General Information of the m6A Target Gene (ID: M6ATAR00401)
Target Name Suppressor of cytokine signaling 2 (SOCS2)
Synonyms
SOCS-2; Cytokine-inducible SH2 protein 2; CIS-2; STAT-induced STAT inhibitor 2; SSI-2; CIS2; SSI2; STATI2
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Gene Name SOCS2
Chromosomal Location 12q
Function
SOCS family proteins form part of a classical negative feedback system that regulates cytokine signal transduction. SOCS2 appears to be a negative regulator in the growth hormone/IGF1 signaling pathway. Probable substrate recognition component of a SCF-like ECS (Elongin BC-CUL2/5-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
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Gene ID 8835
Uniprot ID
SOCS2_HUMAN
HGNC ID
HGNC:19382
KEGG ID
hsa:8835
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
SOCS2 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
YTH domain-containing family protein 2 (YTHDF2) [READER]
Representative RNA-seq result indicating the expression of this target gene regulated by YTHDF2
Cell Line Human umbilical cord blood CD34+ cells Homo sapiens
Treatment: YTHDF2 knockdown UCB CD34+ cells
Control: Wild type UCB CD34+ cells
GSE107956
Regulation
logFC: 9.71E-01
p-value: 1.71E-04
More Results Click to View More RNA-seq Results
Representative RIP-seq result supporting the interaction between SOCS2 and the regulator
Cell Line Hela Homo sapiens
Regulation logFC: 1.81E+00 GSE49339
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary METTL3 is frequently up-regulated in human HCC and contributes to HCC progression. METTL3 represses Suppressor of cytokine signaling 2 (SOCS2) expression in HCC through an m6A-YTHDF2-dependent mechanism.
Target Regulation Down regulation
Responsed Disease Liver cancer ICD-11: 2C12
Cell Process Cells proliferation
Cells migration
Cells invasion
RNA degradation (hsa03018)
In-vitro Model Hep-G2 Hepatoblastoma Homo sapiens CVCL_0027
Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
MHCC97-L Adult hepatocellular carcinoma Homo sapiens CVCL_4973
In-vivo Model For the subcutaneous implantation model, 2 × 106 METTL3 stable knockdown Huh-7 cells or METTL3 overexpression MHCC97L cells were injected subcutaneously into BABL/cAnN-nude mice. For orthotopic implantation, wild-type and METTL3 knockout Huh-7 cells were luciferase labelled, and 2 × 106 cells were then injected orthotopically into the left liver lobe of nude mice.
Methyltransferase-like 3 (METTL3) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by METTL3
Cell Line ARPE-19 cell line Homo sapiens
Treatment: shMETTL3 ARPE-19 cells
Control: shControl ARPE-19 cells
GSE202017
Regulation
logFC: 8.91E-01
p-value: 2.94E-04
More Results Click to View More RNA-seq Results
In total 5 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [2]
Response Summary MiR-302a was identified to target METTL3, which could inhibit Suppressor of cytokine signaling 2 (SOCS2) expression via m6A modification in glioma.
Target Regulation Down regulation
Responsed Disease Glioma ICD-11: 2A00.0
Pathway Response Transcriptional misregulation in cancer hsa05202
Cell Process RNA stability
In-vitro Model LN-229 Glioblastoma Homo sapiens CVCL_0393
LN-18 Glioblastoma Homo sapiens CVCL_0392
HEB (human normal glial cell line HEB were obtained from Tongpai (Shanghai) biotechnology co., LTD (Shanghai, China))
In-vivo Model Mice were subcutaneously injected with 2.5 × 106 U251 cells stably infected with OE-NC, OE-JMJD1C, OE-NC and sh-NC, OE-JMJD1C and sh-NC or OE-JMJD1C and sh-SOCS2 (n = 10 in each group) in 0.1 ml PBS.
Experiment 2 Reporting the m6A Methylation Regulator of This Target Gene [3]
Response Summary METTL3-KO in gastric cancer cells resulted in the suppression of cell proliferation by inducing Suppressor of cytokine signaling 2 (SOCS2), suggesting a potential role of elevated METTL3 expression in gastric cancer progression.
Target Regulation Down regulation
Responsed Disease Gastric cancer ICD-11: 2B72
In-vitro Model AGS Gastric adenocarcinoma Homo sapiens CVCL_0139
Experiment 3 Reporting the m6A Methylation Regulator of This Target Gene [4]
Response Summary An increased level of METTL3 may maintain the tumorigenicity of colon cancer cells by suppressing Suppressor of cytokine signaling 2 (SOCS2).
Target Regulation Down regulation
Responsed Disease Colon cancer ICD-11: 2B90
Cell Process Cell proliferation
In-vitro Model SW480 Colon adenocarcinoma Homo sapiens CVCL_0546
Experiment 4 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary METTL3 is frequently up-regulated in human HCC and contributes to HCC progression. METTL3 represses Suppressor of cytokine signaling 2 (SOCS2) expression in HCC through an m6A-YTHDF2-dependent mechanism.
