General Information of the m6A Target Gene (ID: M6ATAR00214)
Target Name Cyclin-dependent kinase inhibitor 1B (CDKN1B/p27)
Synonyms
Cyclin-dependent kinase inhibitor p27; p27Kip1; KIP1
    Click to Show/Hide
Gene Name CDKN1B
Chromosomal Location 12p13.1
Family CDI family
Function
Important regulator of cell cycle progression. Inhibits the kinase activity of CDK2 bound to cyclin A, but has little inhibitory activity on CDK2 bound to SPDYA. Involved in G1 arrest. Potent inhibitor of cyclin E- and cyclin A-CDK2 complexes. Forms a complex with cyclin type D-CDK4 complexes and is involved in the assembly, stability, and modulation of CCND1-CDK4 complex activation. Acts either as an inhibitor or an activator of cyclin type D-CDK4 complexes depending on its phosphorylation state and/or stoichometry.
    Click to Show/Hide
Gene ID 1027
Uniprot ID
CDN1B_HUMAN
HGNC ID
HGNC:1785
KEGG ID
hsa:1027
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
CDKN1B can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
Browse Drug
YTH domain-containing family protein 1 (YTHDF1) [READER]
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [3]
Response Summary YTHDF1 deficiency inhibits Non-small cell lung cancer cell proliferation and xenograft tumor formation through regulating the translational efficiency of CDK2, CDK4, Cyclin-dependent kinase inhibitor 1B (CDKN1B/p27), and cyclin D1, and that YTHDF1 depletion restrains de novo lung adenocarcinomas (ADC) progression. Mechanistic studies identified the Keap1-Nrf2-AKR1C1 axis as the downstream mediator of YTHDF1. YTHDF1 high expression correlates with better clinical outcome, with its depletion rendering cancerous cells resistant to cisplatin (DDP) treatment.
Target Regulation Down regulation
Responsed Disease Non-small-cell lung carcinoma ICD-11: 2C25.Y
Responsed Drug Cisplatin Approved
Pathway Response Chemical carcinogenesis - reactive oxygen species hsa05208
Cell cycle hsa04110
Cell Process Biological regulation
In-vitro Model A-549 Lung adenocarcinoma Homo sapiens CVCL_0023
A549-DDP (Human lung adenocarcinoma is resistant to cisplatin)
GLC-82 Endocervical adenocarcinoma Homo sapiens CVCL_3371
NCI-H1299 Lung large cell carcinoma Homo sapiens CVCL_0060
NCI-H1975 Lung adenocarcinoma Homo sapiens CVCL_1511
HEK293T Normal Homo sapiens CVCL_0063
NCI-H1650 Minimally invasive lung adenocarcinoma Homo sapiens CVCL_1483
NCI-H838 Lung adenocarcinoma Homo sapiens CVCL_1594
SPC-A1 Endocervical adenocarcinoma Homo sapiens CVCL_6955
In-vivo Model Mice were treated via nasal inhalation of adenovirus carrying Cre recombinase (5 × 106 p.f.u for Ad-Cre, Biowit Inc., Shenzhen, Guangdong), and were then killed at indicated times for gross inspection and histopathological examination.
YTH domain-containing family protein 2 (YTHDF2) [READER]
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [4]
Response Summary The role of YTHDF2 in tumourigenesis and cisplatin-desensitising function by promoting the degradation of Cyclin-dependent kinase inhibitor 1B (CDKN1B/p27) mRNA in an m6 A-dependent manner. YTHDF2 exhibits tumour oncogenic and cisplatin-desensitising properties, which offer insight into the development of novel combination therapeutic strategies for intrahepatic cholangiocarcinoma.
Target Regulation Down regulation
Responsed Disease Intrahepatic cholangiocarcinoma ICD-11: 2C12.10
Responsed Drug Cisplatin Approved
Pathway Response Cell cycle hsa04110
Cell Process Cell proliferation
Arrest cell cycle at G0/G1 phase
In-vitro Model HuCC-T1 Intrahepatic cholangiocarcinoma Homo sapiens CVCL_0324
RBE Intrahepatic cholangiocarcinoma Homo sapiens CVCL_4896
HCCC-9810 (The intrahepatic cholangiocarcinoma cell lines (HCCC-9810) were purchased from Cellcook Co., Ltd. (Guangzhou, China).)
