m6A Target Genes of This Regulator
General Information of the m6A Regulator (ID: REG00015)
| Regulator Name | Protein virilizer homolog (VIRMA) | ||||
|---|---|---|---|---|---|
| Synonyms |
KIAA1429; MSTP054
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| Gene Name | VIRMA | ||||
| Regulator Type | ERASER READER WRITER | ||||
| Regulator Link | Click to View Full Information of This Regulator | ||||
Full List of Target Gene(s) of This m6A Regulator
(
Full Data Download
)
Protein coding
Gene with protein product
| In total 1902 target gene(s) | ||||
| 3-phosphoinositide dependent protein kinase 1 (PDPK1) | [1] | |||
| HGNC ID | HGNC:8816 | |||
| Ensembl ID | ENSG00000140992 | |||
| Uniprot ID | PDPK1_HUMAN | |||
| Method | RIP-seq | logFC: 1.25E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| 5'-3' exoribonuclease 1 (XRN1) | [1] | |||
| HGNC ID | HGNC:30654 | |||
| Ensembl ID | ENSG00000114127 | |||
| Uniprot ID | XRN1_HUMAN | |||
| Method | RIP-seq | logFC: 1.21E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| A-kinase anchoring protein 12 (AKAP12) | [1] | |||
| HGNC ID | HGNC:370 | |||
| Ensembl ID | ENSG00000131016 | |||
| Uniprot ID | AKA12_HUMAN | |||
| Method | RIP-seq | logFC: 1.38E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| A-kinase anchoring protein 13 (AKAP13) | [1] | |||
| HGNC ID | HGNC:371 | |||
| Ensembl ID | ENSG00000170776 | |||
| Uniprot ID | AKP13_HUMAN | |||
| Method | RIP-seq | logFC: 1.42E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| A-kinase anchoring protein 6 (AKAP6) | [1] | |||
| HGNC ID | HGNC:376 | |||
| Ensembl ID | ENSG00000151320 | |||
| Uniprot ID | AKAP6_HUMAN | |||
| Method | RIP-seq | logFC: 1.94E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Abhydrolase domain containing 2, acylglycerol lipase (ABHD2) | [1] | |||
| HGNC ID | HGNC:18717 | |||
| Ensembl ID | ENSG00000140526 | |||
| Uniprot ID | ABHD2_HUMAN | |||
| Method | RIP-seq | logFC: 1.72E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| ABI family member 3 (ABI3) | [1] | |||
| HGNC ID | HGNC:29859 | |||
| Ensembl ID | ENSG00000108798 | |||
| Uniprot ID | ABI3_HUMAN | |||
| Method | RIP-seq | logFC: 3.77E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| ABL proto-oncogene 2, non-receptor tyrosine kinase (ABL2) | [1] | |||
| HGNC ID | HGNC:77 | |||
| Ensembl ID | ENSG00000143322 | |||
| Uniprot ID | ABL2_HUMAN | |||
| Method | RIP-seq | logFC: 1.26E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Achaete-scute family bHLH transcription factor 2 (ASCL2) | [1] | |||
| HGNC ID | HGNC:739 | |||
| Ensembl ID | ENSG00000183734 | |||
| Uniprot ID | ASCL2_HUMAN | |||
| Method | RIP-seq | logFC: 3.17E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Achaete-scute family bHLH transcription factor 5 (ASCL5) | [1] | |||
| HGNC ID | HGNC:33169 | |||
| Ensembl ID | ENSG00000232237 | |||
| Uniprot ID | ASCL5_HUMAN | |||
| Method | RIP-seq | logFC: 1.25E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Pseudogene
Immunoglobulin pseudogene
| In total 1 target gene(s) | ||||
| Immunoglobulin heavy constant epsilon P2 (pseudogene) (IGHEP2) | [1] | |||
| HGNC ID | HGNC:5524 | |||
| Ensembl ID | ENSG00000254017 | |||
| Method | RIP-seq | logFC: 1.83E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Pseudogene
| In total 315 target gene(s) | ||||
| 3-phosphoinositide dependent protein kinase 2, pseudogene (PDPK2P) | [1] | |||
