m6A-centered Drug Response Information
General Information of the Drug (ID: M6ADRUG0032)
Name |
Sorafenib
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Synonyms |
Nexavar; Sorafenibum; Sorafenib [INN]; Nexavar (TN); Sorafenib (INN); N-[4-Chloro-3-(trifluoromethyl)phenyl]-N'-[4-[2-(N-methylcarbamoyl)-4-pyridyloxy]phenyl]urea; N-(4-Chloro-3-(trifluoromethyl)phenyl)-N'-(4-(2-(N-methylcarbamoyl)-4-pyridyloxy)phenyl)urea; N-(4-chloro-3-(trifluoromethyl)phenyl)-N'-(4-(2-(N-methylcar bamoyl)-4-pyridyloxy)phenyl)urea; 4(4-{3-[4-Chloro-3-(trifluoromethyl)phenyl]ureido}phenoxy)-N(sup 2)-methylpyridine-2-carboxamide; 4-(4-((((4-Chloro-3-(trifluoromethyl)phenyl)amino)carbonyl)amino)phenoxy)-N-methyl-2-pyridinecarboxamide; 4-(4-(3-(4-chloro-3-trifluoromethylphenyl)ureido)phenoxy)pyridine-2-carboxyllic acid methyamide-4-methylbenzenesulfonate; 4-(4-{3-(4-Chloro-3-(trifluoromethyl)phenyl)ureido}phenoxy)-N(sup 2)-methylpyridine-2-carboxamide; 4-[4-({[4-chloro-3-(trifluoromethyl)phenyl]carbamoyl}amino)phenoxy]-N-methylpyridine-2-carboxamide; 4-[4-[[4-chloro-3-(trifluoromethyl)phenyl]carbamoylamino]phenoxy]-N-methyl-pyridine-2-carboxamide; 4-[4-[[4-chloro-3-(trifluoromethyl)phenyl]carbamoylamino]phenoxy]-N-methylpyridine-2-carboxamide; 4-[4-[[[[4-chloro-3-(trifluoromethyl)phenyl]amino]carbonyl]amino]phenoxy]-N-methyl-2-pyridinecarboxamide; 4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE; Sorafenib (Pan-TK inhibitor)
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Status | Approved | [1] | |||
Structure |
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Formula |
C21H16ClF3N4O3
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InChI |
InChI=1S/C21H16ClF3N4O3/c1-26-19(30)18-11-15(8-9-27-18)32-14-5-2-12(3-6-14)28-20(31)29-13-4-7-17(22)16(10-13)21(23,24)25/h2-11H,1H3,(H,26,30)(H2,28,29,31)
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InChIKey |
MLDQJTXFUGDVEO-UHFFFAOYSA-N
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PubChem CID | |||||
TTD Drug ID | |||||
DrugBank ID |
Full List of m6A Targets Related to This Drug
Autophagy protein 5 (ATG5)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising forkhead box class O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including ATG3, Autophagy protein 5 (ATG5), ATG12, and ATG16L1. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Autophagy | hsa04140 | |||
Cell Process | Cell autophagy | |||
Experiment 2 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising forkhead box class O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including ATG3, Autophagy protein 5 (ATG5), ATG7, ATG12, and ATG16L1. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | YTH domain-containing family protein 1 (YTHDF1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Autophagy | hsa04140 | |||
Cell Process | Cell autophagy | |||
Autophagy-related protein 16-1 (ATG16L1)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising forkhead box class O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including ATG3, ATG5, ATG7, ATG12, and Autophagy-related protein 16-1 (ATG16L1). | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Autophagy | hsa04140 | |||
Cell Process | Cell autophagy | |||
Experiment 2 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising forkhead box class O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including ATG3, ATG5, ATG7, ATG12, and Autophagy-related protein 16-1 (ATG16L1). | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | YTH domain-containing family protein 1 (YTHDF1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Autophagy | hsa04140 | |||
Cell Process | Cell autophagy | |||
Beclin-1 (BECN1)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [3] | |||
Response Summary | Analyzed the effect of sorafenib on HSC ferroptosis and m6A modification in advanced fibrotic patients with hepatocellular carcinoma receiving sorafenib monotherapy. YTHDF1 promotes Beclin-1 (BECN1) mRNA stability and autophagy activation via recognizing the m6A binding site within BECN1 coding regions. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | YTH domain-containing family protein 1 (YTHDF1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | Ferroptosis | hsa04216 | ||
Autophagy | hsa04140 | |||
Cell Process | Ferroptosis | |||
Cell autophagy | ||||
In-vitro Model | HSC (Hematopoietic stem cell) | |||
In-vivo Model | VA-Lip-Mettl4-shRNA, VA-Lip-Fto-Plasmid and VA-Lip-Ythdf1-shRNA (0.75 mg/kg) were injected intravenously 3 times a week. | |||
Forkhead box protein O3 (FOXO3)
In total 3 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [4] | |||
Response Summary | METTL3 and Forkhead box protein O3 (FOXO3) levels are tightly correlated in hepatocellular carcinoma patients. In mouse xenograft models, METTL3 depletion significantly enhances sorafenib resistance of HCC by abolishing the identified METTL3-mediated FOXO3 mRNA stabilization, and overexpression of FOXO3 restores m6 A-dependent sorafenib sensitivity. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Down regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Cell Process | Cell Transport | |||
Cell catabolism | ||||
Cell autophagy | ||||
