RNA-seq Results |
Cisplatin
[Approved]
In total 1 item(s) under this drug | ||||
Experiment 1 Reporting the m6A-centered Drug Response of This Target Gene | [3] | |||
Responsed Disease | Germ cell tumour of testis | ICD-11: 2C80.2 | ||
Target Regulation | Down regulation | |||
In-vitro Model | 2102EP | Embryonal carcinoma | Homo sapiens | CVCL_C522 |
NCC-IT | Testicular embryonal carcinoma | Homo sapiens | CVCL_1451 | |
NT2 | Malignant neoplasms | Mus musculus | CVCL_JA57 | |
TCam-2 | Testicular seminoma | Homo sapiens | CVCL_T012 | |
Response Summary | VIRMA has an oncogenic role in germ cell tumor confirming our previous tissue-based study and is further involved in response to cisplatin by interfering with DNA repair. Enhanced response to cisplatin after VIRMA knockdown was related to significant increase in DNA damage (with higher Histone H2AX (H2AX) and GADD45B levels) and downregulation of XLF and MRE11. | |||
Double-strand break repair protein MRE11 (MRE11)
Cisplatin
[Approved]
In total 1 item(s) under this drug | ||||
Experiment 1 Reporting the m6A-centered Drug Response of This Target Gene | [3] | |||
Responsed Disease | Germ cell tumour of testis | ICD-11: 2C80.2 | ||
Target Regulation | Up regulation | |||
In-vitro Model | 2102EP | Embryonal carcinoma | Homo sapiens | CVCL_C522 |
NCC-IT | Testicular embryonal carcinoma | Homo sapiens | CVCL_1451 | |
NT2 | Malignant neoplasms | Mus musculus | CVCL_JA57 | |
TCam-2 | Testicular seminoma | Homo sapiens | CVCL_T012 | |
Response Summary | VIRMA has an oncogenic role in germ cell tumor confirming our previous tissue-based study and is further involved in response to cisplatin by interfering with DNA repair. Enhanced response to cisplatin after VIRMA knockdown was related to significant increase in DNA damage (with higher Gamma-H2AX and GADD45B levels) and downregulation of XLF and Double-strand break repair protein MRE11 (MRE11). | |||
Homeobox protein Hox-A1 (HOXA1)
Gefitinib
[Approved]
In total 1 item(s) under this drug | ||||
Experiment 1 Reporting the m6A-centered Drug Response of This Target Gene | [9] | |||
Responsed Disease | Non-small-cell lung carcinoma | ICD-11: 2C25.Y | ||
Target Regulation | Up regulation | |||
In-vitro Model | Gefitinib-resistant cell line PC9GR (Gefitinib-resistant PC9 cell line) | |||
PC-9 | Lung adenocarcinoma | Homo sapiens | CVCL_B260 | |
NHBE (Normal bronchial epithelial cells) | ||||
In-vivo Model | PC9-GR cells stably infected with KIAA1429-targeting shRNA and control were suspended in 100 uL of PBS with Matrigel matrix (BD Biosciences). Then, cells were injected into one of the flanks of BALB/c nude mice. | |||
Response Summary | m6A methyltransferase KIAA1429 was highly expressed in gefitinib-resistant NSCLC cells (PC9-GR), tissues, and closely related to unfavorable survival. KIAA1429 plays essential oncogenic roles in NSCLC gefitinib resistance, which provided a feasible therapeutic target for NSCLC. | |||
Negative growth regulatory protein MyD118 (GADD45B)
Cisplatin
[Approved]
In total 1 item(s) under this drug | ||||
Experiment 1 Reporting the m6A-centered Drug Response of This Target Gene | [3] | |||
Responsed Disease | Germ cell tumour of testis | ICD-11: 2C80.2 | ||
Target Regulation | Down regulation | |||
In-vitro Model | 2102EP | Embryonal carcinoma | Homo sapiens | CVCL_C522 |
