m6A Target Gene Information
General Information of the m6A Target Gene (ID: M6ATAR00237)
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
EGFR
can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
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YTH domain-containing family protein 1 (YTHDF1) [READER]
Representative RNA-seq result indicating the expression of this target gene regulated by YTHDF1 | ||
Cell Line | AGS cell line | Homo sapiens |
Treatment: shYTHDF1 AGS
Control: shControl AGS
|
GSE159425 | |
Regulation |
|
logFC: -6.10E-01 p-value: 2.21E-04 |
More Results | Click to View More RNA-seq Results | |
Representative RIP-seq result supporting the interaction between EGFR and the regulator | ||
Cell Line | Hela | Homo sapiens |
Regulation | logFC: 2.78E+00 | GSE63591 |
In total 2 item(s) under this regulator | ||||
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene | [1] | |||
Response Summary | YTHDF1 regulates the translation of Epidermal growth factor receptor (EGFR) mRNA via binding m6 A sites in the 3'-UTR of EGFR transcript. YTHDF1 is upregulated in ICC and associated with shorter survival of ICC patients. | |||
Target Regulation | Up regulation | |||
Responsed Disease | Intrahepatic cholangiocarcinoma | ICD-11: 2C12.10 | ||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Cell Process | Cell proliferation | |||
Cell migration | ||||
Cell nvasion | ||||
In-vitro Model | HuCC-T1 | Intrahepatic cholangiocarcinoma | Homo sapiens | CVCL_0324 |
RBE | Intrahepatic cholangiocarcinoma | Homo sapiens | CVCL_4896 | |
In-vivo Model | For the subcutaneous implantation ICC mouse model, 6-week-old male NCG mice (Jiangsu, China) were randomly enrolled into shNC group and shYTHDF1 group (n = 9); 1 × 106 HuCCT1 cells in 0.1-mL PBS transfected with shNC or shYTHDF1 were subcutaneously inoculated in the right flanks of the mice. For AKT/YapS127A-induced orthotopic ICC mouse model, 16 mice were divided into two groups randomly. For the control group, 20-ug AKT, 30-ug Yap, and 2-ug pCMV/SB plasmids plus 20-ug vector plasmids as control were diluted in 2-mL saline and then were injected into the lateral tail vein within 7 s. For the YTHDF1-overexpressed group, mice were injected with additional 20-ug YTHDF1 plasmids under the same conditions. Mice were sacrificed at 4 weeks after injection, and liver tissues were harvested for analysis. | |||
Experiment 2 Reporting the m6A Methylation Regulator of This Target Gene | [2] | |||
Response Summary | Sublethal heat treatment increases epidermal factor growth receptor (EGFR) m6A modification in the vicinity of the 5' untranslated region and promotes its binding with YTHDF1, which enhances the translation of Epidermal growth factor receptor (EGFR) mRNA. Combination of YTHDF1 silencing and EGFR inhibition suppressed the malignancies of HCC cells synergically. | |||
Target Regulation | Up regulation | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Pathway Response | mRNA surveillance pathway | hsa03015), RNA degradation | ||
Cell Process | RNA stability | |||
In-vivo Model | The caudal vein injection mouse model, intrasplenic injection mouse model, and orthotopic xenograft IRFA HCC mouse models, including patient-derived xenograft (PDX), and cell-line-derived xenograft implantation models, were established as reported. | |||
Methyltransferase-like 14 (METTL14) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by METTL14 | ||
Cell Line | HepG2 cell line | Homo sapiens |
Treatment: shMETTL14 HepG2 cells
Control: shCtrl HepG2 cells
|
GSE121949 | |
Regulation |
|
logFC: 1.00E+00 p-value: 2.28E-08 |
More Results | Click to View More RNA-seq Results |
In total 1 item(s) under this regulator | ||||
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene | [3] | |||
Response Summary | METTL14 was found to inhibit HCC cell migration, invasion, and EMT through modulating Epidermal growth factor receptor (EGFR)/PI3K/AKT signaling pathway in an m6A-dependent manner. | |||
Target Regulation | Down regulation | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Cell Process | Epithelial-mesenchymal transition | |||