In-vitro Model | HEK293T | Normal | Homo sapiens | CVCL_0063 |
Hepa 1-6 | Hepatocellular carcinoma of the mouse | Mus musculus | CVCL_0327 | |
Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 | |
HUVEC-C | Normal | Homo sapiens | CVCL_2959 | |
WRL 68 | Endocervical adenocarcinoma | Homo sapiens | CVCL_0581 | |
In-vivo Model | For the drug-resistant subcutaneous tumor models, drug administration was adopted when the tumors reached about 50 mm3 in size, at which point mice were randomized for treatment with DMSO(intraperitoneally) or sorafenib (50 mg/kg/every 2 days, intraperitoneally). For the patient-derived tumor xenograft model, drug administration began 4 weeks after tumors reached about 100 mm3 in size with sorafenib (50 mg/kg/every 3 days, intraperitoneally) or siCtrl/siMETTL3 intratumor injection. | |||
Experiment 2 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising Forkhead box protein O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including ATG3, ATG5, ATG7, ATG12, and ATG16L1. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Cell Process | Cell autophagy | |||
Experiment 3 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising Forkhead box protein O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including ATG3, ATG5, ATG7, ATG12, and ATG16L1. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | YTH domain-containing family protein 1 (YTHDF1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Cell Process | Cell autophagy | |||
Hepatocyte nuclear factor 3-gamma (HNF3gamma/FOXA3)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [5] | |||
Response Summary | The Hepatocyte nuclear factor 3-gamma (HNF3gamma/FOXA3) reduction in hepatocellular carcinoma could be mediated by METTL14-dependent m6A methylation of HNF3-Gamma mRNA. HNF3-Gamma plays an essential role in HCC differentiation and serves as a therapeutic target and predictor of sorafenib benefit in patients. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | Methyltransferase-like 14 (METTL14) | WRITER | ||
Target Regulation | Down regulation | |||
Cell Process | Membrane transport | |||
Cell apoptosis | ||||
In-vitro Model | HCCLM3 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_6832 |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
In-vivo Model | When xenografted tumor growth reached 500 mm3, the mice were subjected to intratumoral injection of Ad-con or Ad-HNF3γ every other day. For the PDX model, fresh patient HCC tissues were cut into fragments with a volume of 3 × 3 mm3 and then implanted subcutaneously into the flanks of nude mice. The mice were given sorafenib (30 mg/kg) or vehicle orally twice a week for 24 days. | |||
Translocating chain-associated membrane protein 2 (TRAM2)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [6] | |||
Response Summary | Overexpression of RBM15B promotes HCC cell proliferation and invasion and induces sorafenib resistance in HCC cells. RBM15B is transcriptionally activated by YY1 and regulates the stability of Translocating chain-associated membrane protein 2 (TRAM2) mRNA in an m6A-dependent manner. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | RNA-binding motif protein 15B (RBM15B) | WRITER | ||
Target Regulation | Up regulation | |||
In-vitro Model | SK-HEP-1 | Liver and intrahepatic bile duct epithelial neoplasm | Homo sapiens | CVCL_0525 |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
L-02 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6926 | |
Hep-G2.215 (Hep-G2.215 were purchased from the Shanghai Cell Bank of the Chinese Academy of Sciences) | ||||
Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 | |
HCCLM3 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_6832 | |
7721 (Human hepatic malignant cell line) | ||||
In-vivo Model | HCC-LM3 cells transfected with sh-NC and sh-RBM15B-3 were injected into the axilla or tail vein of mice. | |||
Ubiquitin-like modifier-activating enzyme ATG7 (ATG7)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising forkhead box class O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including ATG3, ATG5, Ubiquitin-like modifier-activating enzyme ATG7 (ATG7), ATG12, and ATG16L1. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Autophagy | hsa04140 | |||
Cell Process | Cell autophagy | |||
Experiment 2 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising forkhead box class O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including ATG3, ATG5, Ubiquitin-like modifier-activating enzyme ATG7 (ATG7), ATG12, and ATG16L1. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | YTH domain-containing family protein 1 (YTHDF1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Autophagy | hsa04140 | |||
Cell Process | Cell autophagy | |||
Ubiquitin-like protein ATG12 (ATG12)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising forkhead box class O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including ATG3, ATG5, ATG7, Ubiquitin-like protein ATG12 (ATG12), and ATG16L1. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Autophagy | hsa04140 | |||
Cell Process | Cell autophagy | |||
