m6A-centered Disease Response Information
General Information of the Disease (ID: M6ADIS0168)
| Name |
Intervertebral disc degeneration
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|---|---|---|---|---|---|
| ICD |
ICD-11: FA80
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Full List of Target Gene(s) of This m6A-centered Disease Response
DNA (cytosine-5)-methyltransferase 3B (DNMT3B)
| In total 1 item(s) under this target gene | ||||
| Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [1] | |||
| Response Summary | Theses findings reveal an epigenetic interplay mechanism in NPC senescence and IVD degeneration, presenting a critical pro-senescence role of ALKBH5 and m6A hypomethylation, highlighting the therapeutic potential of targeting the m6A/DNA (cytosine-5)-methyltransferase 3B (DNMT3B)/E4F1 axis for treating IVD degeneration. | |||
| Responsed Disease | Intervertebral disc degeneration [ICD-11: FA80] | |||
| Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
| Target Regulation | Down regulation | |||
| In-vitro Model | Nucleus pulposus cell (The NP tissues were cut into pieces after collection during surgery) | |||
Transcription factor E4F1 (E4F1)
| In total 1 item(s) under this target gene | ||||
| Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [1] | |||
| Response Summary | Theses findings reveal an epigenetic interplay mechanism in NPC senescence and IVD degeneration, presenting a critical pro-senescence role of ALKBH5 and m6A hypomethylation, highlighting the therapeutic potential of targeting the m6A/DNMT3B/Transcription factor E4F1 (E4F1) axis for treating IVD degeneration. | |||
| Responsed Disease | Intervertebral disc degeneration [ICD-11: FA80] | |||
| Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
| Target Regulation | Up regulation | |||
| In-vitro Model | Nucleus pulposus cell (The NP tissues were cut into pieces after collection during surgery) | |||
Long intergenic non-protein coding RNA 657 (NORAD)
| In total 1 item(s) under this target gene | ||||
| Experiment 1 Reporting the m6A-centered Disease Response by This Target Gene | [5] | |||
| Response Summary | Subsequent loss- and gain-of-function experiments reveal WTAP is increased in senescent nucleus pulposus cells, and significantly promotes Long intergenic non-protein coding RNA 657 (NORAD) m6A modification. This study shows interruption of NORAD m6A modification or the NORAD/PUMILIO/E2F3 axis could serve as a potential therapeutic target to inhibit the senescence of NPCs and development of intervertebral disc degeneration(IVDD). | |||
| Responsed Disease | Intervertebral disc degeneration [ICD-11: FA80] | |||
| Target Regulator | Wilms tumor 1-associating protein (WTAP) | WRITER | ||
| Pathway Response | Cellular senescence | hsa04218 | ||
| Cell Process | Cell senescence | |||
| In-vitro Model | Nucleus pulposus cells (NPCs) (Nucleus pulposus cells) | |||
| In-vivo Model | After 50g male NORAD-KO or C57 mice at age of 8 weeks were anesthetized with 3% (w/v) pentobarbital (2 ml/kg) and grouped randomly, investigators blinded to the group allocation performed the experiment. The disc levels in rat tail (Co6/7, 7/8, and 8/9) were located by palpation on the coccygeal vertebrae and confirmed by trial radiography. Needles (33-G) were used to puncture the annulus fibrosus layer though the tail skin, in parallel to the end plates. To ensure that the needle did not penetrate too deeply , the length of the needle was pre-determined according to the dimensions of annulus fibrosus and the NP , which were measured in a preliminary experiment and found to be approximately 4 mm. Five kinds of solution were prepared for intradisc injection, including AA V vector, AAV containing shPUM1, AAV containing shPUM2 for Norad KO mice, AAV vector, AAV containing shE2F3, AAVcontaining OE-E2F3 for WT mice. | |||
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Disease
| In total 16 item(s) under this disease | ||
| Crosstalk ID: M6ACROT02025 | ||
| m6A Regulator | RNA demethylase ALKBH5 (ALKBH5) | |
| m6A Target | DNA (cytosine-5)-methyltransferase 3B (DNMT3B) | |
| Epigenetic Regulator | DNA (cytosine-5)-methyltransferase 3B (DNMT3B) | |
| Regulated Target | Transcription factor E4F1 (E4F1) | |
| Crosstalk relationship | m6A → DNA modification | |
| Crosstalk ID: M6ACROT02026 | ||
| m6A Regulator | YTH domain-containing family protein 2 (YTHDF2) | |
| m6A Target | DNA (cytosine-5)-methyltransferase 3B (DNMT3B) | |
| Epigenetic Regulator | DNA (cytosine-5)-methyltransferase 3B (DNMT3B) | |
| Regulated Target | Transcription factor E4F1 (E4F1) | |
| Crosstalk relationship | m6A → DNA modification | |
| Crosstalk ID: M6ACROT03005 | ||