Target Regulation Down regulation
Responsed Disease Liver cancer ICD-11: 2C12
Cell Process Cells proliferation
Cells migration
Cells invasion
RNA degradation (hsa03018)
In-vitro Model Hep-G2 Hepatoblastoma Homo sapiens CVCL_0027
Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
MHCC97-L Adult hepatocellular carcinoma Homo sapiens CVCL_4973
In-vivo Model For the subcutaneous implantation model, 2 × 106 METTL3 stable knockdown Huh-7 cells or METTL3 overexpression MHCC97L cells were injected subcutaneously into BABL/cAnN-nude mice. For orthotopic implantation, wild-type and METTL3 knockout Huh-7 cells were luciferase labelled, and 2 × 106 cells were then injected orthotopically into the left liver lobe of nude mice.
Experiment 5 Reporting the m6A Methylation Regulator of This Target Gene [5]
Response Summary METTL3 knock-down experiment revealed that expressions of SOCS family members SOCS1, Suppressor of cytokine signaling 2 (SOCS2), SOCS4, SOCS5, and SOCS6 were increased after METTL3 knock-down. It indicated that METTL3 is involved in the development of Graves' disease (GD) by inducing mRNA m6A methylation modification of SOCS family members.
Target Regulation Down regulation
Responsed Disease Graves disease ICD-11: 5A02.0
In-vitro Model PBMCs (Human peripheral blood mononuclear cells (PBMCs) are isolated from peripheral blood and identified as any blood cell with a round nucleus)
Brain cancer [ICD-11: 2A00]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [2]
Response Summary MiR-302a was identified to target METTL3, which could inhibit Suppressor of cytokine signaling 2 (SOCS2) expression via m6A modification in glioma.
Responsed Disease Glioma [ICD-11: 2A00.0]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Down regulation
Pathway Response Transcriptional misregulation in cancer hsa05202
Cell Process RNA stability
In-vitro Model LN-229 Glioblastoma Homo sapiens CVCL_0393
LN-18 Glioblastoma Homo sapiens CVCL_0392
HEB (human normal glial cell line HEB were obtained from Tongpai (Shanghai) biotechnology co., LTD (Shanghai, China))
In-vivo Model Mice were subcutaneously injected with 2.5 × 106 U251 cells stably infected with OE-NC, OE-JMJD1C, OE-NC and sh-NC, OE-JMJD1C and sh-NC or OE-JMJD1C and sh-SOCS2 (n = 10 in each group) in 0.1 ml PBS.
Solid tumour/cancer [ICD-11: 2A00-2F9Z]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response []
Response Summary In this review, we discuss the specific roles of m6A "writers", "erasers", and "readers" in normal physiology and how their altered expression promotes tumorigenesis. We also describe the potential of exploiting the aberrant expression of these enzymes for cancer diagnosis, prognosis, and the development of novel therapies. The abnormal expression of m6A regulatory enzymes affects m6A abundance and consequently dysregulates the expression of tumor suppressor genes and oncogenes, including MYC, Suppressor of cytokine signaling 2 (SOCS2), ADAM19, and PTEN.
Responsed Disease Solid tumour/cancer [ICD-11: 2A00-2F9Z]
Gastric cancer [ICD-11: 2B72]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [3]
Response Summary METTL3-KO in gastric cancer cells resulted in the suppression of cell proliferation by inducing Suppressor of cytokine signaling 2 (SOCS2), suggesting a potential role of elevated METTL3 expression in gastric cancer progression.
Responsed Disease Gastric cancer [ICD-11: 2B72]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Down regulation
In-vitro Model AGS Gastric adenocarcinoma Homo sapiens CVCL_0139
Colon cancer [ICD-11: 2B90]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [4]
Response Summary An increased level of METTL3 may maintain the tumorigenicity of colon cancer cells by suppressing Suppressor of cytokine signaling 2 (SOCS2).
Responsed Disease Colon cancer [ICD-11: 2B90]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Down regulation
Cell Process Cell proliferation
In-vitro Model SW480 Colon adenocarcinoma Homo sapiens CVCL_0546
Liver cancer [ICD-11: 2C12]
In total 2 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary METTL3 is frequently up-regulated in human HCC and contributes to HCC progression. METTL3 represses Suppressor of cytokine signaling 2 (SOCS2) expression in HCC through an m6A-YTHDF2-dependent mechanism.
Responsed Disease Liver cancer [ICD-11: 2C12]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Down regulation
Cell Process Cells proliferation
Cells migration
Cells invasion
RNA degradation (hsa03018)
In-vitro Model Hep-G2 Hepatoblastoma Homo sapiens CVCL_0027
Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
MHCC97-L Adult hepatocellular carcinoma Homo sapiens CVCL_4973
In-vivo Model For the subcutaneous implantation model, 2 × 106 METTL3 stable knockdown Huh-7 cells or METTL3 overexpression MHCC97L cells were injected subcutaneously into BABL/cAnN-nude mice. For orthotopic implantation, wild-type and METTL3 knockout Huh-7 cells were luciferase labelled, and 2 × 106 cells were then injected orthotopically into the left liver lobe of nude mice.