Experiment 2 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising forkhead box class O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including ATG3, ATG5, ATG7, Ubiquitin-like protein ATG12 (ATG12), and ATG16L1. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | YTH domain-containing family protein 1 (YTHDF1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Autophagy | hsa04140 | |||
Cell Process | Cell autophagy | |||
Ubiquitin-like-conjugating enzyme ATG3 (ATG3)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising forkhead box class O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including Ubiquitin-like-conjugating enzyme ATG3 (ATG3), ATG5, ATG7, ATG12, and ATG16L1. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Autophagy | hsa04140 | |||
Cell Process | Cell autophagy | |||
Experiment 2 Reporting the m6A-centered Drug Response by This Target Gene | [2] | |||
Response Summary | METTL3 can sensitise hepatocellular carcinoma cells to sorafenib through stabilising forkhead box class O3 (FOXO3) in an m6A-dependent manner and translated by YTHDF1, thereby inhibiting the transcription of autophagy-related genes, including Ubiquitin-like-conjugating enzyme ATG3 (ATG3), ATG5, ATG7, ATG12, and ATG16L1. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | YTH domain-containing family protein 1 (YTHDF1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | FoxO signaling pathway | hsa04068 | ||
Autophagy | hsa04140 | |||
Cell Process | Cell autophagy | |||
Long intergenic non-protein coding RNA 1273 (LINC01273)
In total 2 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [7] | |||
Response Summary | Long intergenic non-protein coding RNA 1273 (LINC01273) was modified with m6A, METTL3 increased LINC01273 m6A modification, followed by LINC01273 decay in the presence of YTHDF2, a m6A 'reader'. And LINC01273 plays a key role in sorafenib resistant HCC cells. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Down regulation | |||
In-vitro Model | SMMC-7721 | Endocervical adenocarcinoma | Homo sapiens | CVCL_0534 |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
Experiment 2 Reporting the m6A-centered Drug Response by This Target Gene | [7] | |||
Response Summary | Long intergenic non-protein coding RNA 1273 (LINC01273) was modified with m6A, METTL3 increased LINC01273 m6A modification, followed by LINC01273 decay in the presence of YTHDF2, a m6A 'reader'. And LINC01273 plays a key role in sorafenib resistant HCC cells. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | YTH domain-containing family protein 2 (YTHDF2) | READER | ||
Target Regulation | Down regulation | |||
In-vitro Model | SMMC-7721 | Endocervical adenocarcinoma | Homo sapiens | CVCL_0534 |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
NIFK antisense RNA 1 (NIFK-AS1)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [8] | |||
Response Summary | Identified the lncRNA NIFK antisense RNA 1 (NIFK-AS1) as being highly expressed in hepatocellular carcinoma tissues and cells, promotes disease progression and sorafenib resistance, and showed this up-regulation resulted from METTL3-dependent m6A methylation. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
In-vitro Model | Hep 3B2.1-7 | Childhood hepatocellular carcinoma | Homo sapiens | CVCL_0326 |
Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 | |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
MHCC97-H | Adult hepatocellular carcinoma | Homo sapiens | CVCL_4972 | |
THLE-3 | Normal | Homo sapiens | CVCL_3804 | |
In-vivo Model | For the PDX model, fresh patient HCC tissues were cut into fragments with a volume of 3 × 3 mm3 and then implanted subcutaneously into the flanks of nude mice. The mice were given sorafenib (30 mg/kg) or vehicle orally twice a week for 24 days. This procedure was approved by the Ethics Committee of Jinling Hospital. | |||
hsa_circ_0087293 (SORE)
In total 1 item(s) under this target gene | ||||
Experiment 1 Reporting the m6A-centered Drug Response by This Target Gene | [9] | |||
Response Summary | N6-methyladenosine-modified hsa_circ_0087293 (SORE) sequestered miR-103a-2-5p and miR-660-3p by acting as a microRNA sponge, thereby competitively activating the Wnt/beta-catenin pathway and inducing sorafenib resistance in hepatocellular carcinoma. | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Cell Process | Cell apoptosis | |||
In-vitro Model | HCC sorafenib-resistant (SR) cell line HepG2-SR (Sorafenib-resistant HepG2 cell line) | |||
HCC sorafenib-resistant (SR) cell line Huh7-SR (Sorafenib-resistant Huh7 cell line) | ||||
HCC sorafenib-resistant (SR) cell line LM3-SR (Sorafenib-resistant LM3 cell line) | ||||
HCC sorafenib-resistant (SR) cell line SKhep1-SR (Sorafenib-resistant SKhep1 cell line) | ||||
In-vivo Model | The first CDX generation was constructed in 4-6 week-old male BALB/c nude mice and treated with sorafenib (30 mg/kg daily, oral gavage). Twelve weeks later, the most resistant xenograft was disaggregated and implanted subcutaneously into 4-6 week-old BALB/c nude mice as the second SR-CDX. Four weeks after implantation, the second SR-CDX mice were treated with sorafenib (30 mg/kg daily, oral gavage) and locally injected with sh-circRNA-SORE lentivirus or its negative control (twice a week for 2 weeks). | |||
References