General Information of the m6A Target Gene (ID: M6ATAR00267)
Target Name Zinc finger protein GLI1 (GLI1)
Synonyms
Glioma-associated oncogene; Oncogene GLI; GLI
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Gene Name GLI1
Chromosomal Location 12q13.3
Family GLI C2H2-type zinc-finger protein family
Function
Acts as a transcriptional activator. Binds to the DNA consensus sequence 5'-GACCACCCA-3'. Regulates the transcription of specific genes during normal development. Plays a role in craniofacial development and digital development, as well as development of the central nervous system and gastrointestinal tract. Mediates SHH signaling. Plays a role in cell proliferation and differentiation via its role in SHH signaling. [Isoform 2]: Acts as a transcriptional activator, but activates a different set of genes than isoform 1. Activates expression of CD24, unlike isoform 1. Mediates SHH signaling. Promotes cancer cell migration.
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Gene ID 2735
Uniprot ID
GLI1_HUMAN
HGNC ID
HGNC:4317
KEGG ID
hsa:2735
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
GLI1 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
Methyltransferase-like 3 (METTL3) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by METTL3
Cell Line HUVEC cell line Homo sapiens
Treatment: shMETTL3 HUVEC cells
Control: shScramble HUVEC cells
GSE157544
Regulation
logFC: 7.30E-01
p-value: 2.91E-03
More Results Click to View More RNA-seq Results
Representative RIP-seq result supporting the interaction between GLI1 and the regulator
Cell Line MDA-MB-231 Homo sapiens
Regulation logFC: 7.23E+00 GSE60213
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary METTL3 silence decreased the m6A modification and expression of Zinc finger protein GLI1 (GLI1), an important component of hedgehog pathway, which led to cell apoptosis.the m6A methyltransferase METTL3 promotes the growth and motility of prostate cancer cells by regulating hedgehog pathway.
Target Regulation Up regulation
Responsed Disease Prostate cancer ICD-11: 2C82
Pathway Response Hedgehog signaling pathway hsa04340
Cell Process Cell proliferation
Cell survival
Cell colony formation
Cell invasion
In-vitro Model LNCaP C4-2 Prostate carcinoma Homo sapiens CVCL_4782
LNCaP C4-2B Prostate carcinoma Homo sapiens CVCL_4784
DU145 Prostate carcinoma Homo sapiens CVCL_0105
LNCaP Prostate carcinoma Homo sapiens CVCL_0395
PC-3 Prostate carcinoma Homo sapiens CVCL_0035
In-vivo Model Equal number of PC-3 cells was injected subcutaneously into right flank.
Prostate cancer [ICD-11: 2C82]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary METTL3 silence decreased the m6A modification and expression of Zinc finger protein GLI1 (GLI1), an important component of hedgehog pathway, which led to cell apoptosis.the m6A methyltransferase METTL3 promotes the growth and motility of prostate cancer cells by regulating hedgehog pathway.
Responsed Disease Prostate cancer [ICD-11: 2C82]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
Pathway Response Hedgehog signaling pathway hsa04340
Cell Process Cell proliferation
Cell survival
Cell colony formation
Cell invasion
In-vitro Model LNCaP C4-2 Prostate carcinoma Homo sapiens CVCL_4782
LNCaP C4-2B Prostate carcinoma Homo sapiens CVCL_4784
DU145 Prostate carcinoma Homo sapiens CVCL_0105
LNCaP Prostate carcinoma Homo sapiens CVCL_0395
PC-3 Prostate carcinoma Homo sapiens CVCL_0035
In-vivo Model Equal number of PC-3 cells was injected subcutaneously into right flank.