In-vitro Model | YY-8103 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_WY40 |
SMMC-7721 | Endocervical adenocarcinoma | Homo sapiens | CVCL_0534 | |
HCCLM3 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_6832 | |
L-02 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6926 | |
Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 | |
Hep 3B2.1-7 | Childhood hepatocellular carcinoma | Homo sapiens | CVCL_0326 | |
In-vivo Model | For the lung metastasis model, stably transfected HepG2 cells (1 × 106/0.1 mL DMEM) were injected into each nude mouse through the tail vein. Five weeks later, mice were euthanized, and the lung tissues were collected. | |||
Methyltransferase-like 3 (METTL3) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by METTL3 | ||
Cell Line | ARPE-19 cell line | Homo sapiens |
Treatment: shMETTL3 ARPE-19 cells
Control: shControl ARPE-19 cells
|
GSE202017 | |
Regulation |
|
logFC: -6.74E-01 p-value: 1.53E-03 |
More Results | Click to View More RNA-seq Results |
In total 1 item(s) under this regulator | ||||
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene | [4] | |||
Response Summary | METTL3 increased the m6A modification of Epidermal growth factor receptor (EGFR) mRNA in A375R cells, which promoted its translation efficiency. Inhibiting METTL3 function to restore PLX4032 sensitivity in patients with melanoma. | |||
Target Regulation | Up regulation | |||
Responsed Disease | Melanoma | ICD-11: 2C30 | ||
Responsed Drug | PLX4032 | Approved | ||
Pathway Response | EGFR tyrosine kinase inhibitor resistance | hsa01521 | ||
Cell Process | Cell apoptosis | |||
In-vitro Model | A375-R | Amelanotic melanoma | Homo sapiens | CVCL_6234 |
RNA demethylase ALKBH5 (ALKBH5) [ERASER]
Representative RNA-seq result indicating the expression of this target gene regulated by ALKBH5 | ||
Cell Line | 143B cell line | Homo sapiens |
Treatment: siALKBH5 transfected 143B cells
Control: siControl 143B cells
|
GSE154528 | |
Regulation |
|
logFC: 9.50E-01 p-value: 4.65E-04 |
More Results | Click to View More RNA-seq Results |
In total 1 item(s) under this regulator | ||||
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene | [5] | |||
Response Summary | ALKBH5 is a tumor-promoting gene in epithelial ovarian cancer, which is involved in the mTOR pathway and BCL-2-Beclin1 complex. ALKBH5 activated Epidermal growth factor receptor (EGFR)-PIK3CA-AKT-mTOR signaling pathway. ALKBH5 inhibited autophagy of epithelial ovarian cancer through miR-7 and BCL-2. | |||
Target Regulation | Up regulation | |||
Responsed Disease | Ovarian cancer | ICD-11: 2C73 | ||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
mTOR signaling pathway | hsa04150 | |||
In-vitro Model | A2780 | Ovarian endometrioid adenocarcinoma | Homo sapiens | CVCL_0134 |
CoC1 | Ovarian adenocarcinoma | Homo sapiens | CVCL_6891 | |
OVCAR-3 | Ovarian serous adenocarcinoma | Homo sapiens | CVCL_0465 | |
SK-OV-3 | Ovarian serous cystadenocarcinoma | Homo sapiens | CVCL_0532 | |
In-vivo Model | SKOV3 or A2780 cells were infected with the indicated lentiviral vectors and injected (5 × 106 cells/mouse in 200 uL volume) subcutaneously into the left armpit of 6-week-old BALB/c nude mice. After 21 days, the animals were sacrificed to confirm the presence of tumors and weigh the established tumors | |||
YTH domain-containing family protein 2 (YTHDF2) [READER]
Representative RIP-seq result supporting the interaction between EGFR and the regulator | ||
Cell Line | Hela | Homo sapiens |
Regulation | logFC: 1.61E+00 | GSE49339 |
In total 1 item(s) under this regulator | ||||
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene | [6] | |||
Response Summary | YTHDF2 acts as a tumor suppressor to repress cell proliferation and growth via destabilizing the Epidermal growth factor receptor (EGFR) mRNA in HCC. | |||
Target Regulation | Down regulation | |||
Responsed Disease | Hepatocellular carcinoma | ICD-11: 2C12.02 | ||
Pathway Response | MAPK signaling pathway | hsa04010 | ||
Cell Process | Glucose metabolism | |||
