General Information of the m6A Target Gene (ID: M6ATAR01574)
Target Name BDNF/NT-3 growth factors receptor (NTRK2)
Synonyms
EC 2.7.10.1; GP145-TrkB; Trk-B; Neurotrophic tyrosine kinase receptor type 2; TrkB tyrosine kinase; Tropomyosin-related kinase B
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Gene Name NTRK2
Chromosomal Location 9q21.33
Family Protein kinase superfamily, Tyr protein kinase family, Insulin receptor subfamily
Function
Receptor tyrosine kinase involved in the development and the maturation of the central and the peripheral nervous systems through regulation of neuron survival, proliferation, migration, differentiation, and synapse formation and plasticity (By similarity). Receptor for BDNF/brain-derived neurotrophic factor and NTF4/neurotrophin-4. Alternatively can also bind NTF3/neurotrophin-3 which is less efficient in activating the receptor but regulates neuron survival through NTRK2 (PubMed:7574684, PubMed:15494731). Upon ligand-binding, undergoes homodimerization, autophosphorylation and activation (PubMed:15494731). Recruits, phosphorylates and/or activates several downstream effectors including SHC1, FRS2, SH2B1, SH2B2 and PLCG1 that regulate distinct overlapping signaling cascades. Through SHC1, FRS2, SH2B1, SH2B2 activates the GRB2-Ras-MAPK cascade that regulates for instance neuronal differentiation including neurite outgrowth. Through the same effectors controls the Ras-PI3 kinase-AKT1 signaling cascade that mainly regulates growth and survival. Through PLCG1 and the downstream protein kinase C-regulated pathways controls synaptic plasticity. Thereby, plays a role in learning and memory by regulating both short term synaptic function and long-term potentiation. PLCG1 also leads to NF-Kappa-B activation and the transcription of genes involved in cell survival. Hence, it is able to suppress anoikis, the apoptosis resulting from loss of cell-matrix interactions. May also play a role in neutrophin-dependent calcium signaling in glial cells and mediate communication between neurons and glia.
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Gene ID 4915
Uniprot ID
NTRK2_HUMAN
HGNC ID
HGNC:8032
KEGG ID
hsa:4915
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
DNA modification
m6A Regulator: Fat mass and obesity-associated protein (FTO)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT02080
Epigenetic Regulator DNA (cytosine-5)-methyltransferase 1 (DNMT1)
Regulated Target FTO alpha-ketoglutarate dependent dioxygenase (FTO)
Crosstalk relationship DNA modification → m6A
Disease Major depressive disorder
Crosstalk ID: M6ACROT02084
Epigenetic Regulator Cysteine methyltransferase DNMT3A (DNMT3A)
Regulated Target FTO alpha-ketoglutarate dependent dioxygenase (FTO)
Crosstalk relationship DNA modification → m6A
Disease Major depressive disorder
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT02088
Epigenetic Regulator DNA (cytosine-5)-methyltransferase 1 (DNMT1)
Regulated Target FTO alpha-ketoglutarate dependent dioxygenase (FTO)
Crosstalk relationship DNA modification → m6A
Disease Major depressive disorder
Crosstalk ID: M6ACROT02092
Epigenetic Regulator Cysteine methyltransferase DNMT3A (DNMT3A)
Regulated Target FTO alpha-ketoglutarate dependent dioxygenase (FTO)
Crosstalk relationship DNA modification → m6A
Disease Major depressive disorder
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01574)