Experiment 2 Reporting the m6A-centered Disease Response [1]
Response Summary METTL3 is frequently up-regulated in human HCC and contributes to HCC progression. METTL3 represses Suppressor of cytokine signaling 2 (SOCS2) expression in HCC through an m6A-YTHDF2-dependent mechanism.
Responsed Disease Liver cancer [ICD-11: 2C12]
Target Regulator YTH domain-containing family protein 2 (YTHDF2) READER
Target Regulation Down regulation
Cell Process Cells proliferation
Cells migration
Cells invasion
RNA degradation (hsa03018)
In-vitro Model Hep-G2 Hepatoblastoma Homo sapiens CVCL_0027
Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
MHCC97-L Adult hepatocellular carcinoma Homo sapiens CVCL_4973
In-vivo Model For the subcutaneous implantation model, 2 × 106 METTL3 stable knockdown Huh-7 cells or METTL3 overexpression MHCC97L cells were injected subcutaneously into BABL/cAnN-nude mice. For orthotopic implantation, wild-type and METTL3 knockout Huh-7 cells were luciferase labelled, and 2 × 106 cells were then injected orthotopically into the left liver lobe of nude mice.
Thyrotoxicosis [ICD-11: 5A02]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [5]
Response Summary METTL3 knock-down experiment revealed that expressions of SOCS family members SOCS1, Suppressor of cytokine signaling 2 (SOCS2), SOCS4, SOCS5, and SOCS6 were increased after METTL3 knock-down. It indicated that METTL3 is involved in the development of Graves' disease (GD) by inducing mRNA m6A methylation modification of SOCS family members.
Responsed Disease Graves disease [ICD-11: 5A02.0]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Down regulation
In-vitro Model PBMCs (Human peripheral blood mononuclear cells (PBMCs) are isolated from peripheral blood and identified as any blood cell with a round nucleus)
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
RNA modification
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00070
Epigenetic Regulator tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 (NSUN6)
Regulated Target Methyltransferase-like protein 3 (METTL3)
Crosstalk relationship m5C → m6A
Disease Colon cancer
Histone modification
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT03072
Epigenetic Regulator Probable JmjC domain-containing histone demethylation protein 2C (JMJD1C)
Regulated Target Histone H3 lysine 9 monomethylation (H3K9me1)
Crosstalk relationship Histone modification → m6A
Disease Brain cancer
Crosstalk ID: M6ACROT03659
Epigenetic Regulator Histone-lysine N-methyltransferase EZH2 (EZH2)
Regulated Target Histone H3 lysine 27 trimethylation (H3K27me3)
Crosstalk relationship Histone modification → m6A
Disease Gastric cancer
Non-coding RNA
m6A Regulator: Wilms tumor 1-associating protein (WTAP)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05155
Epigenetic Regulator AC115619-22aa
Regulated Target Pre-mRNA-splicing regulator WTAP (WTAP)
Crosstalk relationship ncRNA → m6A
Disease Liver cancer
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05360
Epigenetic Regulator hsa-miR-302a
Regulated Target Methyltransferase-like protein 3 (METTL3)
Crosstalk relationship ncRNA → m6A
Disease Brain cancer
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00401)
Suppressor of cytokine signaling 2 (SOCS2)
5-methylcytidine (m5C)
In total 5 m6A sequence/site(s) in this target gene
mod ID: M5CSITE000085 Click to Show/Hide the Full List
mod site chr12:93570424-93570425:+
Sequence TCAAGGGGACCGCCTCCGGTCCCCGGCCGTGGGCACCGGGA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000340600.6; ENST00000549206.5
External Link RMBase: m5C_site_10707
mod ID: M5CSITE000086 Click to Show/Hide the Full List
mod site chr12:93570425-93570426:+
Sequence CAAGGGGACCGCCTCCGGTCCCCGGCCGTGGGCACCGGGAC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000340600.6; ENST00000549206.5
External Link RMBase: m5C_site_10708
mod ID: M5CSITE000087 Click to Show/Hide the Full List
mod site chr12:93570426-93570427:+
Sequence AAGGGGACCGCCTCCGGTCCCCGGCCGTGGGCACCGGGACG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000340600.6; ENST00000549206.5
External Link RMBase: m5C_site_10709
mod ID: M5CSITE000088 Click to Show/Hide the Full List
mod site chr12:93570427-93570428:+
Sequence AGGGGACCGCCTCCGGTCCCCGGCCGTGGGCACCGGGACGA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000340600.6; ENST00000549206.5