HIBEC (The normal intrahepatic bile duct cell line (HIBEC) were purchased from Cellcook Co., Ltd. (Guangzhou, China).)
In-vivo Model For tumour xenograft models, 1 × 107 HuCC-T1 cells in knockdown group or control group were implanted into the right flank of 5-week-old female nude mice. The volumes of tumour were recorded every 4 days by calliper. The volumes were calculated as length × width2/2. For patient-derived xenograft (PDX) model (PDX0075), ICC tissues from a patient, who relapsed in 6 months after R0 resection and subsequent chemotherapy with cisplatin and gemcitabine, were diced into 3 mm3 pieces and transplanted subcutaneously into the right flank of 5-week-old female B-NDG mice.
Liver cancer [ICD-11: 2C12]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [4]
Response Summary The role of YTHDF2 in tumourigenesis and cisplatin-desensitising function by promoting the degradation of Cyclin-dependent kinase inhibitor 1B (CDKN1B/p27) mRNA in an m6 A-dependent manner. YTHDF2 exhibits tumour oncogenic and cisplatin-desensitising properties, which offer insight into the development of novel combination therapeutic strategies for intrahepatic cholangiocarcinoma.
Responsed Disease Intrahepatic cholangiocarcinoma [ICD-11: 2C12.10]
Target Regulator YTH domain-containing family protein 2 (YTHDF2) READER
Target Regulation Down regulation
Responsed Drug Cisplatin Approved
Pathway Response Cell cycle hsa04110
Cell Process Cell proliferation
Arrest cell cycle at G0/G1 phase
In-vitro Model HuCC-T1 Intrahepatic cholangiocarcinoma Homo sapiens CVCL_0324
RBE Intrahepatic cholangiocarcinoma Homo sapiens CVCL_4896
HCCC-9810 (The intrahepatic cholangiocarcinoma cell lines (HCCC-9810) were purchased from Cellcook Co., Ltd. (Guangzhou, China).)
HIBEC (The normal intrahepatic bile duct cell line (HIBEC) were purchased from Cellcook Co., Ltd. (Guangzhou, China).)
In-vivo Model For tumour xenograft models, 1 × 107 HuCC-T1 cells in knockdown group or control group were implanted into the right flank of 5-week-old female nude mice. The volumes of tumour were recorded every 4 days by calliper. The volumes were calculated as length × width2/2. For patient-derived xenograft (PDX) model (PDX0075), ICC tissues from a patient, who relapsed in 6 months after R0 resection and subsequent chemotherapy with cisplatin and gemcitabine, were diced into 3 mm3 pieces and transplanted subcutaneously into the right flank of 5-week-old female B-NDG mice.
Lung cancer [ICD-11: 2C25]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [3]
Response Summary YTHDF1 deficiency inhibits Non-small cell lung cancer cell proliferation and xenograft tumor formation through regulating the translational efficiency of CDK2, CDK4, Cyclin-dependent kinase inhibitor 1B (CDKN1B/p27), and cyclin D1, and that YTHDF1 depletion restrains de novo lung adenocarcinomas (ADC) progression. Mechanistic studies identified the Keap1-Nrf2-AKR1C1 axis as the downstream mediator of YTHDF1. YTHDF1 high expression correlates with better clinical outcome, with its depletion rendering cancerous cells resistant to cisplatin (DDP) treatment.