In-vitro Model | BEL-7402 | Endocervical adenocarcinoma | Homo sapiens | CVCL_5492 |
Hep 3B2.1-7 | Childhood hepatocellular carcinoma | Homo sapiens | CVCL_0326 | |
QGY-7703 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6715 | |
SMMC-7721 | Endocervical adenocarcinoma | Homo sapiens | CVCL_0534 | |
In-vivo Model | 5 × 106 of HEP3B and SMMC7721 stable cells were resuspended in 0.1 ml of PBS and subcutaneously injected into the flank of mice. | |||
YTH domain-containing family protein 3 (YTHDF3) [READER]
Representative RIP-seq result supporting the interaction between EGFR and the regulator | ||
Cell Line | Hela | Homo sapiens |
Regulation | logFC: 2.94E+00 | GSE86214 |
In total 1 item(s) under this regulator | ||||
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene | [7] | |||
Response Summary | Mechanistically, YTHDF3 enhances the translation of m6A-enriched transcripts for ST6GALNAC5, GJA1, and Epidermal growth factor receptor (EGFR), all associated with breast cancer brain metastasis. This work uncovers an essential role of YTHDF3 in controlling the interaction between cancer cells and brain microenvironment, thereby inducing brain metastatic competence. | |||
Target Regulation | Up regulation | |||
Responsed Disease | Breast cancer | ICD-11: 2C60 | ||
Cell Process | Cell metastasis | |||
In-vitro Model | MDA-MB-231Br (After brain metastases of MDA-MB-361 breast adenocarcinoma cells) | |||
MDA-MB-231 | Breast adenocarcinoma | Homo sapiens | CVCL_0062 | |
MDA-IBC-3 | Breast inflammatory carcinoma | Homo sapiens | CVCL_HC47 | |
JIMT-1Br3 (After brain metastases of JIMT-1 breast cancer cells) | ||||
JIMT-1 | Breast ductal carcinoma | Homo sapiens | CVCL_2077 | |
HEK293-FT | Normal | Homo sapiens | CVCL_6911 | |
HCC1954Br (After brain metastases of HCC1954 breast cancer cells) | ||||
HCC1954 | Breast ductal carcinoma | Homo sapiens | CVCL_1259 | |
bEnd.3 | Cerebrovascular endothelioma cells from mice | Mus musculus | CVCL_0170 | |
BEAS-2B | Normal | Homo sapiens | CVCL_0168 | |
4T1Br (After brain metastases of 4T1 mouse breast cancer cells) | ||||
4T1 | Normal | Mus musculus | CVCL_0125 | |
In-vivo Model | For the in vivo brain and bone extravasation and seeding assays, cancer cells labeled with CMFDA C2925 (Thermo fisher scientific) or GFP were injected intracardially into the nude mice. Cell number and injection procedure were described in "Animal Experiments". For the in vivo lung extravasation and seeding assays, cancer cells labeled with GFP (2.5 × 105 cells/mouse) were injected into the tail vein of nude mice. At 24 or 48 hrs later, the mice were sacrificed. | |||
Colorectal cancer [ICD-11: 2B91]
Liver cancer [ICD-11: 2C12]
In total 4 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response | [3] | |||
Response Summary | METTL14 was found to inhibit HCC cell migration, invasion, and EMT through modulating Epidermal growth factor receptor (EGFR)/PI3K/AKT signaling pathway in an m6A-dependent manner. | |||
Responsed Disease | Hepatocellular carcinoma [ICD-11: 2C12.02] | |||
Target Regulator | Methyltransferase-like 14 (METTL14) | WRITER | ||
Target Regulation | Down regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Cell Process | Epithelial-mesenchymal transition | |||
In-vitro Model | YY-8103 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_WY40 |
SMMC-7721 | Endocervical adenocarcinoma | Homo sapiens | CVCL_0534 | |
HCCLM3 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_6832 | |
L-02 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6926 | |
Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 | |
Hep 3B2.1-7 | Childhood hepatocellular carcinoma | Homo sapiens | CVCL_0326 | |
In-vivo Model | For the lung metastasis model, stably transfected HepG2 cells (1 × 106/0.1 mL DMEM) were injected into each nude mouse through the tail vein. Five weeks later, mice were euthanized, and the lung tissues were collected. | |||
Experiment 2 Reporting the m6A-centered Disease Response | [1] | |||
