General Information of the m6A Target Gene (ID: M6ATAR00144)
Target Name NIFK antisense RNA 1 (NIFK-AS1)
Synonyms
NIFK-AS1
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Gene Name NIFK-AS1
Chromosomal Location 2q14.3
Family Antisense RNAs
Gene ID 254128
HGNC ID
HGNC:27385
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
NIFK-AS1 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
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Methyltransferase-like 3 (METTL3) [WRITER]
Representative RIP-seq result supporting the interaction between NIFK-AS1 and the regulator
Cell Line MDA-MB-231 Homo sapiens
Regulation logFC: 7.43E+00 GSE60213
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary Identified the lncRNA NIFK antisense RNA 1 (NIFK-AS1) as being highly expressed in hepatocellular carcinoma tissues and cells, promotes disease progression and sorafenib resistance, and showed this up-regulation resulted from METTL3-dependent m6A methylation.
Target Regulation Up regulation
Responsed Disease Hepatocellular carcinoma ICD-11: 2C12.02
Responsed Drug Sorafenib Approved
In-vitro Model Hep 3B2.1-7 Childhood hepatocellular carcinoma Homo sapiens CVCL_0326
Hep-G2 Hepatoblastoma Homo sapiens CVCL_0027
Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
MHCC97-H Adult hepatocellular carcinoma Homo sapiens CVCL_4972
THLE-3 Normal Homo sapiens CVCL_3804
In-vivo Model For the PDX model, fresh patient HCC tissues were cut into fragments with a volume of 3 × 3 mm3 and then implanted subcutaneously into the flanks of nude mice. The mice were given sorafenib (30 mg/kg) or vehicle orally twice a week for 24 days. This procedure was approved by the Ethics Committee of Jinling Hospital.
Liver cancer [ICD-11: 2C12]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary Identified the lncRNA NIFK antisense RNA 1 (NIFK-AS1) as being highly expressed in hepatocellular carcinoma tissues and cells, promotes disease progression and sorafenib resistance, and showed this up-regulation resulted from METTL3-dependent m6A methylation.
Responsed Disease Hepatocellular carcinoma [ICD-11: 2C12.02]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
Responsed Drug Sorafenib Approved
In-vitro Model Hep 3B2.1-7 Childhood hepatocellular carcinoma Homo sapiens CVCL_0326
Hep-G2 Hepatoblastoma Homo sapiens CVCL_0027
Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
MHCC97-H Adult hepatocellular carcinoma Homo sapiens CVCL_4972
THLE-3 Normal Homo sapiens CVCL_3804
In-vivo Model For the PDX model, fresh patient HCC tissues were cut into fragments with a volume of 3 × 3 mm3 and then implanted subcutaneously into the flanks of nude mice. The mice were given sorafenib (30 mg/kg) or vehicle orally twice a week for 24 days. This procedure was approved by the Ethics Committee of Jinling Hospital.
Sorafenib [Approved]
In total 1 item(s) under this drug
Experiment 1 Reporting the m6A-centered Drug Response [1]
Response Summary Identified the lncRNA NIFK antisense RNA 1 (NIFK-AS1) as being highly expressed in hepatocellular carcinoma tissues and cells, promotes disease progression and sorafenib resistance, and showed this up-regulation resulted from METTL3-dependent m6A methylation.
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
Responsed Disease Hepatocellular carcinoma ICD-11: 2C12.02
In-vitro Model Hep 3B2.1-7 Childhood hepatocellular carcinoma Homo sapiens CVCL_0326
Hep-G2 Hepatoblastoma Homo sapiens CVCL_0027
Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
MHCC97-H Adult hepatocellular carcinoma Homo sapiens CVCL_4972
THLE-3 Normal Homo sapiens CVCL_3804
In-vivo Model For the PDX model, fresh patient HCC tissues were cut into fragments with a volume of 3 × 3 mm3 and then implanted subcutaneously into the flanks of nude mice. The mice were given sorafenib (30 mg/kg) or vehicle orally twice a week for 24 days. This procedure was approved by the Ethics Committee of Jinling Hospital.