NCC-IT | Testicular embryonal carcinoma | Homo sapiens | CVCL_1451 | |
NT2 | Malignant neoplasms | Mus musculus | CVCL_JA57 | |
TCam-2 | Testicular seminoma | Homo sapiens | CVCL_T012 | |
Response Summary | VIRMA has an oncogenic role in germ cell tumor confirming our previous tissue-based study and is further involved in response to cisplatin by interfering with DNA repair. Enhanced response to cisplatin after VIRMA knockdown was related to significant increase in DNA damage (with higher Gamma-H2AX and Negative growth regulatory protein MyD118 (GADD45B) levels) and downregulation of XLF and MRE11. | |||
Non-homologous end-joining factor 1 (NHEJ1/XLF)
Cisplatin
[Approved]
In total 1 item(s) under this drug | ||||
Experiment 1 Reporting the m6A-centered Drug Response of This Target Gene | [3] | |||
Responsed Disease | Germ cell tumour of testis | ICD-11: 2C80.2 | ||
Target Regulation | Up regulation | |||
In-vitro Model | 2102EP | Embryonal carcinoma | Homo sapiens | CVCL_C522 |
NCC-IT | Testicular embryonal carcinoma | Homo sapiens | CVCL_1451 | |
NT2 | Malignant neoplasms | Mus musculus | CVCL_JA57 | |
TCam-2 | Testicular seminoma | Homo sapiens | CVCL_T012 | |
Response Summary | VIRMA has an oncogenic role in germ cell tumor confirming our previous tissue-based study and is further involved in response to cisplatin by interfering with DNA repair. Enhanced response to cisplatin after VIRMA knockdown was related to significant increase in DNA damage (with higher Gamma-H2AX and GADD45B levels) and downregulation of Non-homologous end-joining factor 1 (NHEJ1/XLF) and MRE11. | |||
Unspecific Target Gene
Gemcitabine
[Approved]
In total 1 item(s) under this drug | ||||
Experiment 1 Reporting the m6A-centered Drug Response of This Target Gene | [17] | |||
Responsed Disease | Pancreatic cancer | ICD-11: 2C10 | ||
Pathway Response | Adipocytokine signaling pathway | hsa04920 | ||
Cell Process | Epithelial-mesenchymal transition | |||
In-vitro Model | BxPC-3 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0186 |
HDE-CT cell line (A normal human pancreatic cell line) | ||||
MIA PaCa-2 | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0428 | |
Response Summary | Lasso regression identified a six-m6A-regulator-signature prognostic model (KIAA1429, HNRNPC, METTL3, YTHDF1, IGF2BP2, and IGF2BP3). Gene set enrichment analysis revealed m6A regulators (KIAA1429, HNRNPC, and IGF2BP2) were related to multiple biological behaviors in pancreatic cancer, including adipocytokine signaling, the well vs. poorly differentiated tumor pathway, tumor metastasis pathway, epithelial mesenchymal transition pathway, gemcitabine resistance pathway, and stemness pathway. | |||
Teniposide
[Approved]
In total 1 item(s) under this drug | ||||
Experiment 1 Reporting the m6A-centered Drug Response of This Target Gene | [18] | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulation | Up regulation | |||
Pathway Response | Nucleotide excision repair | hsa03420 | ||
mTOR signaling pathway | hsa04150 | |||
Cell Process | DNA repair | |||
In-vitro Model | Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
In-vivo Model | To establish a tumour model, C57BL/6 mice were intraperitoneal injected with 25 mg/kg diethylnitrosamine at 2 weeks of age. | |||