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Non-coding RNA
m6A Regulator: Insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05889
Epigenetic Regulator Long intergenic non-protein coding RNA 1093 (LINC01093)
Regulated Target Insulin like growth factor 2 mRNA binding protein 1 (IGF2BP1)
Crosstalk relationship ncRNA → m6A
Disease Hepatocellular carcinoma
Crosstalk ID: M6ACROT05893
Epigenetic Regulator Testis associated oncogenic lncRNA (THORLNC)
Regulated Target Insulin like growth factor 2 mRNA binding protein 1 (IGF2BP1)
Crosstalk relationship ncRNA → m6A
Disease Nasopharyngeal carcinoma
Drug Triptonide
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00267)
Zinc finger protein GLI1 (GLI1)
Adenosine-to-Inosine editing (A-to-I)
In total 1 m6A sequence/site(s) in this target gene
mod ID: A2ISITE005629 Click to Show/Hide the Full List
mod site chr12:57470840-57470841:+ [4]
Sequence AGAATGCTGCCATGGATGCTAGAGGGCTACAGGAAGAGCCA
Transcript ID List ENST00000228682.7; ENST00000543426.5; ENST00000546141.5; ENST00000528467.1
External Link RMBase: RNA-editing_site_29456
N6-methyladenosine (m6A)
In total 34 m6A sequence/site(s) in this target gene
mod ID: M6ASITE013560 Click to Show/Hide the Full List
mod site chr12:57464759-57464760:+ [5]
Sequence TCTGTCGGATGCCAGCCTGGACCTGCAGACGGTTATCCGCA
Motif Score 3.622404762
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000543426.5; ENST00000532291.5; ENST00000528467.1; ENST00000546141.5; ENST00000228682.7; ENST00000528432.1; ENST00000530789.1
External Link RMBase: m6A_site_195033
mod ID: M6ASITE013561 Click to Show/Hide the Full List
mod site chr12:57464939-57464940:+ [5]
Sequence TAAAAGTCTCAAGCCCTCAAACTACCTAACCCTATTTGAAT
Motif Score 2.627720238
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000530789.1; ENST00000528467.1; ENST00000228682.7; ENST00000546141.5; ENST00000543426.5; ENST00000532291.5
External Link RMBase: m6A_site_195034
mod ID: M6ASITE013562 Click to Show/Hide the Full List
mod site chr12:57466358-57466359:+ [6]
Sequence CTGGTGGTTCACATGCGCAGACACACTGGCGAGAAGCCACA
Motif Score 2.897386905
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000546141.5; ENST00000532291.5; ENST00000543426.5; ENST00000528467.1; ENST00000228682.7
External Link RMBase: m6A_site_195035
mod ID: M6ASITE013563 Click to Show/Hide the Full List
mod site chr12:57467369-57467370:+ [6]
Sequence GTCATACTCACGCCTCGAAAACCTGAAGACGCACCTGCGGT
Motif Score 2.185083333
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000528467.1; ENST00000228682.7; ENST00000543426.5; ENST00000546141.5
External Link RMBase: m6A_site_195036
mod ID: M6ASITE013564 Click to Show/Hide the Full List
mod site chr12:57468199-57468200:+ [6]
Sequence CCCATCAGGGAGGAAAGCAGACTGACTGTGCCAGAGGGTGC
Motif Score 3.319380952
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000546141.5; ENST00000528467.1; ENST00000228682.7; ENST00000543426.5
External Link RMBase: m6A_site_195037
mod ID: M6ASITE013565 Click to Show/Hide the Full List
mod site chr12:57469506-57469507:+ [7]
Sequence AGGGAGTGCAGCCAATACAGACAGTGGTGTGGAAATGACTG
Motif Score 2.897386905
Cell/Tissue List H1A; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000546141.5; ENST00000228682.7; ENST00000543426.5; ENST00000528467.1
External Link RMBase: m6A_site_195038
mod ID: M6ASITE013566 Click to Show/Hide the Full List
mod site chr12:57469551-57469552:+ [7]
Sequence TGCAGGGGGCAGCACTGAAGACCTCTCCAGCTTGGACGAGG
Motif Score 2.876744048