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Non-coding RNA
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05504
Epigenetic Regulator NIFK antisense RNA 1 (NIFK-AS1)
Regulated Target MicroRNA 637 (MIR637)
Crosstalk relationship m6A → ncRNA
Disease Liver cancer
Drug Sorafenib
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00144)
NIFK antisense RNA 1 (NIFK-AS1)
Adenosine-to-Inosine editing (A-to-I)
In total 10 m6A sequence/site(s) in this target gene
mod ID: A2ISITE009981 Click to Show/Hide the Full List
mod site chr2:121651984-121651985:+ [2]
Sequence AGAAATGCTTGAACCCAGGAAGTGGAGGTTGTGGTGAACGG
Transcript ID List rmsk_658252; ENST00000419902.2
External Link RMBase: RNA-editing_site_79908
mod ID: A2ISITE009982 Click to Show/Hide the Full List
mod site chr2:121655747-121655748:+ [3]
Sequence CACCCAGGCTAGCATGCAGTAGCACAATTACAGCTCACCAC
Transcript ID List ENST00000419902.2
External Link RMBase: RNA-editing_site_79909
mod ID: A2ISITE009983 Click to Show/Hide the Full List
mod site chr2:121656478-121656479:+ [3]
Sequence GCATGGTGATGAATGCCTGTAATCCCAACACTTTGGAAGGC
Transcript ID List ENST00000419902.2; rmsk_658268
External Link RMBase: RNA-editing_site_79910
mod ID: A2ISITE009984 Click to Show/Hide the Full List
mod site chr2:121659303-121659304:+ [2]
Sequence TTGGCATCAGGGCTGGGCGCAGTGGCTCAGGCCTGTAATCC
Transcript ID List ENST00000419902.2; rmsk_658278
External Link RMBase: RNA-editing_site_79911
mod ID: A2ISITE009985 Click to Show/Hide the Full List
mod site chr2:121660909-121660910:+ [3]
Sequence GTGTGGTGATGGGCGCCTGTAATCCCAGCTACTTGGGAGGC
Transcript ID List ENST00000419902.2; rmsk_658284
External Link RMBase: RNA-editing_site_79912
mod ID: A2ISITE009986 Click to Show/Hide the Full List
mod site chr2:121660910-121660911:+ [3]
Sequence TGTGGTGATGGGCGCCTGTAATCCCAGCTACTTGGGAGGCT
Transcript ID List ENST00000419902.2; rmsk_658284
External Link RMBase: RNA-editing_site_79913
mod ID: A2ISITE009987 Click to Show/Hide the Full List
mod site chr2:121663412-121663413:+ [2]
Sequence GTGGAGGTTGCAGTGAGCCAAGATCACGCCACTGCACTTCA
Transcript ID List ENST00000419902.2; rmsk_658291
External Link RMBase: RNA-editing_site_79914
mod ID: A2ISITE009988 Click to Show/Hide the Full List
mod site chr2:121678604-121678605:+ [2]
Sequence AGCAGTGGCTCACGCCTGTAATCCCAGCTCTTTAGGAGGCC
Transcript ID List rmsk_658327; ENST00000419902.2
External Link RMBase: RNA-editing_site_79915
mod ID: A2ISITE009989 Click to Show/Hide the Full List
mod site chr2:121689191-121689192:+ [2]
Sequence GCCTGTAGTCACAGCTACTCAGGAGACTGATGCAGGAGAAT
Transcript ID List ENST00000624478.1; rmsk_658357; ENST00000419902.2
External Link RMBase: RNA-editing_site_79916
mod ID: A2ISITE009990 Click to Show/Hide the Full List
mod site chr2:121689570-121689571:+ [2]
Sequence ATGTGCTTTGCACGCTCCCTATCTGCCAGGATCAGCTTGTT
Transcript ID List ENST00000419902.2; ENST00000624478.1
External Link RMBase: RNA-editing_site_79917
N6-methyladenosine (m6A)
In total 23 m6A sequence/site(s) in this target gene
mod ID: M6ASITE047303 Click to Show/Hide the Full List
mod site chr2:121649806-121649807:+ [4]
Sequence CCTTGGAAAGTTGCGACAAAACTCGAGTTAGACAAGGAAGG
Motif Score 2.627720238
Cell/Tissue List HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000413904.6; ENST00000414554.6
External Link RMBase: m6A_site_491196
mod ID: M6ASITE047304 Click to Show/Hide the Full List
mod site chr2:121649817-121649818:+ [4]
Sequence TGCGACAAAACTCGAGTTAGACAAGGAAGGTCGGAACTAAG
Motif Score 2.897386905
Cell/Tissue List HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000414554.6; ENST00000413904.6
External Link RMBase: m6A_site_491197
mod ID: M6ASITE047305 Click to Show/Hide the Full List
mod site chr2:121649832-121649833:+ [5]
Sequence GTTAGACAAGGAAGGTCGGAACTAAGTGGCCACAGCAACAA
Motif Score 3.373380952