Responsed Disease Non-small-cell lung carcinoma [ICD-11: 2C25.Y]
Target Regulator YTH domain-containing family protein 1 (YTHDF1) READER
Target Regulation Down regulation
Responsed Drug Cisplatin Approved
Pathway Response Chemical carcinogenesis - reactive oxygen species hsa05208
Cell cycle hsa04110
Cell Process Biological regulation
In-vitro Model A-549 Lung adenocarcinoma Homo sapiens CVCL_0023
A549-DDP (Human lung adenocarcinoma is resistant to cisplatin)
GLC-82 Endocervical adenocarcinoma Homo sapiens CVCL_3371
NCI-H1299 Lung large cell carcinoma Homo sapiens CVCL_0060
NCI-H1975 Lung adenocarcinoma Homo sapiens CVCL_1511
HEK293T Normal Homo sapiens CVCL_0063
NCI-H1650 Minimally invasive lung adenocarcinoma Homo sapiens CVCL_1483
NCI-H838 Lung adenocarcinoma Homo sapiens CVCL_1594
SPC-A1 Endocervical adenocarcinoma Homo sapiens CVCL_6955
In-vivo Model Mice were treated via nasal inhalation of adenovirus carrying Cre recombinase (5 × 106 p.f.u for Ad-Cre, Biowit Inc., Shenzhen, Guangdong), and were then killed at indicated times for gross inspection and histopathological examination.
Cisplatin [Approved]
In total 2 item(s) under this drug
Experiment 1 Reporting the m6A-centered Drug Response [3]
Response Summary YTHDF1 deficiency inhibits Non-small cell lung cancer cell proliferation and xenograft tumor formation through regulating the translational efficiency of CDK2, CDK4, Cyclin-dependent kinase inhibitor 1B (CDKN1B/p27), and cyclin D1, and that YTHDF1 depletion restrains de novo lung adenocarcinomas (ADC) progression. Mechanistic studies identified the Keap1-Nrf2-AKR1C1 axis as the downstream mediator of YTHDF1. YTHDF1 high expression correlates with better clinical outcome, with its depletion rendering cancerous cells resistant to cisplatin (DDP) treatment.
Target Regulator YTH domain-containing family protein 1 (YTHDF1) READER
Target Regulation Down regulation
Responsed Disease Non-small-cell lung carcinoma ICD-11: 2C25.Y
Pathway Response Chemical carcinogenesis - reactive oxygen species hsa05208
Cell cycle hsa04110
Cell Process Biological regulation
In-vitro Model A-549 Lung adenocarcinoma Homo sapiens CVCL_0023
A549-DDP (Human lung adenocarcinoma is resistant to cisplatin)
GLC-82 Endocervical adenocarcinoma Homo sapiens CVCL_3371
NCI-H1299 Lung large cell carcinoma Homo sapiens CVCL_0060
NCI-H1975 Lung adenocarcinoma Homo sapiens CVCL_1511
HEK293T Normal Homo sapiens CVCL_0063
NCI-H1650 Minimally invasive lung adenocarcinoma Homo sapiens CVCL_1483
NCI-H838 Lung adenocarcinoma Homo sapiens CVCL_1594
SPC-A1 Endocervical adenocarcinoma Homo sapiens CVCL_6955
In-vivo Model Mice were treated via nasal inhalation of adenovirus carrying Cre recombinase (5 × 106 p.f.u for Ad-Cre, Biowit Inc., Shenzhen, Guangdong), and were then killed at indicated times for gross inspection and histopathological examination.
Experiment 2 Reporting the m6A-centered Drug Response [4]
Response Summary The role of YTHDF2 in tumourigenesis and cisplatin-desensitising function by promoting the degradation of Cyclin-dependent kinase inhibitor 1B (CDKN1B/p27) mRNA in an m6 A-dependent manner. YTHDF2 exhibits tumour oncogenic and cisplatin-desensitising properties, which offer insight into the development of novel combination therapeutic strategies for intrahepatic cholangiocarcinoma.
Target Regulator YTH domain-containing family protein 2 (YTHDF2) READER
Target Regulation Down regulation
Responsed Disease Intrahepatic cholangiocarcinoma ICD-11: 2C12.10
Pathway Response Cell cycle hsa04110
Cell Process Cell proliferation
Arrest cell cycle at G0/G1 phase
In-vitro Model HuCC-T1 Intrahepatic cholangiocarcinoma Homo sapiens CVCL_0324
RBE Intrahepatic cholangiocarcinoma Homo sapiens CVCL_4896
HCCC-9810 (The intrahepatic cholangiocarcinoma cell lines (HCCC-9810) were purchased from Cellcook Co., Ltd. (Guangzhou, China).)