Response Summary | YTHDF1 regulates the translation of Epidermal growth factor receptor (EGFR) mRNA via binding m6 A sites in the 3'-UTR of EGFR transcript. YTHDF1 is upregulated in ICC and associated with shorter survival of ICC patients. | |||
Responsed Disease | Intrahepatic cholangiocarcinoma [ICD-11: 2C12.10] | |||
Target Regulator | YTH domain-containing family protein 1 (YTHDF1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
Cell Process | Cell proliferation | |||
Cell migration | ||||
Cell nvasion | ||||
In-vitro Model | HuCC-T1 | Intrahepatic cholangiocarcinoma | Homo sapiens | CVCL_0324 |
RBE | Intrahepatic cholangiocarcinoma | Homo sapiens | CVCL_4896 | |
In-vivo Model | For the subcutaneous implantation ICC mouse model, 6-week-old male NCG mice (Jiangsu, China) were randomly enrolled into shNC group and shYTHDF1 group (n = 9); 1 × 106 HuCCT1 cells in 0.1-mL PBS transfected with shNC or shYTHDF1 were subcutaneously inoculated in the right flanks of the mice. For AKT/YapS127A-induced orthotopic ICC mouse model, 16 mice were divided into two groups randomly. For the control group, 20-ug AKT, 30-ug Yap, and 2-ug pCMV/SB plasmids plus 20-ug vector plasmids as control were diluted in 2-mL saline and then were injected into the lateral tail vein within 7 s. For the YTHDF1-overexpressed group, mice were injected with additional 20-ug YTHDF1 plasmids under the same conditions. Mice were sacrificed at 4 weeks after injection, and liver tissues were harvested for analysis. | |||
Experiment 3 Reporting the m6A-centered Disease Response | [2] | |||
Response Summary | Sublethal heat treatment increases epidermal factor growth receptor (EGFR) m6A modification in the vicinity of the 5' untranslated region and promotes its binding with YTHDF1, which enhances the translation of Epidermal growth factor receptor (EGFR) mRNA. Combination of YTHDF1 silencing and EGFR inhibition suppressed the malignancies of HCC cells synergically. | |||
Responsed Disease | Hepatocellular carcinoma [ICD-11: 2C12.02] | |||
Target Regulator | YTH domain-containing family protein 1 (YTHDF1) | READER | ||
Target Regulation | Up regulation | |||
Pathway Response | mRNA surveillance pathway | hsa03015), RNA degradation | ||
Cell Process | RNA stability | |||
In-vivo Model | The caudal vein injection mouse model, intrasplenic injection mouse model, and orthotopic xenograft IRFA HCC mouse models, including patient-derived xenograft (PDX), and cell-line-derived xenograft implantation models, were established as reported. | |||
Experiment 4 Reporting the m6A-centered Disease Response | [6] | |||
Response Summary | YTHDF2 acts as a tumor suppressor to repress cell proliferation and growth via destabilizing the Epidermal growth factor receptor (EGFR) mRNA in HCC. | |||
Responsed Disease | Hepatocellular carcinoma [ICD-11: 2C12.02] | |||
Target Regulator | YTH domain-containing family protein 2 (YTHDF2) | READER | ||
Target Regulation | Down regulation | |||
Pathway Response | MAPK signaling pathway | hsa04010 | ||
Cell Process | Glucose metabolism | |||
In-vitro Model | BEL-7402 | Endocervical adenocarcinoma | Homo sapiens | CVCL_5492 |
Hep 3B2.1-7 | Childhood hepatocellular carcinoma | Homo sapiens | CVCL_0326 | |
QGY-7703 | Endocervical adenocarcinoma | Homo sapiens | CVCL_6715 | |
SMMC-7721 | Endocervical adenocarcinoma | Homo sapiens | CVCL_0534 | |
In-vivo Model | 5 × 106 of HEP3B and SMMC7721 stable cells were resuspended in 0.1 ml of PBS and subcutaneously injected into the flank of mice. | |||
Melanoma [ICD-11: 2C30]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response | [4] | |||
Response Summary | METTL3 increased the m6A modification of Epidermal growth factor receptor (EGFR) mRNA in A375R cells, which promoted its translation efficiency. Inhibiting METTL3 function to restore PLX4032 sensitivity in patients with melanoma. | |||
Responsed Disease | Melanoma [ICD-11: 2C30] | |||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Responsed Drug | PLX4032 | Approved | ||
Pathway Response | EGFR tyrosine kinase inhibitor resistance | hsa01521 | ||
Cell Process | Cell apoptosis | |||
In-vitro Model | A375-R | Amelanotic melanoma | Homo sapiens | CVCL_6234 |