Cell/Tissue List H1A; H1B; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000528467.1; ENST00000543426.5; ENST00000228682.7; ENST00000546141.5
External Link RMBase: m6A_site_195039
mod ID: M6ASITE013567 Click to Show/Hide the Full List
mod site chr12:57469573-57469574:+ [7]
Sequence CTCTCCAGCTTGGACGAGGGACCTTGCATTGCTGGCACTGG
Motif Score 3.622404762
Cell/Tissue List H1A; H1B; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000546141.5; ENST00000543426.5; ENST00000228682.7; ENST00000528467.1
External Link RMBase: m6A_site_195040
mod ID: M6ASITE013568 Click to Show/Hide the Full List
mod site chr12:57469620-57469621:+ [7]
Sequence CACTCTTCGCCGCCTTGAGAACCTCAGGCTGGACCAGCTAC
Motif Score 2.930744048
Cell/Tissue List H1A; H1B; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000528467.1; ENST00000228682.7; ENST00000546141.5; ENST00000543426.5
External Link RMBase: m6A_site_195041
mod ID: M6ASITE013569 Click to Show/Hide the Full List
mod site chr12:57469632-57469633:+ [7]
Sequence CCTTGAGAACCTCAGGCTGGACCAGCTACATCAACTCCGGC
Motif Score 3.622404762
Cell/Tissue List H1A; H1B; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000228682.7; ENST00000543426.5; ENST00000546141.5; ENST00000528467.1
External Link RMBase: m6A_site_195042
mod ID: M6ASITE013570 Click to Show/Hide the Full List
mod site chr12:57469661-57469662:+ [7]
Sequence ATCAACTCCGGCCAATAGGGACCCGGGGTCTCAAACTGCCC
Motif Score 3.622404762
Cell/Tissue List H1A; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000543426.5; ENST00000546141.5; ENST00000528467.1; ENST00000228682.7
External Link RMBase: m6A_site_195043
mod ID: M6ASITE013571 Click to Show/Hide the Full List
mod site chr12:57469675-57469676:+ [6]
Sequence ATAGGGACCCGGGGTCTCAAACTGCCCAGCTTGTCCCACAC
Motif Score 2.627720238
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000546141.5; ENST00000528467.1; ENST00000543426.5; ENST00000228682.7
External Link RMBase: m6A_site_195044
mod ID: M6ASITE013572 Click to Show/Hide the Full List
mod site chr12:57470758-57470759:+ [8]
Sequence CCCACTGTGGCAGGGGGAGGACAGAACTTTGATCCTTACCT
Motif Score 3.643047619
Cell/Tissue List A549; U2OS; H1B; hESCs; GSC-11; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000543426.5; ENST00000546141.5; ENST00000528467.1; ENST00000228682.7
External Link RMBase: m6A_site_195045
mod ID: M6ASITE013573 Click to Show/Hide the Full List
mod site chr12:57470763-57470764:+ [8]
Sequence TGTGGCAGGGGGAGGACAGAACTTTGATCCTTACCTCCCAA
Motif Score 3.373380952
Cell/Tissue List A549; U2OS; H1B; hESCs; GSC-11; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000228682.7; ENST00000546141.5; ENST00000528467.1; ENST00000543426.5
External Link RMBase: m6A_site_195046
mod ID: M6ASITE013574 Click to Show/Hide the Full List
mod site chr12:57470870-57470871:+ [9]
Sequence AGGAAGAGCCAGAAGTTGGGACCTCCATGGTGGGCAGTGGT
Motif Score 3.622404762
Cell/Tissue List HeLa; A549; U2OS; H1A; H1B; hESCs; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000543426.5; ENST00000228682.7; ENST00000546141.5; ENST00000528467.1
External Link RMBase: m6A_site_195047
mod ID: M6ASITE013575 Click to Show/Hide the Full List
mod site chr12:57470895-57470896:+ [9]
Sequence CATGGTGGGCAGTGGTCTGAACCCCTATATGGACTTCCCAC
Motif Score 2.930744048
Cell/Tissue List HeLa; A549; U2OS; H1A; H1B; hESCs; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228682.7; ENST00000546141.5; ENST00000543426.5; ENST00000528467.1
External Link RMBase: m6A_site_195048