BDNF/NT-3 growth factors receptor (NTRK2)
Adenosine-to-Inosine editing (A-to-I)
In total 14 m6A sequence/site(s) in this target gene
mod ID: A2ISITE003175 Click to Show/Hide the Full List
mod site chr9:84686361-84686362:+ [2]
Sequence GAGCACACAAGCTCAGCAACAGAGGAAAATCCAGGGGAAAA
Transcript ID List ENST00000395882.5; ENST00000376208.5; ENST00000277120.7; ENST00000359847.3; ENST00000376213.5; ENST00000323115.9; ENST00000304053.10; ENST00000376214.5
External Link RMBase: RNA-editing_site_135967
mod ID: A2ISITE003176 Click to Show/Hide the Full List
mod site chr9:84686383-84686384:+ [2]
Sequence AGGAAAATCCAGGGGAAAAGAATCACTCCAGGGTCACCTGA
Transcript ID List ENST00000304053.10; ENST00000376213.5; ENST00000395882.5; ENST00000323115.9; ENST00000376208.5; ENST00000359847.3; ENST00000376214.5; ENST00000277120.7
External Link RMBase: RNA-editing_site_135968
mod ID: A2ISITE003177 Click to Show/Hide the Full List
mod site chr9:84694822-84694823:+ [2]
Sequence TCTGTCTATCTAGAGATGATAGATAGATTGATAGATATCAT
Transcript ID List ENST00000277120.7; rmsk_2796144; ENST00000376213.5; ENST00000304053.10; ENST00000395882.5; ENST00000376208.5; ENST00000359847.3; ENST00000323115.9; ENST00000376214.5
External Link RMBase: RNA-editing_site_135969
mod ID: A2ISITE003178 Click to Show/Hide the Full List
mod site chr9:84719841-84719842:+ [2]
Sequence CAGCCTGGGCAATGTGGCGAAACCGCATCTCTACCAAAAAT
Transcript ID List ENST00000395882.5; ENST00000277120.7; ENST00000304053.10; ENST00000376208.5; ENST00000359847.3; rmsk_2796179; ENST00000376213.5; ENST00000323115.9; ENST00000376214.5
External Link RMBase: RNA-editing_site_135970
mod ID: A2ISITE003179 Click to Show/Hide the Full List
mod site chr9:84719842-84719843:+ [2]
Sequence AGCCTGGGCAATGTGGCGAAACCGCATCTCTACCAAAAATA
Transcript ID List ENST00000323115.9; ENST00000277120.7; ENST00000359847.3; ENST00000304053.10; ENST00000376214.5; rmsk_2796179; ENST00000376208.5; ENST00000376213.5; ENST00000395882.5
External Link RMBase: RNA-editing_site_135971
mod ID: A2ISITE003180 Click to Show/Hide the Full List
mod site chr9:84732052-84732053:+ [3]
Sequence CTTTGGGTCCCACATTTAAGAATTGAACTTAGCTCTGGTTA
Transcript ID List ENST00000376208.5; ENST00000376214.5; ENST00000323115.9; ENST00000376213.5; ENST00000277120.7; ENST00000395882.5; ENST00000304053.10; ENST00000359847.3
External Link RMBase: RNA-editing_site_135972
mod ID: A2ISITE003181 Click to Show/Hide the Full List
mod site chr9:84794974-84794975:+ [2]
Sequence CTCCCTAGCCTGGGACTTGGAAACATCTACTGTCTTAATTC
Transcript ID List ENST00000359847.3; ENST00000277120.7; ENST00000395882.5; ENST00000376213.5; ENST00000376208.5; ENST00000323115.9; ENST00000376214.5; ENST00000304053.10
External Link RMBase: RNA-editing_site_135973
mod ID: A2ISITE003182 Click to Show/Hide the Full List
mod site chr9:84949490-84949491:+ [2]
Sequence TTTATTTATTTATTTGAGACAGAGTCTCGCTCTGTCACCCA
Transcript ID List ENST00000323115.9; ENST00000376213.5; ENST00000376214.5; ENST00000277120.7
External Link RMBase: RNA-editing_site_135974
mod ID: A2ISITE003183 Click to Show/Hide the Full List
mod site chr9:84966387-84966388:+ [2]
Sequence ATATTCTTCACAAGCTTCTTAGCTGAGTCTGATGTCCAGCC
Transcript ID List ENST00000277120.7; ENST00000376214.5; ENST00000323115.9; rmsk_2796598; ENST00000376213.5
External Link RMBase: RNA-editing_site_135975
mod ID: A2ISITE003184 Click to Show/Hide the Full List
mod site chr9:84997029-84997030:+ [2]
Sequence TCACATTCAACTGGGTGATAAGCAGCATGTGTCTGCACCCC