Breast cancer [ICD-11: 2C60]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response | [7] | |||
Response Summary | Mechanistically, YTHDF3 enhances the translation of m6A-enriched transcripts for ST6GALNAC5, GJA1, and Epidermal growth factor receptor (EGFR), all associated with breast cancer brain metastasis. This work uncovers an essential role of YTHDF3 in controlling the interaction between cancer cells and brain microenvironment, thereby inducing brain metastatic competence. | |||
Responsed Disease | Breast cancer [ICD-11: 2C60] | |||
Target Regulator | YTH domain-containing family protein 3 (YTHDF3) | READER | ||
Target Regulation | Up regulation | |||
Cell Process | Cell metastasis | |||
In-vitro Model | MDA-MB-231Br (After brain metastases of MDA-MB-361 breast adenocarcinoma cells) | |||
MDA-MB-231 | Breast adenocarcinoma | Homo sapiens | CVCL_0062 | |
MDA-IBC-3 | Breast inflammatory carcinoma | Homo sapiens | CVCL_HC47 | |
JIMT-1Br3 (After brain metastases of JIMT-1 breast cancer cells) | ||||
JIMT-1 | Breast ductal carcinoma | Homo sapiens | CVCL_2077 | |
HEK293-FT | Normal | Homo sapiens | CVCL_6911 | |
HCC1954Br (After brain metastases of HCC1954 breast cancer cells) | ||||
HCC1954 | Breast ductal carcinoma | Homo sapiens | CVCL_1259 | |
bEnd.3 | Cerebrovascular endothelioma cells from mice | Mus musculus | CVCL_0170 | |
BEAS-2B | Normal | Homo sapiens | CVCL_0168 | |
4T1Br (After brain metastases of 4T1 mouse breast cancer cells) | ||||
4T1 | Normal | Mus musculus | CVCL_0125 | |
In-vivo Model | For the in vivo brain and bone extravasation and seeding assays, cancer cells labeled with CMFDA C2925 (Thermo fisher scientific) or GFP were injected intracardially into the nude mice. Cell number and injection procedure were described in "Animal Experiments". For the in vivo lung extravasation and seeding assays, cancer cells labeled with GFP (2.5 × 105 cells/mouse) were injected into the tail vein of nude mice. At 24 or 48 hrs later, the mice were sacrificed. | |||
Ovarian cancer [ICD-11: 2C73]
In total 1 item(s) under this disease | ||||
Experiment 1 Reporting the m6A-centered Disease Response | [5] | |||
Response Summary | ALKBH5 is a tumor-promoting gene in epithelial ovarian cancer, which is involved in the mTOR pathway and BCL-2-Beclin1 complex. ALKBH5 activated Epidermal growth factor receptor (EGFR)-PIK3CA-AKT-mTOR signaling pathway. ALKBH5 inhibited autophagy of epithelial ovarian cancer through miR-7 and BCL-2. | |||
Responsed Disease | Ovarian cancer [ICD-11: 2C73] | |||
Target Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | ||
Target Regulation | Up regulation | |||
Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
mTOR signaling pathway | hsa04150 | |||
In-vitro Model | A2780 | Ovarian endometrioid adenocarcinoma | Homo sapiens | CVCL_0134 |
CoC1 | Ovarian adenocarcinoma | Homo sapiens | CVCL_6891 | |
OVCAR-3 | Ovarian serous adenocarcinoma | Homo sapiens | CVCL_0465 | |
SK-OV-3 | Ovarian serous cystadenocarcinoma | Homo sapiens | CVCL_0532 | |
In-vivo Model | SKOV3 or A2780 cells were infected with the indicated lentiviral vectors and injected (5 × 106 cells/mouse in 200 uL volume) subcutaneously into the left armpit of 6-week-old BALB/c nude mice. After 21 days, the animals were sacrificed to confirm the presence of tumors and weigh the established tumors | |||
PLX4032
[Approved]
In total 1 item(s) under this drug | ||||
Experiment 1 Reporting the m6A-centered Drug Response | [4] | |||
Response Summary | METTL3 increased the m6A modification of Epidermal growth factor receptor (EGFR) mRNA in A375R cells, which promoted its translation efficiency. Inhibiting METTL3 function to restore PLX4032 sensitivity in patients with melanoma. | |||
Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
Target Regulation | Up regulation | |||
Responsed Disease | Melanoma | ICD-11: 2C30 | ||
Pathway Response | EGFR tyrosine kinase inhibitor resistance | hsa01521 | ||
Cell Process | Cell apoptosis | |||
In-vitro Model | A375-R | Amelanotic melanoma | Homo sapiens | CVCL_6234 |
References