External Link RMBase: m5C_site_10710
mod ID: M5CSITE000089 Click to Show/Hide the Full List
mod site chr12:93570619-93570620:+
Sequence CCCCGTGGCAGGCCAAGGGCCAAGGATCGCTATCCTTCCCT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000549206.5; ENST00000340600.6
External Link RMBase: m5C_site_10711
N6-methyladenosine (m6A)
In total 49 m6A sequence/site(s) in this target gene
mod ID: M6ASITE014545 Click to Show/Hide the Full List
mod site chr12:93570141-93570142:+ [8]
Sequence CCCTGCAGGGAATGGCAGAGACACTCTCCGGACTGAGGGAA
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; endometrial; MM6
Seq Type List m6A-seq
Transcript ID List ENST00000340600.6
External Link RMBase: m6A_site_202237
mod ID: M6ASITE014546 Click to Show/Hide the Full List
mod site chr12:93570152-93570153:+ [8]
Sequence ATGGCAGAGACACTCTCCGGACTGAGGGAACCGAGGCCAGT
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; endometrial; MM6
Seq Type List m6A-seq
Transcript ID List ENST00000340600.6
External Link RMBase: m6A_site_202238
mod ID: M6ASITE014547 Click to Show/Hide the Full List
mod site chr12:93570161-93570162:+ [8]
Sequence ACACTCTCCGGACTGAGGGAACCGAGGCCAGTCACCAAGCC
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; endometrial; MM6
Seq Type List m6A-seq
Transcript ID List ENST00000340600.6
External Link RMBase: m6A_site_202239
mod ID: M6ASITE014548 Click to Show/Hide the Full List
mod site chr12:93570412-93570413:+ [8]
Sequence TCCAGGACCTGATCAAGGGGACCGCCTCCGGTCCCCGGCCG
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000549206.5; ENST00000340600.6
External Link RMBase: m6A_site_202240
mod ID: M6ASITE014549 Click to Show/Hide the Full List
mod site chr12:93570642-93570643:+ [8]
Sequence GGATCGCTATCCTTCCCTGAACCCGGGCGCTCAGCTGGCCC
Motif Score 2.930744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000340600.6; ENST00000549206.5
External Link RMBase: m6A_site_202241
mod ID: M6ASITE014550 Click to Show/Hide the Full List
mod site chr12:93571029-93571030:+ [8]
Sequence GCGCACTCGCTGCTCCTGGGACCGACGTTTAACTCTTGCCA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq
Transcript ID List ENST00000536696.6; ENST00000549206.5; ENST00000340600.6
External Link RMBase: m6A_site_202242
mod ID: M6ASITE014551 Click to Show/Hide the Full List
mod site chr12:93571144-93571145:+ [8]
Sequence CCTCACCGCGTGGCCCGCGGACAGTGCGCGCCGGGGTCCCG
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; AML
Seq Type List m6A-seq; miCLIP
Transcript ID List ENST00000549206.5; ENST00000340600.6; ENST00000536696.6
External Link RMBase: m6A_site_202243
mod ID: M6ASITE014552 Click to Show/Hide the Full List
mod site chr12:93571357-93571358:+ [8]
Sequence CCGGGGAAGAGAGAGTCCGAACCGCGGCTCTGCCCCGCGGC
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq
Transcript ID List ENST00000536696.6; ENST00000549206.5; ENST00000340600.6; ENST00000548091.5
External Link RMBase: m6A_site_202245
mod ID: M6ASITE014553 Click to Show/Hide the Full List
mod site chr12:93571457-93571458:+ [8]
Sequence CTTTTTTTTATTTCCCCTAAACTGCCATTCAAATTAATAAT
Motif Score 2.627720238
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000536696.6; ENST00000548091.5; ENST00000549206.5; ENST00000340600.6; ENST00000549122.5
External Link RMBase: m6A_site_202246
mod ID: M6ASITE014554 Click to Show/Hide the Full List
mod site chr12:93571590-93571591:+ [8]
Sequence AGGGTCGCAGCCGGAGGGAAACCCGGCAGCAGTCCGAGAGT
Motif Score 2.185083333
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000549122.5; ENST00000548091.5; ENST00000536696.6; ENST00000549206.5; ENST00000340600.6
External Link RMBase: m6A_site_202247
mod ID: M6ASITE014555 Click to Show/Hide the Full List
mod site chr12:93571706-93571707:+ [8]
Sequence GTGTGCCCTCTGCGCACGGAACTCCGACCGCCGCCTCCGAG
Motif Score 3.373380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000549122.5; ENST00000340600.6; ENST00000536696.6; ENST00000548537.1; ENST00000622746.4; ENST00000548091.5; ENST00000549206.5
External Link RMBase: m6A_site_202250
mod ID: M6ASITE014556 Click to Show/Hide the Full List
mod site chr12:93572047-93572048:+ [8]
Sequence CAGCGCCCGCGGCGGCGAGAACCACCGCAGCCATCCTGGTC
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq
Transcript ID List ENST00000548091.5; ENST00000548537.1; ENST00000549206.5; ENST00000549122.5; ENST00000622746.4; ENST00000536696.6; ENST00000340600.6; ENST00000549887.1