Transcript ID List ENST00000376214.5; ENST00000277120.7; ENST00000376213.5; ENST00000323115.9
External Link RMBase: RNA-editing_site_135976
mod ID: A2ISITE003185 Click to Show/Hide the Full List
mod site chr9:84997084-84997085:+ [2]
Sequence TGTGGAGGCAAAGCATGCATACCTTTTACAGTCCTTGTAAA
Transcript ID List ENST00000277120.7; ENST00000376213.5; ENST00000376214.5; ENST00000323115.9
External Link RMBase: RNA-editing_site_135977
mod ID: A2ISITE003186 Click to Show/Hide the Full List
mod site chr9:84997091-84997092:+ [2]
Sequence GCAAAGCATGCATACCTTTTACAGTCCTTGTAAAGCCAGTG
Transcript ID List ENST00000376214.5; ENST00000376213.5; ENST00000277120.7; ENST00000323115.9
External Link RMBase: RNA-editing_site_135978
mod ID: A2ISITE003187 Click to Show/Hide the Full List
mod site chr9:85008712-85008713:+ [2]
Sequence GAAGCCTGGGTCTTCACTGTAGTTCAGTGTATCATACAACT
Transcript ID List ENST00000376213.5; ENST00000277120.7; ENST00000323115.9; ENST00000376214.5
External Link RMBase: RNA-editing_site_135979
mod ID: A2ISITE003188 Click to Show/Hide the Full List
mod site chr9:85024207-85024208:+ [2]
Sequence TATCAGATTGCTTTTAAAGTAGCTGAACGAGCCACAGAATA
Transcript ID List ENST00000277120.7; ENST00000323115.9
External Link RMBase: RNA-editing_site_135980
N6-methyladenosine (m6A)
In total 23 m6A sequence/site(s) in this target gene
mod ID: M6ASITE088463 Click to Show/Hide the Full List
mod site chr9:84669848-84669849:+ [4]
Sequence CGGCGGTAGCAGGAGCCTGGACCCAGGCGCCGCCGGCGGGC
Motif Score 3.622404762
Cell/Tissue List GSC-11
Seq Type List m6A-seq
Transcript ID List ENST00000277120.7; ENST00000376214.5; ENST00000304053.10; ENST00000395882.5; ENST00000376213.5; ENST00000376208.5
External Link RMBase: m6A_site_825835
mod ID: M6ASITE088464 Click to Show/Hide the Full List
mod site chr9:84670394-84670395:+ [4]
Sequence AGCCTCGAGGTGCATACCGGACCCCCATTCGCATCTAACAA
Motif Score 3.622404762
Cell/Tissue List GSC-11
Seq Type List m6A-seq
Transcript ID List ENST00000304053.10; ENST00000395882.5; ENST00000376214.5; ENST00000376213.5; ENST00000277120.7; ENST00000376208.5
External Link RMBase: m6A_site_825836
mod ID: M6ASITE088465 Click to Show/Hide the Full List
mod site chr9:84670556-84670557:+ [4]
Sequence CTATGCCGGGGCCACTGTGAACCCTGCCGCCTGCCGGAACA
Motif Score 2.930744048
Cell/Tissue List GSC-11
Seq Type List m6A-seq
Transcript ID List ENST00000376208.5; ENST00000376214.5; ENST00000304053.10; ENST00000376213.5; ENST00000395882.5; ENST00000277120.7
External Link RMBase: m6A_site_825837
mod ID: M6ASITE088466 Click to Show/Hide the Full List
mod site chr9:84670574-84670575:+ [4]
Sequence GAACCCTGCCGCCTGCCGGAACACTCTTCGCTCCGGACCAG
Motif Score 2.951386905
Cell/Tissue List GSC-11; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000395882.5; ENST00000304053.10; ENST00000376208.5; ENST00000376214.5; ENST00000277120.7; ENST00000376213.5
External Link RMBase: m6A_site_825838
mod ID: M6ASITE088467 Click to Show/Hide the Full List
mod site chr9:84670590-84670591:+ [4]
Sequence CGGAACACTCTTCGCTCCGGACCAGCTCAGCCTCTGATAAG
Motif Score 3.622404762
Cell/Tissue List GSC-11; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000277120.7; ENST00000376208.5; ENST00000376214.5; ENST00000395882.5; ENST00000376213.5; ENST00000304053.10
External Link RMBase: m6A_site_825839
mod ID: M6ASITE088468 Click to Show/Hide the Full List
mod site chr9:84670615-84670616:+ [4]
Sequence CTCAGCCTCTGATAAGCTGGACTCGGCACGCCCGCAACAAG