HIBEC (The normal intrahepatic bile duct cell line (HIBEC) were purchased from Cellcook Co., Ltd. (Guangzhou, China).)
In-vivo Model For tumour xenograft models, 1 × 107 HuCC-T1 cells in knockdown group or control group were implanted into the right flank of 5-week-old female nude mice. The volumes of tumour were recorded every 4 days by calliper. The volumes were calculated as length × width2/2. For patient-derived xenograft (PDX) model (PDX0075), ICC tissues from a patient, who relapsed in 6 months after R0 resection and subsequent chemotherapy with cisplatin and gemcitabine, were diced into 3 mm3 pieces and transplanted subcutaneously into the right flank of 5-week-old female B-NDG mice.
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
RNA modification
m6A Regulator: Heterogeneous nuclear ribonucleoproteins A2/B1 (HNRNPA2B1)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00493
Epigenetic Regulator Double-stranded RNA-specific editase 1 (ADARB1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
Crosstalk ID: M6ACROT00494
Epigenetic Regulator Interferon-inducible protein 4 (ADAR1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
m6A Regulator: Insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00495
Epigenetic Regulator Double-stranded RNA-specific editase 1 (ADARB1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
Crosstalk ID: M6ACROT00496
Epigenetic Regulator Interferon-inducible protein 4 (ADAR1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
m6A Regulator: Methyltransferase-like 14 (METTL14)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00497
Epigenetic Regulator Double-stranded RNA-specific editase 1 (ADARB1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
Crosstalk ID: M6ACROT00498
Epigenetic Regulator Interferon-inducible protein 4 (ADAR1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00499
Epigenetic Regulator Double-stranded RNA-specific editase 1 (ADARB1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
Crosstalk ID: M6ACROT00500
Epigenetic Regulator Interferon-inducible protein 4 (ADAR1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
m6A Regulator: Wilms tumor 1-associating protein (WTAP)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00501
Epigenetic Regulator Double-stranded RNA-specific editase 1 (ADARB1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
Crosstalk ID: M6ACROT00502
Epigenetic Regulator Interferon-inducible protein 4 (ADAR1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
m6A Regulator: ELAV-like protein 1 (ELAVL1)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00503
Epigenetic Regulator Double-stranded RNA-specific editase 1 (ADARB1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
Crosstalk ID: M6ACROT00504
Epigenetic Regulator Interferon-inducible protein 4 (ADAR1)
Regulated Target MicroRNA 222 (MIR222)
Crosstalk relationship A-to-I → m6A
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00214)
Cyclin-dependent kinase inhibitor 1B (CDKN1B/p27)
Adenosine-to-Inosine editing (A-to-I)
In total 1 m6A sequence/site(s) in this target gene
mod ID: A2ISITE005422 Click to Show/Hide the Full List
mod site chr12:12715355-12715356:+ [5]
Sequence GAAAAACTAAAGAGGATGAGACCTCTTGCTTGATCCTAGGT
Transcript ID List ENST00000477087.1
External Link RMBase: RNA-editing_site_26991
N6-methyladenosine (m6A)
In total 49 m6A sequence/site(s) in this target gene
mod ID: M6ASITE010820 Click to Show/Hide the Full List
mod site chr12:12717523-12717524:+ [6]
Sequence AGAGCGGCTGGGTTCGCGGGACCCGCGGGCTTGCACCCGCC