External Link RMBase: m6A_site_202251
mod ID: M6ASITE014557 Click to Show/Hide the Full List
mod site chr12:93572225-93572226:+ [8]
Sequence GCAGCGCTTTAGGGCGGAGAACCAAGTTTGTGTGGGTGCTT
Motif Score 2.930744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000549887.1; ENST00000548537.1; ENST00000549122.5; ENST00000536696.6; ENST00000549206.5; ENST00000622746.4; ENST00000548091.5; ENST00000340600.6; ENST00000547229.1
External Link RMBase: m6A_site_202252
mod ID: M6ASITE014558 Click to Show/Hide the Full List
mod site chr12:93572714-93572715:+ [8]
Sequence GGTGACCGCGGCTGCGAGGGACTTTGTCATCCGTCCTCCAG
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; A549; H1A; hESCs; MM6; GSC-11; HEK293T; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000549206.5; ENST00000549122.5; ENST00000551556.2; ENST00000549887.1; ENST00000547229.1; ENST00000622746.4; ENST00000340600.6; ENST00000536696.6; ENST00000548537.1; ENST00000548091.5
External Link RMBase: m6A_site_202253
mod ID: M6ASITE014559 Click to Show/Hide the Full List
mod site chr12:93572784-93572785:+ [8]
Sequence TCTCTCTGCCACCATTTCGGACACCCCGCAGGGACTCGTTT
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; HEK293T; A549; H1B; H1A; hESCs; GM12878; MM6; Jurkat; CD4T; GSC-11; HEK293A-TOA; MSC; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000622746.4; ENST00000548537.1; ENST00000549887.1; ENST00000340600.6; ENST00000549122.5; ENST00000551556.2; ENST00000547229.1; ENST00000549206.5; ENST00000536696.6; ENST00000548091.5
External Link RMBase: m6A_site_202254
mod ID: M6ASITE014560 Click to Show/Hide the Full List
mod site chr12:93572797-93572798:+ [8]
Sequence ATTTCGGACACCCCGCAGGGACTCGTTTTGGGATTCGCACT
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; HEK293T; A549; H1B; H1A; hESCs; GM12878; MM6; Jurkat; CD4T; GSC-11; HEK293A-TOA; MSC; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000548537.1; ENST00000340600.6; ENST00000622746.4; ENST00000549122.5; ENST00000549206.5; ENST00000551556.2; ENST00000536696.6; ENST00000549887.1; ENST00000547229.1; ENST00000548091.5
External Link RMBase: m6A_site_202255
mod ID: M6ASITE014561 Click to Show/Hide the Full List
mod site chr12:93572838-93572839:+ [8]
Sequence GACTTCAAGGAAGGACGCGAACCCTTCTCTGACCCCAGCTC
Motif Score 2.930744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; H1B; H1A; hESCs; GM12878; MM6; Jurkat; CD4T; GSC-11; HEK293A-TOA; TREX; MSC; endometrial; NB4; AML
Seq Type List m6A-seq; MeRIP-seq; miCLIP
Transcript ID List ENST00000551556.2; ENST00000548537.1; ENST00000536696.6; ENST00000549122.5; ENST00000548091.5; ENST00000547229.1; ENST00000622746.4; ENST00000549206.5; ENST00000549887.1; ENST00000340600.6
External Link RMBase: m6A_site_202256
mod ID: M6ASITE014562 Click to Show/Hide the Full List
mod site chr12:93572960-93572961:+ [8]
Sequence GGACGCGGAGCCAGTGGGGGACCGCGGGGTCGGCGGAGGAG
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; H1A; GM12878; MM6; Jurkat; CD4T; GSC-11; HEK293A-TOA; TREX; endometrial; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000549887.1; ENST00000551556.2; ENST00000548091.5; ENST00000536696.6; ENST00000549122.5; ENST00000549206.5; ENST00000622746.4; ENST00000548537.1; ENST00000340600.6
External Link RMBase: m6A_site_202257
mod ID: M6ASITE014563 Click to Show/Hide the Full List
mod site chr12:93573032-93573033:+ [8]
Sequence CCCTGCGGGAGCTCGGTCAGACAGGTAGGGAGCCGATCGGC
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; H1A; MM6; Jurkat; GSC-11; HEK293A-TOA; TREX; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000551556.2; ENST00000549122.5; ENST00000536696.6; ENST00000549206.5; ENST00000549887.1; ENST00000622746.4; ENST00000340600.6; ENST00000548091.5; ENST00000548537.1
External Link RMBase: m6A_site_202258
mod ID: M6ASITE014564 Click to Show/Hide the Full List
mod site chr12:93573158-93573159:+ [8]
Sequence ACGTCCCTTGCTTCCAAGGGACCGCGGAGAGCACGCTCGCA
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HEK293T
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000548091.5; ENST00000340600.6; ENST00000536696.6; ENST00000549206.5; ENST00000548537.1; ENST00000551556.2; ENST00000622746.4; ENST00000549887.1; ENST00000549122.5
External Link RMBase: m6A_site_202259
mod ID: M6ASITE014565 Click to Show/Hide the Full List