Motif Score 4.065041667
Cell/Tissue List GSC-11; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000304053.10; ENST00000376214.5; ENST00000277120.7; ENST00000376208.5; ENST00000395882.5; ENST00000376213.5
External Link RMBase: m6A_site_825840
mod ID: M6ASITE088469 Click to Show/Hide the Full List
mod site chr9:84670716-84670717:+ [4]
Sequence GCGGCCGGTGCAGCGCGGGGACAGGCACTCGGGCTGGCACT
Motif Score 3.643047619
Cell/Tissue List GSC-11; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000376214.5; ENST00000277120.7; ENST00000376208.5; ENST00000359847.3; ENST00000304053.10; ENST00000376213.5; ENST00000395882.5
External Link RMBase: m6A_site_825841
mod ID: M6ASITE088470 Click to Show/Hide the Full List
mod site chr9:84670774-84670775:+ [4]
Sequence TCCTGGATAAGGTGGCATGGACCCGCCATGGCGCGGCTCTG
Motif Score 3.622404762
Cell/Tissue List GSC-11; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000359847.3; ENST00000376213.5; ENST00000277120.7; ENST00000376214.5; ENST00000304053.10; ENST00000395882.5; ENST00000376208.5; ENST00000323115.9
External Link RMBase: m6A_site_825842
mod ID: M6ASITE088471 Click to Show/Hide the Full List
mod site chr9:84745063-84745064:+ [5]
Sequence ACTGATAAAACCGGTCGGGAACATCTCTCGGTGAGTGGAAT
Motif Score 2.951386905
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000376214.5; ENST00000359847.3; ENST00000395882.5; ENST00000277120.7; ENST00000376213.5; ENST00000304053.10; ENST00000376208.5; ENST00000323115.9
External Link RMBase: m6A_site_825843
mod ID: M6ASITE088472 Click to Show/Hide the Full List
mod site chr9:84810647-84810648:+ [6]
Sequence GATGCTGCCATGTAAGCTGGACTCCTGGGACTGCTGTTGGC
Motif Score 4.065041667
Cell/Tissue List TREX
Seq Type List MeRIP-seq
Transcript ID List ENST00000395882.5; ENST00000376208.5; ENST00000323115.9; ENST00000376213.5; ENST00000376214.5; ENST00000304053.10; ENST00000359847.3; ENST00000277120.7
External Link RMBase: m6A_site_825844
mod ID: M6ASITE088473 Click to Show/Hide the Full List
mod site chr9:84810656-84810657:+ [6]
Sequence ATGTAAGCTGGACTCCTGGGACTGCTGTTGGCTTATCCCGG
Motif Score 4.065041667
Cell/Tissue List TREX
Seq Type List MeRIP-seq
Transcript ID List ENST00000395882.5; ENST00000304053.10; ENST00000376214.5; ENST00000376213.5; ENST00000359847.3; ENST00000323115.9; ENST00000277120.7; ENST00000376208.5
External Link RMBase: m6A_site_825845
mod ID: M6ASITE088474 Click to Show/Hide the Full List
mod site chr9:84810932-84810933:+ [5]
Sequence GTGCTTTTTGACCCTACTGGACATTTATTGACTTAATTGCT
Motif Score 3.643047619
Cell/Tissue List brain; kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000395882.5; ENST00000376214.5; ENST00000376213.5; ENST00000277120.7; ENST00000376208.5; ENST00000323115.9; ENST00000359847.3; ENST00000304053.10
External Link RMBase: m6A_site_825846
mod ID: M6ASITE088475 Click to Show/Hide the Full List
mod site chr9:84813321-84813322:+ [5]
Sequence CTTGTGATTCTTTAGGAGAAACATGAAACCTGGATTTCGTG
Motif Score 2.20572619
Cell/Tissue List brain
Seq Type List m6A-REF-seq
Transcript ID List ENST00000395882.5; ENST00000304053.10; ENST00000359847.3; ENST00000376214.5; ENST00000277120.7; ENST00000323115.9; ENST00000376208.5; ENST00000376213.5
External Link RMBase: m6A_site_825847
mod ID: M6ASITE088476 Click to Show/Hide the Full List
mod site chr9:84814277-84814278:+ [5]
Sequence GGCTTGGAGCATCTCCTCAGACAGAGCAGAGGCGACACCTC
Motif Score 2.897386905
Cell/Tissue List brain