mod ID: M6ASITE013576 Click to Show/Hide the Full List
mod site chr12:57470907-57470908:+ [9]
Sequence TGGTCTGAACCCCTATATGGACTTCCCACCTACTGATACTC
Motif Score 4.065041667
Cell/Tissue List HeLa; A549; U2OS; H1A; H1B; hESCs; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228682.7; ENST00000546141.5; ENST00000543426.5; ENST00000528467.1
External Link RMBase: m6A_site_195049
mod ID: M6ASITE013577 Click to Show/Hide the Full List
mod site chr12:57470941-57470942:+ [9]
Sequence GATACTCTGGGATATGGGGGACCTGAAGGGGCAGCAGCTGA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; U2OS; H1A; H1B; hESCs; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000528467.1; ENST00000546141.5; ENST00000228682.7; ENST00000543426.5
External Link RMBase: m6A_site_195050
mod ID: M6ASITE013578 Click to Show/Hide the Full List
mod site chr12:57471074-57471075:+ [8]
Sequence ATCCTGACCCCACCCAAGAAACATGGGGTGAGTTCCCTTCC
Motif Score 2.20572619
Cell/Tissue List HEK293T; A549; U2OS; H1A; H1B; hESCs; GSC-11; TREX; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000228682.7; ENST00000528467.1; ENST00000546141.5; ENST00000543426.5
External Link RMBase: m6A_site_195051
mod ID: M6ASITE013579 Click to Show/Hide the Full List
mod site chr12:57471134-57471135:+ [8]
Sequence GCCCCAAGGCTCTAGGTGGAACCTACAGCCAGTGTCCTCGA
Motif Score 2.930744048
Cell/Tissue List A549; HEK293T; U2OS; H1A; H1B; hESCs; Huh7; GSC-11; HEK293A-TOA; TREX; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000543426.5; ENST00000528467.1; ENST00000228682.7; ENST00000546141.5
External Link RMBase: m6A_site_195052
mod ID: M6ASITE013580 Click to Show/Hide the Full List
mod site chr12:57471160-57471161:+ [8]
Sequence AGCCAGTGTCCTCGACTTGAACATTATGGACAAGTGCAAGT
Motif Score 2.951386905
Cell/Tissue List A549; HEK293T; U2OS; H1A; H1B; hESCs; GM12878; Huh7; GSC-11; HEK293A-TOA; MSC; TREX; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000228682.7; ENST00000528467.1; ENST00000546141.5; ENST00000543426.5
External Link RMBase: m6A_site_195053
mod ID: M6ASITE013581 Click to Show/Hide the Full List
mod site chr12:57471169-57471170:+ [8]
Sequence CCTCGACTTGAACATTATGGACAAGTGCAAGTCAAGCCAGA
Motif Score 3.643047619
Cell/Tissue List A549; HEK293T; U2OS; H1A; H1B; hESCs; GM12878; Huh7; GSC-11; HEK293A-TOA; MSC; TREX; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000528467.1; ENST00000543426.5; ENST00000546141.5; ENST00000228682.7
External Link RMBase: m6A_site_195054
mod ID: M6ASITE013582 Click to Show/Hide the Full List
mod site chr12:57471190-57471191:+ [8]
Sequence CAAGTGCAAGTCAAGCCAGAACAGGGGTGCCCAGTGGGGTC
Motif Score 2.951386905
Cell/Tissue List A549; HEK293T; U2OS; H1A; H1B; hESCs; GM12878; Huh7; GSC-11; HEK293A-TOA; MSC; TREX; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000528467.1; ENST00000546141.5; ENST00000543426.5; ENST00000228682.7
External Link RMBase: m6A_site_195055
mod ID: M6ASITE013583 Click to Show/Hide the Full List
mod site chr12:57471223-57471224:+ [8]
Sequence GTGGGGTCTGACTCCACAGGACTGGCACCCTGCCTCAATGC
Motif Score 4.065041667
Cell/Tissue List A549; HEK293T; U2OS; H1A; H1B; hESCs; GM12878; Huh7; GSC-11; HEK293A-TOA; MSC; TREX; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000528467.1; ENST00000546141.5; ENST00000228682.7; ENST00000543426.5
External Link RMBase: m6A_site_195056
mod ID: M6ASITE013584 Click to Show/Hide the Full List
mod site chr12:57471367-57471368:+ [8]
Sequence CCTGATTATCTTCCTTCAGAACCCAGGCCTTGCCTGGACTT
Motif Score 2.930744048