| HGNC ID | HGNC:49897 | |||
| Ensembl ID | ENSG00000205918 | |||
| Uniprot ID | PDPK2_HUMAN | |||
| Method | RIP-seq | logFC: 3.07E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| ABHD17A pseudogene 1 (ABHD17AP1) | [1] | |||
| HGNC ID | HGNC:28394 | |||
| Ensembl ID | ENSG00000198658 | |||
| Method | RIP-seq | logFC: 1.91E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| ABHD17A pseudogene 3 (ABHD17AP3) | [1] | |||
| HGNC ID | HGNC:34041 | |||
| Ensembl ID | ENSG00000250536 | |||
| Method | RIP-seq | logFC: 1.92E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| ACTB pseudogene 7 (ACTBP7) | [1] | |||
| HGNC ID | HGNC:140 | |||
| Ensembl ID | ENSG00000185607 | |||
| Method | RIP-seq | logFC: 5.04E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Actin gamma 1 pseudogene 1 (ACTG1P1) | [1] | |||
| HGNC ID | HGNC:146 | |||
| Ensembl ID | ENSG00000178631 | |||
| Method | RIP-seq | logFC: 1.47E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Actin gamma 1 pseudogene 10 (ACTG1P10) | [1] | |||
| HGNC ID | HGNC:155 | |||
| Ensembl ID | ENSG00000231340 | |||
| Method | RIP-seq | logFC: 2.20E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Actin gamma 1 pseudogene 14 (ACTG1P14) | [1] | |||
| HGNC ID | HGNC:49751 | |||
| Ensembl ID | ENSG00000230581 | |||
| Method | RIP-seq | logFC: 2.48E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Actin gamma 1 pseudogene 3 (ACTG1P3) | [1] | |||
| HGNC ID | HGNC:148 | |||
| Ensembl ID | ENSG00000215388 | |||
| Method | RIP-seq | logFC: 3.50E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| ADAM metallopeptidase domain 1A (pseudogene) (ADAM1A) | [1] | |||
| HGNC ID | HGNC:187 | |||
| Ensembl ID | ENSG00000229186 | |||
| Method | RIP-seq | logFC: 3.32E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| ADAM metallopeptidase domain 20 pseudogene 1 (ADAM20P1) | [1] | |||
| HGNC ID | HGNC:20102 | |||
| Ensembl ID | ENSG00000259158 | |||
| Method | RIP-seq | logFC: 1.26E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Long non-coding
Long non-coding RNA
| In total 230 target gene(s) | ||||
| ADARB2 antisense RNA 1 (ADARB2-AS1) | [1] | |||
| HGNC ID | HGNC:23299 | |||
| Ensembl ID | ENSG00000205696 | |||
| Uniprot ID | ADAS1_HUMAN | |||
| Method | RIP-seq | logFC: 2.87E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Apoptosis associated transcript in bladder cancer (AATBC) | [1] | |||
| HGNC ID | HGNC:51526 | |||
| Ensembl ID | ENSG00000215458 | |||
| Method | RIP-seq | logFC: 2.82E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| ASTN2 antisense RNA 1 (ASTN2-AS1) | [1] | |||
| HGNC ID | HGNC:51175 | |||
| Ensembl ID | ENSG00000229105 | |||
| Method | RIP-seq | logFC: 1.32E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| ATP11A antisense RNA 1 (ATP11A-AS1) | [1] | |||
| HGNC ID | HGNC:40645 | |||
| Ensembl ID | ENSG00000232684 | |||
| Method | RIP-seq | logFC: 2.65E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| ATP11A upstream neighbor lncRNA (ATP11AUN) | [1] | |||
| HGNC ID | HGNC:33793 | |||
| Ensembl ID | ENSG00000197595 | |||
| Uniprot ID | ATPUN_HUMAN | |||
| Method | RIP-seq | logFC: 2.81E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| C1RL antisense RNA 1 (C1RL-AS1) | [1] | |||
| HGNC ID | HGNC:27461 | |||
| Ensembl ID | ENSG00000205885 | |||
| Method | RIP-seq | logFC: 1.27E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| CATIP antisense RNA 2 (CATIP-AS2) | [1] | |||