Cell/Tissue List HeLa; GM12878; HEK293A-TOA; MSC
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000413904.6; ENST00000414554.6
External Link RMBase: m6A_site_491198
mod ID: M6ASITE047306 Click to Show/Hide the Full List
mod site chr2:121649904-121649905:+ [5]
Sequence AGCTAAAGAGGAATCGGGAAACCCTGGGTAAAAGTCGTCCA
Motif Score 2.185083333
Cell/Tissue List HeLa; HepG2; H1A; GM12878; CD4T; HEK293A-TOA; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000413904.6; ENST00000414554.6
External Link RMBase: m6A_site_491199
mod ID: M6ASITE047307 Click to Show/Hide the Full List
mod site chr2:121650107-121650108:+ [5]
Sequence GACGCTTGTGCCGGAAGTAAACTTGTTAACGGTTCTTTGCC
Motif Score 2.627720238
Cell/Tissue List HeLa; peripheral-blood; TREX; MSC; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000447668.2; ENST00000439321.1; ENST00000419902.2; ENST00000413904.6; ENST00000414554.6
External Link RMBase: m6A_site_491200
mod ID: M6ASITE047308 Click to Show/Hide the Full List
mod site chr2:121650143-121650144:+ [5]
Sequence TTGCCTTTTGGGGAGGGGAGACAGCCCAGAGAAGGCTTTGG
Motif Score 2.897386905
Cell/Tissue List HeLa; peripheral-blood; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000439321.1; ENST00000419902.2; ENST00000414554.6; ENST00000447668.2; ENST00000413904.6
External Link RMBase: m6A_site_491201
mod ID: M6ASITE047309 Click to Show/Hide the Full List
mod site chr2:121650166-121650167:+ [5]
Sequence GCCCAGAGAAGGCTTTGGAGACCCTTGAGTCGGCCAGCGAG
Motif Score 2.876744048
Cell/Tissue List HeLa; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000414554.6; ENST00000439321.1; ENST00000413904.6; ENST00000447668.2; ENST00000419902.2
External Link RMBase: m6A_site_491202
mod ID: M6ASITE047310 Click to Show/Hide the Full List
mod site chr2:121650503-121650504:+ [6]
Sequence GTTTCCCAGCCTTGTCTCAAACTCCTGACCTCAAGTGATCC
Motif Score 2.627720238
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000413904.6; ENST00000447668.2; ENST00000419902.2; ENST00000439321.1; ENST00000414554.6
External Link RMBase: m6A_site_491203
mod ID: M6ASITE047311 Click to Show/Hide the Full List
mod site chr2:121650552-121650553:+ [7]
Sequence GGGTCTTCGAAAGTGCTGGGACAGCAGGAGTGAGCCACCGC
Motif Score 3.643047619
Cell/Tissue List peripheral-blood; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000447668.2; ENST00000439321.1; ENST00000419902.2; ENST00000413904.6; ENST00000414554.6
External Link RMBase: m6A_site_491204
mod ID: M6ASITE047312 Click to Show/Hide the Full List
mod site chr2:121650644-121650645:+ [5]
Sequence GCCTTCAAGGATCCCGAAGGACCCACAGATTTGCCGCATCA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; U2OS; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000413904.6; ENST00000414554.6; ENST00000439321.1; ENST00000419902.2; ENST00000447668.2
External Link RMBase: m6A_site_491205
mod ID: M6ASITE047313 Click to Show/Hide the Full List
mod site chr2:121650793-121650794:+ [5]
Sequence TGGGAGAGAAGTGCGGGAGAACTATGAGATAATGCCCCCTG
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; A549; U2OS; hNPCs; hESCs; fibroblasts; GM12878; Huh7; HEK293A-TOA; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000414554.6; ENST00000413904.6; ENST00000447668.2; ENST00000419902.2; ENST00000439321.1
External Link RMBase: m6A_site_491206
mod ID: M6ASITE047314 Click to Show/Hide the Full List
mod site chr2:121650933-121650934:+ [8]
Sequence GATTTGAAAGAGTAGGGATGACATGGAGGATGCGACTCCTG
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000419902.2; ENST00000413904.6; ENST00000447668.2; ENST00000439321.1; ENST00000414554.6
External Link RMBase: m6A_site_491207
mod ID: M6ASITE047315 Click to Show/Hide the Full List
mod site chr2:121650967-121650968:+ [5]
Sequence ACTCCTGGTTGGATCTATAAACTAATGTCTTTGGAACGAAA
Motif Score 2.627720238