Cell/Tissue List A549; Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000546141.5; ENST00000228682.7; ENST00000543426.5; ENST00000528467.1
External Link RMBase: m6A_site_195057
mod ID: M6ASITE013585 Click to Show/Hide the Full List
mod site chr12:57471384-57471385:+ [8]
Sequence AGAACCCAGGCCTTGCCTGGACTTTGATTCCCCCACCCATT
Motif Score 4.065041667
Cell/Tissue List A549; Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000543426.5; ENST00000546141.5; ENST00000528467.1; ENST00000228682.7
External Link RMBase: m6A_site_195058
mod ID: M6ASITE013586 Click to Show/Hide the Full List
mod site chr12:57471586-57471587:+ [5]
Sequence GCTCCAGTGAACACATATGGACCTGGCTTTGGACCCAACTT
Motif Score 3.622404762
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000543426.5; ENST00000528467.1; ENST00000546141.5; ENST00000228682.7
External Link RMBase: m6A_site_195059
mod ID: M6ASITE013587 Click to Show/Hide the Full List
mod site chr12:57471598-57471599:+ [5]
Sequence ACATATGGACCTGGCTTTGGACCCAACTTGCCCAATCACAA
Motif Score 3.622404762
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000228682.7; ENST00000528467.1; ENST00000543426.5; ENST00000546141.5
External Link RMBase: m6A_site_195060
mod ID: M6ASITE013588 Click to Show/Hide the Full List
mod site chr12:57471762-57471763:+ [9]
Sequence TCTCAAAGTGGGAGGCACAAACCCCAGCTGTGGTCATCCTG
Motif Score 2.185083333
Cell/Tissue List HeLa; U2OS; A549
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000543426.5; ENST00000546141.5; ENST00000528467.1; ENST00000228682.7
External Link RMBase: m6A_site_195061
mod ID: M6ASITE013589 Click to Show/Hide the Full List
mod site chr12:57471832-57471833:+ [9]
Sequence TTGTACCCTCCTCCCGAAGGACAGGTATGTAACCCCCTGGA
Motif Score 3.643047619
Cell/Tissue List HeLa; A549; U2OS; H1A; H1B; hESCs; GSC-11; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000546141.5; ENST00000528467.1; ENST00000228682.7; ENST00000543426.5
External Link RMBase: m6A_site_195062
mod ID: M6ASITE013590 Click to Show/Hide the Full List
mod site chr12:57471852-57471853:+ [9]
Sequence ACAGGTATGTAACCCCCTGGACTCTCTTGATCTTGACAACA
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; U2OS; H1A; H1B; hESCs; GSC-11; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000546141.5; ENST00000228682.7; ENST00000543426.5; ENST00000528467.1
External Link RMBase: m6A_site_195063
mod ID: M6ASITE013591 Click to Show/Hide the Full List
mod site chr12:57471882-57471883:+ [9]
Sequence TCTTGACAACACTCAGCTGGACTTTGTGGCTATTCTGGATG
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; H1A; H1B; hESCs; GSC-11; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000228682.7; ENST00000543426.5; ENST00000528467.1; ENST00000546141.5
External Link RMBase: m6A_site_195064
mod ID: M6ASITE013592 Click to Show/Hide the Full List
mod site chr12:57471955-57471956:+ [8]
Sequence GATCAGCGGGGCAGCTCTGGACATACCCCACCTCCCTCTGG
Motif Score 3.643047619
Cell/Tissue List HEK293T; A549; H1A; H1B; GSC-11; TREX; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000228682.7; ENST00000543426.5; ENST00000528467.1; ENST00000546141.5
External Link RMBase: m6A_site_195065
mod ID: M6ASITE013593 Click to Show/Hide the Full List
mod site chr12:57472034-57472035:+ [8]
Sequence TGAGATCCCTACCTGGGGAAACAGAATTCCTCAACTCTAGT
Motif Score 2.20572619
Cell/Tissue List A549; H1B; GSC-11
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000543426.5; ENST00000228682.7; ENST00000528467.1; ENST00000546141.5
External Link RMBase: m6A_site_195066