| HGNC ID | HGNC:41079 | |||
| Ensembl ID | ENSG00000237281 | |||
| Method | RIP-seq | logFC: 3.91E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| CCDC183 antisense RNA 1 (CCDC183-AS1) | [1] | |||
| HGNC ID | HGNC:44105 | |||
| Ensembl ID | ENSG00000228544 | |||
| Method | RIP-seq | logFC: 1.15E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| COL18A1 antisense RNA 1 (COL18A1-AS1) | [1] | |||
| HGNC ID | HGNC:23132 | |||
| Ensembl ID | ENSG00000183535 | |||
| Method | RIP-seq | logFC: 3.14E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| COL4A2 antisense RNA 1 (COL4A2-AS1) | [1] | |||
| HGNC ID | HGNC:40156 | |||
| Ensembl ID | ENSG00000232814 | |||
| Method | RIP-seq | logFC: 1.17E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Short non-coding
Micro RNA
| In total 1 target gene(s) | ||||
| MicroRNA 7111 (MIR7111) | [3] | |||
| HGNC ID | HGNC:50073 | |||
| Ensembl ID | ENSG00000276712 | |||
| Method | RNA-seq | GSE185494 | ||
| Condition | knock out | |||
| Evidence | logFC: 1.693989867; p-value: 0.002419257 | |||
| Cell Line | MDA-MB-231 cell line | Breast cancer | Homo sapiens | CVCL_0062 |
| Click to Download All Target Gene of This Genetic Class | ||||
Misc RNA
| In total 1 target gene(s) | ||||
| Telomerase RNA component (TERC) | [1] | |||
| HGNC ID | HGNC:11727 | |||
| Ensembl ID | ENSG00000270141 | |||
| Method | RIP-seq | logFC: 6.06E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Ribosomal RNA
| In total 1 target gene(s) | ||||
| RNA, 5S ribosomal 9 (RNA5S9) | [1] | |||
| HGNC ID | HGNC:34370 | |||
| Ensembl ID | ENSG00000201321 | |||
| Method | RIP-seq | logFC: 4.72E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Small nuclear RNA
| In total 22 target gene(s) | ||||
| RNA, U1 small nuclear 1 (RNU1-1) | [1] | |||
| HGNC ID | HGNC:10120 | |||
| Ensembl ID | ENSG00000206652 | |||
| Method | RIP-seq | logFC: 2.09E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| RNA, U1 small nuclear 2 (RNU1-2) | [1] | |||
| HGNC ID | HGNC:10123 | |||
| Ensembl ID | ENSG00000207005 | |||
| Method | RIP-seq | logFC: 1.38E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| RNA, U1 small nuclear 3 (RNU1-3) | [1] | |||
| HGNC ID | HGNC:10130 | |||
| Ensembl ID | ENSG00000207513 | |||
| Method | RIP-seq | logFC: 2.09E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| RNA, U1 small nuclear 4 (RNU1-4) | [1] | |||
| HGNC ID | HGNC:10128 | |||
| Ensembl ID | ENSG00000207389 | |||
| Method | RIP-seq | logFC: 1.38E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| RNA, U12 small nuclear (RNU12) | [1] | |||
| HGNC ID | HGNC:19380 | |||
| Ensembl ID | ENSG00000276027 | |||
| Method | RIP-seq | logFC: 5.63E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| RNA, U2 small nuclear 1 (RNU2-1) | [1] | |||
| HGNC ID | HGNC:10142 | |||
| Ensembl ID | ENSG00000274585 | |||
| Method | RIP-seq | logFC: 4.21E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| RNA, U4 small nuclear 1 (RNU4-1) | [1] | |||
| HGNC ID | HGNC:10192 | |||
| Ensembl ID | ENSG00000200795 | |||
| Method | RIP-seq | logFC: 2.87E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| RNA, U4 small nuclear 2 (RNU4-2) | [1] | |||
| HGNC ID | HGNC:10193 | |||
| Ensembl ID | ENSG00000202538 | |||
| Method | RIP-seq | logFC: 3.87E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| RNA, U4atac small nuclear (RNU4ATAC) | [1] | |||
| HGNC ID | HGNC:34016 | |||
| Ensembl ID | ENSG00000264229 | |||