| m6A Regulator | RNA demethylase ALKBH5 (ALKBH5) | |
| m6A Target | DNA (cytosine-5)-methyltransferase 3B (DNMT3B) | |
| Epigenetic Regulator | Lysine-specific demethylase 4A (KDM4A) | |
| Regulated Target | Histone H3 lysine 9 trimethylation (H3K9me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Crosstalk ID: M6ACROT03006 | ||
| m6A Regulator | YTH domain-containing family protein 2 (YTHDF2) | |
| m6A Target | DNA (cytosine-5)-methyltransferase 3B (DNMT3B) | |
| Epigenetic Regulator | Lysine-specific demethylase 4A (KDM4A) | |
| Regulated Target | Histone H3 lysine 9 trimethylation (H3K9me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Crosstalk ID: M6ACROT03160 | ||
| m6A Regulator | Methyltransferase-like 3 (METTL3) | |
| m6A Target | Cysteine protease ATG4A (ATG4A) | |
| Epigenetic Regulator | Histone-lysine N-methyltransferase 2A (KMT2A) | |
| Regulated Target | Histone H3 lysine 4 trimethylation (H3K4me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Crosstalk ID: M6ACROT03161 | ||
| m6A Regulator | YTH domain-containing family protein 2 (YTHDF2) | |
| m6A Target | Cysteine protease ATG4A (ATG4A) | |
| Epigenetic Regulator | Histone-lysine N-methyltransferase 2A (KMT2A) | |
| Regulated Target | Histone H3 lysine 4 trimethylation (H3K4me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Crosstalk ID: M6ACROT03238 | ||
| m6A Regulator | YTH domain-containing family protein 2 (YTHDF2) | |
| m6A Target | Forkhead box protein O3 (FOXO3) | |
| Epigenetic Regulator | CREB-binding protein (CREBBP) | |
| Crosstalk relationship | m6A → Histone modification | |
| Crosstalk ID: M6ACROT03503 | ||
| m6A Regulator | Methyltransferase-like 3 (METTL3) | |
| m6A Target | Toll-like receptor 2 (TLR2) | |
| Epigenetic Regulator | Histone-lysine N-methyltransferase 2A (KMT2A) | |
| Regulated Target | Histone H3 lysine 4 trimethylation (H3K4me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Crosstalk ID: M6ACROT05329 | ||
| m6A Regulator | Methyltransferase-like 14 (METTL14) | |
| m6A Target | NACHT, LRR and PYD domains-containing protein 3 (NLRP3) | |
| Epigenetic Regulator | hsa-miR-26a-5p | |
| Regulated Target | Methyltransferase-like protein 14 (METTL14) | |
| Crosstalk relationship | ncRNA → m6A | |
| Crosstalk ID: M6ACROT05330 | ||
| m6A Regulator | Insulin-like growth factor-binding protein 2 (IGFBP2) | |
| m6A Target | NACHT, LRR and PYD domains-containing protein 3 (NLRP3) | |
| Epigenetic Regulator | hsa-miR-26a-5p | |
| Regulated Target | Methyltransferase-like protein 14 (METTL14) | |
| Crosstalk relationship | ncRNA → m6A | |
| Crosstalk ID: M6ACROT05557 | ||
| m6A Regulator | Wilms tumor 1-associating protein (WTAP) | |
| m6A Target | Long intergenic non-protein coding RNA 657 (NORAD) | |
| Epigenetic Regulator | Long intergenic non-protein coding RNA 657 (NORAD) | |
| Regulated Target | Pumilio homolog 1 (PUM1) | |
| Crosstalk relationship | m6A → ncRNA | |
| Crosstalk ID: M6ACROT05970 | ||
| m6A Regulator | YTH domain-containing family protein 2 (YTHDF2) | |
| m6A Target | Long intergenic non-protein coding RNA 657 (NORAD) | |
| Epigenetic Regulator | Long intergenic non-protein coding RNA 657 (NORAD) | |
| Regulated Target | Pumilio homolog 1 (PUM1) | |
| Crosstalk relationship | m6A → ncRNA | |
| Crosstalk ID: M6ACROT05971 | ||
| m6A Regulator | Wilms tumor 1-associating protein (WTAP) | |
| m6A Target | Long intergenic non-protein coding RNA 657 (NORAD) | |
| Epigenetic Regulator | Long intergenic non-protein coding RNA 657 (NORAD) | |
| Regulated Target | Pumilio homolog 2 (PUM2) | |
| Crosstalk relationship | m6A → ncRNA | |
| Crosstalk ID: M6ACROT05972 | ||
| m6A Regulator | YTH domain-containing family protein 2 (YTHDF2) | |
| m6A Target | Long intergenic non-protein coding RNA 657 (NORAD) | |
| Epigenetic Regulator | Long intergenic non-protein coding RNA 657 (NORAD) | |
| Regulated Target | Pumilio homolog 2 (PUM2) | |
| Crosstalk relationship | m6A → ncRNA | |
| Crosstalk ID: M6ACROT05973 | ||
| m6A Regulator | Wilms tumor 1-associating protein (WTAP) | |
| m6A Target | Long intergenic non-protein coding RNA 657 (NORAD) | |
| Epigenetic Regulator | Lysine-specific demethylase 5A (KDM5A) | |
| Regulated Target | Histone H3 lysine 4 trimethylation (H3K4me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Crosstalk ID: M6ACROT05974 | ||
| m6A Regulator | YTH domain-containing family protein 2 (YTHDF2) | |
| m6A Target | Long intergenic non-protein coding RNA 657 (NORAD) | |
| Epigenetic Regulator | Lysine-specific demethylase 5A (KDM5A) | |
| Regulated Target | Histone H3 lysine 4 trimethylation (H3K4me3) | |
| Crosstalk relationship | Histone modification → m6A | |
References