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; GM12878; MM6; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; TIME; TREX; MSC; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228872.9; ENST00000477087.1
External Link RMBase: m6A_site_177624
mod ID: M6ASITE010821 Click to Show/Hide the Full List
mod site chr12:12717547-12717548:+ [6]
Sequence GCGGGCTTGCACCCGCCCAGACTCGGACGGGCTTTGCCACC
Motif Score 3.319380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; GM12878; MM6; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; TIME; TREX; MSC; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228872.9; ENST00000477087.1
External Link RMBase: m6A_site_177625
mod ID: M6ASITE010822 Click to Show/Hide the Full List
mod site chr12:12717634-12717635:+ [6]
Sequence AGTCCATTTGATCAGCGGAGACTCGGCGGCCGGGCCGGGGC
Motif Score 3.319380952
Cell/Tissue List HeLa; CD34; HepG2; GM12878; MM6; peripheral-blood; GSC-11; HEK293T; iSLK; TREX; MSC; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228872.9; ENST00000477087.1
External Link RMBase: m6A_site_177626
mod ID: M6ASITE010823 Click to Show/Hide the Full List
mod site chr12:12717826-12717827:+ [6]
Sequence CGAGAGAGGCGGTCGTGCAGACCCGGGAGAAAGATGTCAAA
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; U2OS; A549; MM6; Huh7; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228872.9; ENST00000396340.1; ENST00000477087.1
External Link RMBase: m6A_site_177627
mod ID: M6ASITE010824 Click to Show/Hide the Full List
mod site chr12:12717930-12717931:+ [6]
Sequence CAAGCCCTCGGCCTGCAGGAACCTCTTCGGCCCGGTGGACC
Motif Score 2.930744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000396340.1; ENST00000477087.1; ENST00000228872.9; ENST00000442489.1
External Link RMBase: m6A_site_177628
mod ID: M6ASITE010825 Click to Show/Hide the Full List
mod site chr12:12717948-12717949:+ [6]
Sequence GAACCTCTTCGGCCCGGTGGACCACGAAGAGTTAACCCGGG
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000396340.1; ENST00000228872.9; ENST00000442489.1; ENST00000477087.1
External Link RMBase: m6A_site_177629
mod ID: M6ASITE010826 Click to Show/Hide the Full List
mod site chr12:12717969-12717970:+ [6]
Sequence CCACGAAGAGTTAACCCGGGACTTGGAGAAGCACTGCAGAG
Motif Score 4.065041667
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000396340.1; ENST00000477087.1; ENST00000442489.1; ENST00000228872.9
External Link RMBase: m6A_site_177630
mod ID: M6ASITE010827 Click to Show/Hide the Full List
mod site chr12:12717990-12717991:+ [6]
Sequence CTTGGAGAAGCACTGCAGAGACATGGAAGAGGCGAGCCAGC
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4; AML
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; miCLIP
Transcript ID List ENST00000442489.1; ENST00000228872.9; ENST00000477087.1; ENST00000396340.1
External Link RMBase: m6A_site_177631
mod ID: M6ASITE010828 Click to Show/Hide the Full List
mod site chr12:12718038-12718039:+ [7]
Sequence GAATTTCGATTTTCAGAATCACAAACCCCTAGAGGGCAAGT
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000228872.9; ENST00000396340.1; ENST00000442489.1; ENST00000477087.1
External Link RMBase: m6A_site_177632
mod ID: M6ASITE010829 Click to Show/Hide the Full List
mod site chr12:12718042-12718043:+ [6]
Sequence TTCGATTTTCAGAATCACAAACCCCTAGAGGGCAAGTACGA
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000442489.1; ENST00000396340.1; ENST00000228872.9; ENST00000477087.1
External Link RMBase: m6A_site_177633
mod ID: M6ASITE010830 Click to Show/Hide the Full List
mod site chr12:12718108-12718109:+ [6]
Sequence TTGCCCGAGTTCTACTACAGACCCCCGCGGCCCCCCAAAGG
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228872.9; ENST00000477087.1; ENST00000442489.1; ENST00000396340.1