mod site chr12:93573485-93573486:+ [9]
Sequence CTTGGCGGCCAAGTTCAGGGACTGACACTGCCGCGAGGGCG
Motif Score 4.065041667
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000536696.6; ENST00000340600.6; ENST00000622746.4; ENST00000549206.5; ENST00000549887.1; ENST00000548537.1; ENST00000548091.5; ENST00000551556.2; ENST00000549122.5
External Link RMBase: m6A_site_202260
mod ID: M6ASITE014566 Click to Show/Hide the Full List
mod site chr12:93574040-93574041:+ [8]
Sequence GAGTTTAGGGAAGATTGTAAACTTGAAGTAGTAATTATCAC
Motif Score 2.627720238
Cell/Tissue List HeLa; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000340600.6; ENST00000551556.2; ENST00000549887.1; ENST00000548091.5; ENST00000536696.6; ENST00000549122.5; ENST00000622746.4; ENST00000548537.1; ENST00000549206.5
External Link RMBase: m6A_site_202261
mod ID: M6ASITE014567 Click to Show/Hide the Full List
mod site chr12:93574708-93574709:+ [8]
Sequence TCTTTTCTTTTTCTTTTTGAACAAAAACCCCAGGATGGTAC
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; HEK293T; A549; hESCs; fibroblasts; GM12878; MM6; Huh7; MSC; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000536696.6; ENST00000622746.4; ENST00000548091.5; ENST00000549887.1; ENST00000549122.5; ENST00000551556.2; ENST00000549206.5; ENST00000340600.6; ENST00000548537.1
External Link RMBase: m6A_site_202262
mod ID: M6ASITE014568 Click to Show/Hide the Full List
mod site chr12:93574714-93574715:+ [8]
Sequence CTTTTTCTTTTTGAACAAAAACCCCAGGATGGTACTGGGGA
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HEK293T; A549; hESCs; fibroblasts; GM12878; MM6; Huh7; MSC; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000548537.1; ENST00000536696.6; ENST00000340600.6; ENST00000549122.5; ENST00000548091.5; ENST00000549206.5; ENST00000549887.1; ENST00000551556.2; ENST00000622746.4
External Link RMBase: m6A_site_202263
mod ID: M6ASITE014569 Click to Show/Hide the Full List
mod site chr12:93574741-93574742:+ [10]
Sequence GATGGTACTGGGGAAGTATGACTGTTAATGAAGCCAAAGAG
Motif Score 3.28175
Cell/Tissue List AML
Seq Type List miCLIP
Transcript ID List ENST00000549887.1; ENST00000548537.1; ENST00000549122.5; ENST00000548091.5; ENST00000549206.5; ENST00000536696.6; ENST00000622746.4; ENST00000551556.2; ENST00000340600.6
External Link RMBase: m6A_site_202264
mod ID: M6ASITE014570 Click to Show/Hide the Full List
mod site chr12:93574786-93574787:+ [8]
Sequence TAAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGC
Motif Score 3.373380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000622746.4; ENST00000536696.6; ENST00000340600.6; ENST00000549122.5; ENST00000549887.1; ENST00000551556.2; ENST00000548091.5; ENST00000549206.5; ENST00000548537.1
External Link RMBase: m6A_site_202265
mod ID: M6ASITE014571 Click to Show/Hide the Full List
mod site chr12:93574817-93574818:+ [8]
Sequence TAGAGATAGCTCGCATTCAGACTACCTACTAACAATATCTG
Motif Score 3.319380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000536696.6; ENST00000340600.6; ENST00000549887.1; ENST00000622746.4; ENST00000551556.2; ENST00000548091.5; ENST00000549206.5; ENST00000549122.5; ENST00000548537.1
External Link RMBase: m6A_site_202266
mod ID: M6ASITE014572 Click to Show/Hide the Full List
mod site chr12:93574843-93574844:+ [8]
Sequence TACTAACAATATCTGTTAAAACATCAGCTGGACCAACTAAT
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000549122.5; ENST00000548091.5; ENST00000536696.6; ENST00000549887.1; ENST00000340600.6; ENST00000548537.1; ENST00000549206.5; ENST00000551556.2; ENST00000622746.4
External Link RMBase: m6A_site_202267
mod ID: M6ASITE014573 Click to Show/Hide the Full List
mod site chr12:93574854-93574855:+ [8]
Sequence TCTGTTAAAACATCAGCTGGACCAACTAATCTTCGAATCGA
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000548537.1; ENST00000549206.5; ENST00000548091.5; ENST00000536696.6; ENST00000551556.2; ENST00000549887.1; ENST00000549122.5; ENST00000622746.4; ENST00000340600.6
External Link RMBase: m6A_site_202268
mod ID: M6ASITE014574 Click to Show/Hide the Full List
mod site chr12:93574901-93574902:+ [8]
Sequence AGACGGAAAATTCAGATTGGACTCTATCATATGTGTCAAAT
Motif Score 4.065041667
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESCs; fibroblasts; GM12878; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000536696.6; ENST00000549887.1; ENST00000549206.5; ENST00000340600.6; ENST00000548091.5; ENST00000551556.2; ENST00000549122.5; ENST00000548537.1; ENST00000622746.4