Seq Type List m6A-REF-seq
Transcript ID List ENST00000376208.5; ENST00000376214.5; ENST00000277120.7; ENST00000359847.3; ENST00000376213.5; ENST00000304053.10; ENST00000323115.9; ENST00000395882.5
External Link RMBase: m6A_site_825848
mod ID: M6ASITE088477 Click to Show/Hide the Full List
mod site chr9:84872100-84872101:+ [5]
Sequence TGGAGCTGAGGAGCTCAGCAACATCAAGTCTGGAGTTGGTC
Motif Score 2.173910714
Cell/Tissue List brain
Seq Type List m6A-REF-seq
Transcript ID List ENST00000376208.5; ENST00000376214.5; ENST00000323115.9; ENST00000376213.5; ENST00000277120.7; ENST00000304053.10
External Link RMBase: m6A_site_825849
mod ID: M6ASITE088478 Click to Show/Hide the Full List
mod site chr9:84948621-84948622:+ [5]
Sequence CATGAAGCATGGGGACCTCAACAAGTTCCTCAGGTACAGTG
Motif Score 2.173910714
Cell/Tissue List brain
Seq Type List m6A-REF-seq
Transcript ID List ENST00000376213.5; ENST00000323115.9; ENST00000376214.5; ENST00000277120.7
External Link RMBase: m6A_site_825850
mod ID: M6ASITE088479 Click to Show/Hide the Full List
mod site chr9:85021423-85021424:+ [7]
Sequence GGCATCTCCGGTCTACCTGGACATTCTAGGCTAGGGCCCTT
Motif Score 3.643047619
Cell/Tissue List Brain
Seq Type List m6A-seq
Transcript ID List ENST00000277120.7; ENST00000376214.5; ENST00000323115.9; ENST00000376213.5
External Link RMBase: m6A_site_825851
mod ID: M6ASITE088480 Click to Show/Hide the Full List
mod site chr9:85021452-85021453:+ [7]
Sequence GCTAGGGCCCTTTTCCCCAGACCGATCCTTCCCAACGTACT
Motif Score 2.876744048
Cell/Tissue List Brain
Seq Type List m6A-seq
Transcript ID List ENST00000277120.7; ENST00000323115.9; ENST00000376213.5; ENST00000376214.5
External Link RMBase: m6A_site_825852
mod ID: M6ASITE088481 Click to Show/Hide the Full List
mod site chr9:85021496-85021497:+ [7]
Sequence CAGACGGGCTGAGAGGATGAACATCTTTTAACTGCCGCTGG
Motif Score 2.951386905
Cell/Tissue List Brain; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000376213.5; ENST00000323115.9; ENST00000376214.5; ENST00000277120.7
External Link RMBase: m6A_site_825853
mod ID: M6ASITE088482 Click to Show/Hide the Full List
mod site chr9:85021564-85021565:+ [8]
Sequence TGACAGTATTAACATCAAAGACTCCGAGAAGCTCTCGAGGG
Motif Score 3.319380952
Cell/Tissue List GM12878; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000277120.7; ENST00000376214.5; ENST00000376213.5; ENST00000323115.9
External Link RMBase: m6A_site_825854
mod ID: M6ASITE088483 Click to Show/Hide the Full List
mod site chr9:85022813-85022814:+ [8]
Sequence ATGGGTTTTAATGAATATGGACCCTGAAGCCTGGAAATCCT
Motif Score 3.622404762
Cell/Tissue List GM12878
Seq Type List m6A-seq
Transcript ID List ENST00000376214.5; ENST00000376213.5; ENST00000323115.9; ENST00000277120.7
External Link RMBase: m6A_site_825855
mod ID: M6ASITE088484 Click to Show/Hide the Full List
mod site chr9:85022846-85022847:+ [8]
Sequence GAAATCCTCATCCACGTCGAACCCACAGGACTGTGGGAAGG
Motif Score 2.930744048
Cell/Tissue List GM12878
Seq Type List m6A-seq
Transcript ID List ENST00000376213.5; ENST00000277120.7; ENST00000376214.5; ENST00000323115.9
External Link RMBase: m6A_site_825856
mod ID: M6ASITE088485 Click to Show/Hide the Full List
mod site chr9:85022855-85022856:+ [8]
Sequence ATCCACGTCGAACCCACAGGACTGTGGGAAGGGCAGAATCA
Motif Score 4.065041667
Cell/Tissue List GM12878
Seq Type List m6A-seq
Transcript ID List ENST00000277120.7; ENST00000323115.9; ENST00000376214.5; ENST00000376213.5
External Link RMBase: m6A_site_825857