| Method | RIP-seq | logFC: 4.01E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| RNA, U5A small nuclear 1 (RNU5A-1) | [1] | |||
| HGNC ID | HGNC:10211 | |||
| Ensembl ID | ENSG00000199568 | |||
| Method | RIP-seq | logFC: 7.24E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Small nucleolar RNA
| In total 89 target gene(s) | ||||
| Small Cajal body-specific RNA 1 (SCARNA1) | [1] | |||
| HGNC ID | HGNC:32555 | |||
| Ensembl ID | ENSG00000252947 | |||
| Method | RIP-seq | logFC: 5.50E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Small Cajal body-specific RNA 10 (SCARNA10) | [1] | |||
| HGNC ID | HGNC:32567 | |||
| Ensembl ID | ENSG00000239002 | |||
| Method | RIP-seq | logFC: 7.82E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Small Cajal body-specific RNA 12 (SCARNA12) | [1] | |||
| HGNC ID | HGNC:32569 | |||
| Ensembl ID | ENSG00000238795 | |||
| Method | RIP-seq | logFC: 5.84E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Small Cajal body-specific RNA 13 (SCARNA13) | [1] | |||
| HGNC ID | HGNC:32570 | |||
| Ensembl ID | ENSG00000252481 | |||
| Method | RIP-seq | logFC: 5.22E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Small Cajal body-specific RNA 14 (SCARNA14) | [1] | |||
| HGNC ID | HGNC:32571 | |||
| Ensembl ID | ENSG00000252712 | |||
| Method | RIP-seq | logFC: 4.21E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Small Cajal body-specific RNA 16 (SCARNA16) | [1] | |||
| HGNC ID | HGNC:32573 | |||
| Ensembl ID | ENSG00000275143 | |||
| Method | RIP-seq | logFC: 3.53E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Small Cajal body-specific RNA 18 (SCARNA18) | [1] | |||
| HGNC ID | HGNC:32559 | |||
| Ensembl ID | ENSG00000238835 | |||
| Method | RIP-seq | logFC: 5.59E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Small Cajal body-specific RNA 2 (SCARNA2) | [1] | |||
| HGNC ID | HGNC:32558 | |||
| Ensembl ID | ENSG00000278249 | |||
| Method | RIP-seq | logFC: 7.20E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Small Cajal body-specific RNA 20 (SCARNA20) | [1] | |||
| HGNC ID | HGNC:32578 | |||
| Ensembl ID | ENSG00000252577 | |||
| Method | RIP-seq | logFC: 3.70E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Small Cajal body-specific RNA 21 (SCARNA21) | [1] | |||
| HGNC ID | HGNC:32579 | |||
| Ensembl ID | ENSG00000252835 | |||
| Method | RIP-seq | logFC: 4.33E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Vault RNA
| In total 1 target gene(s) | ||||
| Vault RNA 1-1 (VTRNA1-1) | [1] | |||
| HGNC ID | HGNC:12654 | |||
| Ensembl ID | ENSG00000199990 | |||
| Method | RIP-seq | logFC: 5.58E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Other
Endogenous retrovirus
| In total 1 target gene(s) | ||||
| Endogenous retrovirus group K member 28 (ERVK-28) | [1] | |||
| HGNC ID | HGNC:44981 | |||
| Ensembl ID | ENSG00000267696 | |||
| Method | RIP-seq | logFC: 2.54E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Immunoglobulin gene
| In total 1 target gene(s) | ||||
| Immunoglobulin lambda variable 5-52 (IGLV5-52) | [1] | |||
| HGNC ID | HGNC:5926 | |||
| Ensembl ID | ENSG00000211643 | |||
| Uniprot ID | LV552_HUMAN | |||
| Method | RIP-seq | logFC: 1.06E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Protocadherin
| In total 13 target gene(s) | ||||
| Protocadherin beta 12 (PCDHB12) | [1] | |||
| HGNC ID | HGNC:8683 | |||
| Ensembl ID | ENSG00000120328 | |||
| Uniprot ID | PCDBC_HUMAN | |||