External Link RMBase: m6A_site_177634
mod ID: M6ASITE010831 Click to Show/Hide the Full List
mod site chr12:12718218-12718219:+ [6]
Sequence GGCTCCGGCTAACTCTGAGGACACGCATTTGGTGGACCCAA
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000477087.1; ENST00000442489.1; ENST00000228872.9; ENST00000396340.1
External Link RMBase: m6A_site_177635
mod ID: M6ASITE010832 Click to Show/Hide the Full List
mod site chr12:12718233-12718234:+ [6]
Sequence TGAGGACACGCATTTGGTGGACCCAAAGACTGATCCGTCGG
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228872.9; ENST00000396340.1; ENST00000442489.1; ENST00000477087.1
External Link RMBase: m6A_site_177636
mod ID: M6ASITE010833 Click to Show/Hide the Full List
mod site chr12:12718241-12718242:+ [6]
Sequence CGCATTTGGTGGACCCAAAGACTGATCCGTCGGACAGCCAG
Motif Score 3.319380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000396340.1; ENST00000228872.9; ENST00000442489.1; ENST00000477087.1
External Link RMBase: m6A_site_177637
mod ID: M6ASITE010834 Click to Show/Hide the Full List
mod site chr12:12718254-12718255:+ [6]
Sequence CCCAAAGACTGATCCGTCGGACAGCCAGACGGGGTTAGCGG
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228872.9; ENST00000477087.1; ENST00000442489.1; ENST00000396340.1
External Link RMBase: m6A_site_177638
mod ID: M6ASITE010835 Click to Show/Hide the Full List
mod site chr12:12718839-12718840:+ [6]
Sequence CTTAGATTCTTCTACTCAAAACAAAAGAGCCAACAGAACAG
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000477087.1; ENST00000228872.9; ENST00000442489.1; ENST00000396340.1
External Link RMBase: m6A_site_177639
mod ID: M6ASITE010836 Click to Show/Hide the Full List
mod site chr12:12718856-12718857:+ [6]
Sequence AAAACAAAAGAGCCAACAGAACAGAAGAAAATGTTTCAGAC
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1B; H1A; hNPCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228872.9; ENST00000442489.1; ENST00000477087.1; ENST00000396340.1
External Link RMBase: m6A_site_177640
mod ID: M6ASITE010837 Click to Show/Hide the Full List
mod site chr12:12718946-12718947:+ [8]
Sequence TCAGAAGACGTCAAACGTAAACAGCTCGGTGGGTTGATCAC
Motif Score 2.20572619
Cell/Tissue List CD34; HEK293T; HeLa; A549; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000442489.1; ENST00000477087.1; ENST00000396340.1; ENST00000228872.9
External Link RMBase: m6A_site_177641
mod ID: M6ASITE010838 Click to Show/Hide the Full List
mod site chr12:12721127-12721128:+ [9]
Sequence TTTAAAAATACATATCGCTGACTTCATGGAATGGACATCCT
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000442489.1; ENST00000396340.1; ENST00000228872.9; ENST00000477087.1
External Link RMBase: m6A_site_177642
mod ID: M6ASITE010839 Click to Show/Hide the Full List
mod site chr12:12721141-12721142:+ [6]
Sequence TCGCTGACTTCATGGAATGGACATCCTGTATAAGCACTGAA
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; brain; hESC-HEK293T; hNPCs; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; AML
Seq Type List m6A-seq; MeRIP-seq; m6A-REF-seq; MAZTER-seq; m6A-CLIP/IP; miCLIP
Transcript ID List ENST00000396340.1; ENST00000442489.1; ENST00000228872.9; ENST00000477087.1
External Link RMBase: m6A_site_177643
mod ID: M6ASITE010840 Click to Show/Hide the Full List
mod site chr12:12721164-12721165:+ [6]
Sequence TCCTGTATAAGCACTGAAAAACAACAACACAATAACACTAA
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; hESC-HEK293T; hNPCs; hESCs; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000442489.1; ENST00000228872.9; ENST00000396340.1; ENST00000477087.1
External Link RMBase: m6A_site_177644
mod ID: M6ASITE010841 Click to Show/Hide the Full List