External Link RMBase: m6A_site_202269
mod ID: M6ASITE014575 Click to Show/Hide the Full List
mod site chr12:93574932-93574933:+ [8]
Sequence TGTGTCAAATCCAAGCTTAAACAATTTGACAGTGTGGTTCA
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESCs; fibroblasts; GM12878; MM6; Huh7; Jurkat; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000551556.2; ENST00000549887.1; ENST00000622746.4; ENST00000549122.5; ENST00000536696.6; ENST00000549206.5; ENST00000548537.1; ENST00000340600.6; ENST00000548091.5
External Link RMBase: m6A_site_202270
mod ID: M6ASITE014576 Click to Show/Hide the Full List
mod site chr12:93574993-93574994:+ [8]
Sequence AGATGTGCAAGGATAAGCGGACAGGTCCAGAAGCCCCCCGG
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESCs; fibroblasts; GM12878; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000549122.5; ENST00000551556.2; ENST00000548091.5; ENST00000549887.1; ENST00000340600.6; ENST00000536696.6; ENST00000549206.5; ENST00000551883.1; ENST00000548537.1; ENST00000622746.4
External Link RMBase: m6A_site_202271
mod ID: M6ASITE014577 Click to Show/Hide the Full List
mod site chr12:93575043-93575044:+ [8]
Sequence GTTCACCTTTATCTGACCAAACCGCTCTACACGTCAGCACC
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESCs; fibroblasts; GM12878; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000551883.1; ENST00000549122.5; ENST00000340600.6; ENST00000548537.1; ENST00000549206.5; ENST00000551556.2; ENST00000536696.6; ENST00000622746.4; ENST00000549887.1
External Link RMBase: m6A_site_202272
mod ID: M6ASITE014578 Click to Show/Hide the Full List
mod site chr12:93575051-93575052:+ [11]
Sequence TTATCTGACCAAACCGCTCTACACGTCAGCACCATCTCTGC
Motif Score 2.078666667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000549206.5; ENST00000548537.1; ENST00000549122.5; ENST00000549887.1; ENST00000622746.4; ENST00000551556.2; ENST00000536696.6; ENST00000551883.1; ENST00000340600.6
External Link RMBase: m6A_site_202273
mod ID: M6ASITE014579 Click to Show/Hide the Full List
mod site chr12:93575096-93575097:+ [10]
Sequence TCTCTGTAGGCTCACCATTAACAAATGTACCGGTGCCATCT
Motif Score 2.168095238
Cell/Tissue List AML
Seq Type List miCLIP
Transcript ID List ENST00000551556.2; ENST00000551883.1; ENST00000340600.6; ENST00000536696.6; ENST00000622746.4; ENST00000549510.1; ENST00000549206.5; ENST00000549122.5; ENST00000548537.1
External Link RMBase: m6A_site_202274
mod ID: M6ASITE014580 Click to Show/Hide the Full List
mod site chr12:93575121-93575122:+ [8]
Sequence TGTACCGGTGCCATCTGGGGACTGCCTTTACCAACAAGACT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; hESCs; fibroblasts; GM12878; H1299; Huh7; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000340600.6; ENST00000622746.4; ENST00000548537.1; ENST00000551883.1; ENST00000536696.6; ENST00000549122.5; ENST00000551556.2; ENST00000549206.5; ENST00000549510.1
External Link RMBase: m6A_site_202275
mod ID: M6ASITE014581 Click to Show/Hide the Full List
mod site chr12:93575139-93575140:+ [8]
Sequence GGACTGCCTTTACCAACAAGACTAAAAGATTACTTGGAAGA
Motif Score 3.319380952
Cell/Tissue List HeLa; HEK293T; A549; hESCs; fibroblasts; GM12878; H1299; Huh7; iSLK; MSC; TIME; TREX; AML
Seq Type List m6A-seq; MeRIP-seq; DART-seq; miCLIP
Transcript ID List ENST00000551883.1; ENST00000622746.4; ENST00000549122.5; ENST00000549510.1; ENST00000548537.1; ENST00000536696.6; ENST00000551556.2; ENST00000549206.5; ENST00000340600.6
External Link RMBase: m6A_site_202276
mod ID: M6ASITE014582 Click to Show/Hide the Full List
mod site chr12:93575197-93575198:+ [8]
Sequence AAATGTTTCTCTTTTTTTAAACATGTCTCACATAGAGTATC
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; A549; hESCs; fibroblasts; GM12878; LCLs; H1299; Huh7; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000551883.1; ENST00000549510.1; ENST00000340600.6; ENST00000549206.5; ENST00000549122.5; ENST00000548537.1; ENST00000622746.4; ENST00000551556.2
External Link RMBase: m6A_site_202277
mod ID: M6ASITE014583 Click to Show/Hide the Full List
mod site chr12:93575206-93575207:+ [11]
Sequence TCTTTTTTTAAACATGTCTCACATAGAGTATCTCCGAATGC
Motif Score 2.047297619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000551556.2; ENST00000549206.5; ENST00000548537.1; ENST00000549510.1; ENST00000340600.6; ENST00000549122.5; ENST00000551883.1; ENST00000622746.4