| Method | RIP-seq | logFC: 1.07E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Protocadherin beta 8 (PCDHB8) | [1] | |||
| HGNC ID | HGNC:8693 | |||
| Ensembl ID | ENSG00000120322 | |||
| Uniprot ID | PCDB8_HUMAN | |||
| Method | RIP-seq | logFC: 1.15E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Protocadherin gamma subfamily A, 4 (PCDHGA4) | [1] | |||
| HGNC ID | HGNC:8702 | |||
| Ensembl ID | ENSG00000262576 | |||
| Uniprot ID | PCDG4_HUMAN | |||
| Method | RIP-seq | logFC: 1.62E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Protocadherin gamma subfamily A, 5 (PCDHGA5) | [1] | |||
| HGNC ID | HGNC:8703 | |||
| Ensembl ID | ENSG00000253485 | |||
| Uniprot ID | PCDG5_HUMAN | |||
| Method | RIP-seq | logFC: 1.87E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Protocadherin gamma subfamily A, 7 (PCDHGA7) | [1] | |||
| HGNC ID | HGNC:8705 | |||
| Ensembl ID | ENSG00000253537 | |||
| Uniprot ID | PCDG7_HUMAN | |||
| Method | RIP-seq | logFC: 1.26E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Protocadherin gamma subfamily B, 1 (PCDHGB1) | [1] | |||
| HGNC ID | HGNC:8708 | |||
| Ensembl ID | ENSG00000254221 | |||
| Uniprot ID | PCDGD_HUMAN | |||
| Method | RIP-seq | logFC: 3.56E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Protocadherin gamma subfamily B, 2 (PCDHGB2) | [1] | |||
| HGNC ID | HGNC:8709 | |||
| Ensembl ID | ENSG00000253910 | |||
| Uniprot ID | PCDGE_HUMAN | |||
| Method | RIP-seq | logFC: 1.77E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Protocadherin gamma subfamily B, 3 (PCDHGB3) | [1] | |||
| HGNC ID | HGNC:8710 | |||
| Ensembl ID | ENSG00000262209 | |||
| Uniprot ID | PCDGF_HUMAN | |||
| Method | RIP-seq | logFC: 1.65E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Protocadherin gamma subfamily B, 4 (PCDHGB4) | [1] | |||
| HGNC ID | HGNC:8711 | |||
| Ensembl ID | ENSG00000253953 | |||
| Uniprot ID | PCDGG_HUMAN | |||
| Method | RIP-seq | logFC: 1.58E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Protocadherin gamma subfamily B, 5 (PCDHGB5) | [1] | |||
| HGNC ID | HGNC:8712 | |||
| Ensembl ID | ENSG00000276547 | |||
| Uniprot ID | PCDGH_HUMAN | |||
| Method | RIP-seq | logFC: 4.09E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Click to Download All Target Gene of This Genetic Class | ||||
Readthrough
| In total 13 target gene(s) | ||||
| ARHGAP19-SLIT1 readthrough (NMD candidate) (ARHGAP19-SLIT1) | [1] | |||
| HGNC ID | HGNC:48348 | |||
| Ensembl ID | ENSG00000269891 | |||
| Method | RIP-seq | logFC: 4.51E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| BIVM-ERCC5 readthrough (BIVM-ERCC5) | [1] | |||
| HGNC ID | HGNC:43690 | |||
| Ensembl ID | ENSG00000270181 | |||
| Method | RIP-seq | logFC: 4.95E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| DNAAF4-CCPG1 readthrough (NMD candidate) (DYX1C1-CCPG1) | [1] | |||
| HGNC ID | HGNC:43019 | |||
| Ensembl ID | ENSG00000261771 | |||
| Method | RIP-seq | logFC: 1.21E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| FPGT-TNNI3K readthrough (FPGT-TNNI3K) | [1] | |||
| HGNC ID | HGNC:42952 | |||
| Ensembl ID | ENSG00000259030 | |||
| Method | RIP-seq | logFC: 1.49E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| NPHP3-ACAD11 readthrough (NMD candidate) (NPHP3-ACAD11) | [1] | |||
| HGNC ID | HGNC:48351 | |||
| Ensembl ID | ENSG00000274810 | |||
| Method | RIP-seq | logFC: 1.97E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| RPL36A-HNRNPH2 readthrough (RPL36A-HNRNPH2) | [1] | |||