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; MM6; Huh7; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000439321.1; ENST00000419902.2; ENST00000447668.2; ENST00000414554.6; ENST00000413904.6
External Link RMBase: m6A_site_491208
mod ID: M6ASITE047316 Click to Show/Hide the Full List
mod site chr2:121650990-121650991:+ [8]
Sequence AATGTCTTTGGAACGAAAGCACATGCAACCTTTTGAAAATG
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000447668.2; ENST00000439321.1; ENST00000419902.2; ENST00000413904.6; ENST00000414554.6
External Link RMBase: m6A_site_491209
mod ID: M6ASITE047317 Click to Show/Hide the Full List
mod site chr2:121651029-121651030:+ [5]
Sequence TGGATGGGTGATAATGAAAGACCATTCCAGAGAAGAAACAC
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; CD8T; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000414554.6; ENST00000419902.2; ENST00000439321.1; ENST00000447668.2; ENST00000413904.6
External Link RMBase: m6A_site_491210
mod ID: M6ASITE047318 Click to Show/Hide the Full List
mod site chr2:121651046-121651047:+ [5]
Sequence AAGACCATTCCAGAGAAGAAACACCATGGTGCAAAGGCTCA
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000413904.6; ENST00000439321.1; ENST00000414554.6; ENST00000447668.2; ENST00000419902.2
External Link RMBase: m6A_site_491211
mod ID: M6ASITE047319 Click to Show/Hide the Full List
mod site chr2:121651125-121651126:+ [5]
Sequence CTGAAATGGGAAAAAAAGAAACAAAGAGTAAAAAGTAAGAT
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; MM6; Huh7; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000447668.2; ENST00000439321.1; ENST00000419902.2; ENST00000413904.6; ENST00000414554.6
External Link RMBase: m6A_site_491212
mod ID: M6ASITE047320 Click to Show/Hide the Full List
mod site chr2:121651293-121651294:+ [9]
Sequence AATTCTTTTCATCTTGCAAAACAAACCCCGAACCCATTAAA
Motif Score 2.20572619
Cell/Tissue List HEK293T; hNPCs; GM12878; Huh7
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000447668.2; ENST00000439321.1; ENST00000413904.6; ENST00000414554.6; ENST00000419902.2
External Link RMBase: m6A_site_491213
mod ID: M6ASITE047321 Click to Show/Hide the Full List
mod site chr2:121651304-121651305:+ [9]
Sequence TCTTGCAAAACAAACCCCGAACCCATTAAACAATTTCTCAT
Motif Score 2.930744048
Cell/Tissue List HEK293T; hNPCs; GM12878; Huh7
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000414554.6; ENST00000419902.2; ENST00000447668.2; ENST00000413904.6; ENST00000439321.1
External Link RMBase: m6A_site_491214
mod ID: M6ASITE047322 Click to Show/Hide the Full List
mod site chr2:121651313-121651314:+ [9]
Sequence ACAAACCCCGAACCCATTAAACAATTTCTCATTCGCCATTT
Motif Score 2.20572619
Cell/Tissue List HEK293T; hNPCs; GM12878; Huh7
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000439321.1; ENST00000447668.2; ENST00000419902.2; ENST00000414554.6; ENST00000413904.6
External Link RMBase: m6A_site_491215
mod ID: M6ASITE047323 Click to Show/Hide the Full List
mod site chr2:121651511-121651512:+ [10]
Sequence GAATTTCCTTCCCTTTTAAGACTAAATAATATTCCATTGTG
Motif Score 3.319380952
Cell/Tissue List Huh7; AML
Seq Type List MeRIP-seq; miCLIP
Transcript ID List ENST00000413904.6; ENST00000414554.6; ENST00000447668.2; ENST00000419902.2; ENST00000439321.1
External Link RMBase: m6A_site_491216
mod ID: M6ASITE047324 Click to Show/Hide the Full List
mod site chr2:121705850-121705851:+ [9]
Sequence CCAGCTCTTCCCCTTTCAAAACCAGAAAAGCCGCATGTTTA
Motif Score 2.185083333
Cell/Tissue List hNPCs
Seq Type List m6A-seq
Transcript ID List ENST00000419902.2
External Link RMBase: m6A_site_491217
mod ID: M6ASITE047325 Click to Show/Hide the Full List
mod site chr2:121727820-121727821:+ [5]
Sequence AGGATATGGGCTGTTTGAAAACTATTTCATCATCTTTATCA
Motif Score 2.627720238
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000419902.2
External Link RMBase: m6A_site_491240