Response Summary | The m6A model includes LRPPRC, YTHDF2, KIAA14219, and RBM15B, classified A-hepatocellular carcinoma patients into high/low-risk subtypes. The expression of Immunosuppressive cytokines DNMT1/EZH2 was up-regulated in A-hepatocellular carcinoma patients, and teniposide can be a potential therapeutic drug for A-hepatocellular carcinoma. | |||
Xenobiotics Compound(s) Regulating the m6A Methylation Regulator
Compound Name | 5-FU | Approved |
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Synonyms |
5-Fluorouracil; 51-21-8; fluorouracil; 5-FU; Fluoroplex; Adrucil; Efudex; Carac; Fluracil; Fluoroblastin; 5-fluoropyrimidine-2,4(1H,3H)-dione; Kecimeton; Timazin; Carzonal; Efudix; Arumel; Fluril; Queroplex; Fluracilum; Ulup; 5-Fluoracil; Phthoruracil; Fluro Uracil; 5-Fluoro-2,4(1H,3H)-pyrimidinedione; Ftoruracil; Fluorouracilum; Efurix; Fluri; 5 Fluorouracil; Effluderm (free base); 5-fluoro-1H-pyrimidine-2,4-dione; Fluorouracilo; Fluroblastin; Phtoruracil; 2,4-Dihydroxy-5-fluoropyrimidine; 2,4(1H,3H)-Pyrimidinedione, 5-fluoro-; Adrucil; Effluderm; Fluorouracile; Fluoruracil; Fluracedyl; Flurodex; Neofluor; Onkofluor; Ribofluor; Tetratogen; URF; Allergan Brand of Fluorouracil; Biosyn Brand of Fluorouracil; CSP Brand of Fluorouracil; Cinco FU; Dakota Brand of Fluorouracil; Dermatech Brand of Fluorouracil; Dermik Brandof Fluorouracil; Ferrer Brand of Fluorouracil; Fluoro Uracile ICN; Fluorouracil GRY; Fluorouracil Mononitrate; Fluorouracil Monopotassium Salt; Fluorouracil Monosodium Salt; Fluorouracil Potassium Salt; Fluorouracil Teva Brand; Fluorouracile Dakota; Fluorouracile [DCIT]; Fluorouracilo Ferrer Far; Gry Brand of Fluorouracil; Haemato Brand of Fluorouracil; Haemato fu; Hexal Brand of Fluorouracil; ICN Brand of Fluorouracil; Inhibits thymilidate synthetase; Medac Brand of Fluorouracil; Neocorp Brand of Fluorouracil; Onkoworks Brand of Fluorouracil; Ribosepharm Brand of Fluorouracil; Riemser Brand of Fluorouracil; Roche Brand of Fluorouracil; Teva Brand of Fluorouracil; F 6627; F0151; IN1335; U 8953; Adrucil (TN); Carac (TN); Dakota, Fluorouracile; Efudex (TN); Fluoro-Uracile ICN; Fluoro-uracile; Fluoro-uracilo; Fluoroplex (TN); Fluorouracil-GRY; Fluorouracilo [INN-Spanish]; Fluorouracilum [INN-Latin]; Haemato-fu; Ro 2-9757; U-8953; Ro-2-9757; Fluorouracil (JP15/USP/INN); Fluorouracil [USAN:INN:BAN:JAN]; 1-fluoro-1h-pyrimidine-2,4-dione; 2,4-Dioxo-5-fluoropryimidine; 2,4-Dioxo-5-fluoropyrimidine; 5 FU Lederle; 5 FU medac; 5 Fluorouracil biosyn; 5 HU Hexal; 5-FU (TN); 5-FU Lederle; 5-FU medac; 5-Faracil; 5-Fluor-2,4(1H,3H)-pyrimidindion; 5-Fluor-2,4(1H,3H)-pyrimidindion [Czech]; 5-Fluor-2,4-dihydroxypyrimidin; 5-Fluor-2,4-dihydroxypyrimidin [Czech]; 5-Fluor-2,4-pyrimidindiol; 5-Fluor-2,4-pyrimidindiol [Czech]; 5-Fluoracil [German]; 5-Fluoracyl; 5-Fluoro-2,4-pyrimidinedione; 5-Fluoropyrimidin-2,4-diol; 5-Fluoropyrimidine-2,4-dione; 5-Fluorouracil-biosyn; 5-Fluoruracil; 5-Fluoruracil [German]; 5-Ftouracyl; 5-HU Hexal; 5-fluoro uracil; 5FU
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External link | ||
Description |
KIAA1429 acts as an oncogenic factor inbreast cancer by regulating CDK1 in an N6-methyladenosine-independent manner.5'-fluorouracil was found to be very effective in reducing the expression of KIAA1429 andCDK1 in breast cancer.
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[1] |
Compound Name | . | Investigative |
References