mod site chr12:12721178-12721179:+ [7]
Sequence TGAAAAACAACAACACAATAACACTAAAATTTTAGGCACTC
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000396340.1; ENST00000477087.1; ENST00000442489.1; ENST00000228872.9
External Link RMBase: m6A_site_177645
mod ID: M6ASITE010842 Click to Show/Hide the Full List
mod site chr12:12721180-12721181:+ [9]
Sequence AAAAACAACAACACAATAACACTAAAATTTTAGGCACTCTT
Motif Score 2.506922619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000477087.1; ENST00000228872.9; ENST00000442489.1; ENST00000396340.1
External Link RMBase: m6A_site_177646
mod ID: M6ASITE010843 Click to Show/Hide the Full List
mod site chr12:12721271-12721272:+ [9]
Sequence TTCCTTATTTGCTTCATTGTACTACCTGTGTATATAGTTTT
Motif Score 3.278136905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000228872.9; ENST00000442489.1; ENST00000396340.1
External Link RMBase: m6A_site_177647
mod ID: M6ASITE010844 Click to Show/Hide the Full List
mod site chr12:12721274-12721275:+ [9]
Sequence CTTATTTGCTTCATTGTACTACCTGTGTATATAGTTTTTAC
Motif Score 2.05802381
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000442489.1; ENST00000228872.9; ENST00000396340.1
External Link RMBase: m6A_site_177648
mod ID: M6ASITE010845 Click to Show/Hide the Full List
mod site chr12:12721307-12721308:+ [7]
Sequence GTTTTTACCTTTTATGTAGCACATAAACTTTGGGGAAGGGA
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000396340.1; ENST00000228872.9
External Link RMBase: m6A_site_177649
mod ID: M6ASITE010846 Click to Show/Hide the Full List
mod site chr12:12721313-12721314:+ [6]
Sequence ACCTTTTATGTAGCACATAAACTTTGGGGAAGGGAGGGCAG
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; BGC823; hNPCs; hESCs; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228872.9; ENST00000396340.1
External Link RMBase: m6A_site_177650
mod ID: M6ASITE010847 Click to Show/Hide the Full List
mod site chr12:12721348-12721349:+ [6]
Sequence GGGCAGGGTGGGGCTGAGGAACTGACGTGGAGCGGGGTATG
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; BGC823; hESCs; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228872.9; ENST00000396340.1
External Link RMBase: m6A_site_177651
mod ID: M6ASITE010848 Click to Show/Hide the Full List
mod site chr12:12721483-12721484:+ [6]
Sequence ATGTAATGTCCCTTTCAGAGACAGCTGATACTTCATTTAAA
Motif Score 2.897386905
Cell/Tissue List HeLa; liver
Seq Type List m6A-seq; m6A-REF-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177652
mod ID: M6ASITE010849 Click to Show/Hide the Full List
mod site chr12:12721522-12721523:+ [6]
Sequence AAAAAATCACAAAAATTTGAACACTGGCTAAAGATAATTGC
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177653
mod ID: M6ASITE010850 Click to Show/Hide the Full List
mod site chr12:12721554-12721555:+ [7]
Sequence GATAATTGCTATTTATTTTTACAAGAAGTTTATTCTCATTT
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177654
mod ID: M6ASITE010851 Click to Show/Hide the Full List
mod site chr12:12721652-12721653:+ [6]
Sequence TTTTTAAAAAAGCAACAGAAACCTATCCTCACTGCCCTCCC
Motif Score 2.185083333
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177655
mod ID: M6ASITE010852 Click to Show/Hide the Full List
mod site chr12:12721662-12721663:+ [9]
Sequence AGCAACAGAAACCTATCCTCACTGCCCTCCCCAGTCTCTCT
Motif Score 2.469291667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177656
mod ID: M6ASITE010853 Click to Show/Hide the Full List
mod site chr12:12721813-12721814:+ [7]
Sequence TGCTTTTATTAAATTTGTTGACAAAATTTTCTCATTTTCTT
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177657
mod ID: M6ASITE010854 Click to Show/Hide the Full List
mod site chr12:12721837-12721838:+ [9]