| HGNC ID | HGNC:48349 | |||
| Ensembl ID | ENSG00000257529 | |||
| Method | RIP-seq | logFC: 1.10E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| STON1-GTF2A1L readthrough (STON1-GTF2A1L) | [1] | |||
| HGNC ID | HGNC:30651 | |||
| Ensembl ID | ENSG00000068781 | |||
| Method | RIP-seq | logFC: 3.92E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| SYS1-DBNDD2 readthrough (NMD candidate) (SYS1-DBNDD2) | [1] | |||
| HGNC ID | HGNC:33535 | |||
| Ensembl ID | ENSG00000254806 | |||
| Method | RIP-seq | logFC: 2.59E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| TRIM6-TRIM34 readthrough (TRIM6-TRIM34) | [1] | |||
| HGNC ID | HGNC:33440 | |||
| Ensembl ID | ENSG00000258588 | |||
| Method | RIP-seq | logFC: 3.37E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| GCOM1, MYZAP-POLR2M combined locus (GCOM1) | [2] | |||
| HGNC ID | HGNC:26424 | |||
| Ensembl ID | ENSG00000137878 | |||
| Method | RNA-seq | GSE167067 | ||
| Condition | knock down | |||
| Evidence | logFC: 1.086119513; p-value: 1.56E-16 | |||
| Cell Line | Human umbilical vein endothelial cells | Healthy | Homo sapiens | . |
| Click to Download All Target Gene of This Genetic Class | ||||
T cell receptor gene
| In total 2 target gene(s) | ||||
| T cell receptor beta variable 20/OR9-2 (non-functional) (TRBV20OR9-2) | [1] | |||
| HGNC ID | HGNC:12197 | |||
| Ensembl ID | ENSG00000205274 | |||
| Method | RIP-seq | logFC: 1.50E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| T cell receptor beta variable 12-4 (TRBV12-4) | [2] | |||
| HGNC ID | HGNC:12186 | |||
| Ensembl ID | ENSG00000276953 | |||
| Uniprot ID | TVBL4_HUMAN | |||
| Method | RNA-seq | GSE167067 | ||
| Condition | knock down | |||
| Evidence | logFC: -0.592849926; p-value: 0.036580566 | |||
| Cell Line | Human umbilical vein endothelial cells | Healthy | Homo sapiens | . |
| Click to Download All Target Gene of This Genetic Class | ||||
Unknown
| In total 4 target gene(s) | ||||
| elongin A3, pseudogene (TCEB3C) | [1] | |||
| HGNC ID | HGNC:24617 | |||
| Ensembl ID | ENSG00000288631 | |||
| Method | RIP-seq | logFC: 6.71E+00 | GSE102493 | |
| Cell Line | HeLa | Cervical cancer | Homo sapiens | CVCL_0030 |
| Chromosome 1 putative open reading frame 220 (C1orf220) | [3] | |||
| HGNC ID | HGNC:33805 | |||
| Ensembl ID | ENSG00000213057 | |||
| Uniprot ID | CA220_HUMAN | |||
| Method | RNA-seq | GSE185494 | ||
| Condition | knock out | |||
| Evidence | logFC: -1.690573646; p-value: 0.004975623 | |||
| Cell Line | MDA-MB-231 cell line | Breast cancer | Homo sapiens | CVCL_0062 |
| Chromosome 22 putative open reading frame 46 (C22orf46) | [3] | |||
| HGNC ID | HGNC:26294 | |||
| Ensembl ID | ENSG00000184208 | |||
| Uniprot ID | CV046_HUMAN | |||
| Method | RNA-seq | GSE185494 | ||
| Condition | knock out | |||
| Evidence | logFC: -1.157473988; p-value: 0.020010261 | |||
| Cell Line | MDA-MB-231 cell line | Breast cancer | Homo sapiens | CVCL_0062 |
| Long intergenic non-protein coding RNA 672 (LINC00672) | [2] | |||
| HGNC ID | HGNC:44353 | |||
| Ensembl ID | ENSG00000263874 | |||
| Method | RNA-seq | GSE167067 | ||
| Condition | knock down | |||
| Evidence | logFC: -1.740119438; p-value: 0.014755908 | |||
| Cell Line | Human umbilical vein endothelial cells | Healthy | Homo sapiens | . |
| Click to Download All Target Gene of This Genetic Class | ||||
References