Sequence AATTTTCTCATTTTCTTTTCACTTCGGGCTGTGTAAACACA
Motif Score 2.469291667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177658
mod ID: M6ASITE010855 Click to Show/Hide the Full List
mod site chr12:12721853-12721854:+ [7]
Sequence TTTCACTTCGGGCTGTGTAAACACAGTCAAAATAATTCTAA
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177659
mod ID: M6ASITE010856 Click to Show/Hide the Full List
mod site chr12:12721910-12721911:+ [7]
Sequence AAAGATCTGTAAGTAACTTCACATTAAAAAATGAAATATTT
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177660
mod ID: M6ASITE010857 Click to Show/Hide the Full List
mod site chr12:12721946-12721947:+ [9]
Sequence TATTTTTTAATTTAAAGCTTACTCTGTCCATTTATCCACAG
Motif Score 2.494845238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177661
mod ID: M6ASITE010858 Click to Show/Hide the Full List
mod site chr12:12722008-12722009:+ [7]
Sequence AGGTTCATGTAGAGAAAAGCACACTTGTAGGATAAGTGAAA
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177662
mod ID: M6ASITE010859 Click to Show/Hide the Full List
mod site chr12:12722047-12722048:+ [6]
Sequence AATGGATACTACATCTTTAAACAGTATTTCATTGCCTGTGT
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177663
mod ID: M6ASITE010860 Click to Show/Hide the Full List
mod site chr12:12722076-12722077:+ [6]
Sequence CATTGCCTGTGTATGGAAAAACCATTTGAAGTGTACCTGTG
Motif Score 2.185083333
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177664
mod ID: M6ASITE010861 Click to Show/Hide the Full List
mod site chr12:12722098-12722099:+ [7]
Sequence CATTTGAAGTGTACCTGTGTACATAACTCTGTAAAAACACT
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177665
mod ID: M6ASITE010862 Click to Show/Hide the Full List
mod site chr12:12722114-12722115:+ [6]
Sequence GTGTACATAACTCTGTAAAAACACTGAAAAATTATACTAAC
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177666
mod ID: M6ASITE010863 Click to Show/Hide the Full List
mod site chr12:12722116-12722117:+ [9]
Sequence GTACATAACTCTGTAAAAACACTGAAAAATTATACTAACTT
Motif Score 2.506922619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177667
mod ID: M6ASITE010864 Click to Show/Hide the Full List
mod site chr12:12722167-12722168:+ [6]
Sequence AAAGATTTTTTTTAATCTAGACAATATACAAGCCAAAGTGG
Motif Score 2.897386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177668
mod ID: M6ASITE010865 Click to Show/Hide the Full List
mod site chr12:12722174-12722175:+ [7]
Sequence TTTTTTAATCTAGACAATATACAAGCCAAAGTGGCATGTTT
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177669
mod ID: M6ASITE010866 Click to Show/Hide the Full List
mod site chr12:12722278-12722279:+ [9]
Sequence CTATGCTTAAAAGGTTGCATACTGAGCCAAGTATAATTTTT
Motif Score 2.53247619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177670
mod ID: M6ASITE010867 Click to Show/Hide the Full List
mod site chr12:12722331-12722332:+ [7]
Sequence AAAAGATGCCAATTATTGTTACACATTAAGTAATCAATAAA
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177671
mod ID: M6ASITE010868 Click to Show/Hide the Full List
mod site chr12:12722356-12722357:+ [6]
Sequence TTAAGTAATCAATAAAGAAAACTTCCATAGCTATTCATTGA
Motif Score 2.627720238
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000228872.9
External Link RMBase: m6A_site_177672
N7-methylguanosine (m7G)
In total 1 m6A sequence/site(s) in this target gene
mod ID: m7GSITE000012 Click to Show/Hide the Full List
mod site chr12:12721335-12721336:+ [10]
Sequence TTTGGGGAAGGGAGGGCAGGGTGGGGCTGAGGAACTGACGT
Cell/Tissue List A549; HeLa; HepG2
Seq Type List BoRed-seq&m7G-RIP-seq; m7G-seq
Transcript ID List ENST00000396340.1; ENST00000228872.9
External Link RMBase: m7G_site_196