External Link RMBase: m6A_site_202278
mod ID: M6ASITE014584 Click to Show/Hide the Full List
mod site chr12:93575243-93575244:+ [8]
Sequence ATGCAGCTATGTAAAAGAGAACCAAAACTTGAGTGCTCTGG
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T; A549; LCLs; Huh7; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000549510.1; ENST00000622746.4; ENST00000548537.1; ENST00000551883.1; ENST00000549122.5; ENST00000340600.6; ENST00000549206.5; ENST00000551556.2
External Link RMBase: m6A_site_202279
mod ID: M6ASITE014585 Click to Show/Hide the Full List
mod site chr12:93575249-93575250:+ [8]
Sequence CTATGTAAAAGAGAACCAAAACTTGAGTGCTCTGGATAACT
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; A549; LCLs; Huh7; iSLK; AML
Seq Type List m6A-seq; MeRIP-seq; DART-seq; miCLIP
Transcript ID List ENST00000622746.4; ENST00000549206.5; ENST00000549510.1; ENST00000551883.1; ENST00000551556.2; ENST00000549122.5; ENST00000548537.1; ENST00000340600.6
External Link RMBase: m6A_site_202280
mod ID: M6ASITE014586 Click to Show/Hide the Full List
mod site chr12:93575290-93575291:+ [8]
Sequence ATATGGAATGCTTTCTAAGAACAGCTGAAGCTAATCTAATT
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; Huh7; AML
Seq Type List m6A-seq; MeRIP-seq; miCLIP
Transcript ID List ENST00000549206.5; ENST00000551883.1; ENST00000549122.5; ENST00000622746.4; ENST00000549510.1; ENST00000340600.6; ENST00000551556.2; ENST00000548537.1
External Link RMBase: m6A_site_202281
mod ID: M6ASITE014587 Click to Show/Hide the Full List
mod site chr12:93575403-93575404:+ [8]
Sequence CCTTCCTAAGGCTGACCAAGACCTGTTGATCCTTTTAGATT
Motif Score 2.876744048
Cell/Tissue List HeLa; HEK293T; AML
Seq Type List m6A-seq; MeRIP-seq; miCLIP
Transcript ID List ENST00000548537.1; ENST00000551556.2; ENST00000549122.5; ENST00000549206.5; ENST00000551883.1; ENST00000549510.1; ENST00000622746.4; ENST00000340600.6
External Link RMBase: m6A_site_202282
mod ID: M6ASITE014588 Click to Show/Hide the Full List
mod site chr12:93575535-93575536:+ [8]
Sequence GCTCCAGTAGGAGAGAAAGAACTCCTCATAGGAATACTGAA
Motif Score 3.373380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000549510.1; ENST00000551556.2; ENST00000548537.1; ENST00000622746.4; ENST00000549122.5; ENST00000340600.6; ENST00000549206.5; ENST00000551883.1
External Link RMBase: m6A_site_202283
mod ID: M6ASITE014589 Click to Show/Hide the Full List
mod site chr12:93575569-93575570:+ [8]
Sequence TACTGAAGAAGTGGGAAGGAACCAAGCTGACACAGGCCTCA
Motif Score 2.930744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000549206.5; ENST00000551556.2; ENST00000548537.1; ENST00000549510.1; ENST00000340600.6; ENST00000549122.5; ENST00000622746.4; ENST00000551883.1
External Link RMBase: m6A_site_202284
mod ID: M6ASITE014590 Click to Show/Hide the Full List
mod site chr12:93575840-93575841:+ [8]
Sequence TTATTTCAGAAATATTTCAAACTGGTGCAAATGGAAAAGAC
Motif Score 2.627720238
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000549122.5; ENST00000551556.2; ENST00000622746.4; ENST00000340600.6; ENST00000549206.5; ENST00000548537.1; ENST00000549510.1; ENST00000551883.1
External Link RMBase: m6A_site_202285
mod ID: M6ASITE014591 Click to Show/Hide the Full List
mod site chr12:93575859-93575860:+ [8]
Sequence AACTGGTGCAAATGGAAAAGACTTTCTCTTTTCCTTTAAAG
Motif Score 3.319380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000622746.4; ENST00000551556.2; ENST00000549206.5; ENST00000548537.1; ENST00000340600.6; ENST00000549510.1; ENST00000551883.1; ENST00000549122.5
External Link RMBase: m6A_site_202286
mod ID: M6ASITE014592 Click to Show/Hide the Full List
mod site chr12:93575886-93575887:+ [8]
Sequence CTTTTCCTTTAAAGCTAAAGACAAGAATATCATGCTATACA
Motif Score 2.897386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000340600.6; ENST00000551556.2; ENST00000548537.1; ENST00000549510.1; ENST00000549122.5; ENST00000622746.4; ENST00000551883.1; ENST00000549206.5
External Link RMBase: m6A_site_202287
mod ID: M6ASITE014593 Click to Show/Hide the Full List
mod site chr12:93575934-93575935:+ [8]
Sequence CTCAATCCCCGTTAATAAAAACCAATGTAGGTATAGGCATT
Motif Score 2.185083333
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000551556.2; ENST00000340600.6; ENST00000622746.4; ENST00000549510.1; ENST00000549122.5; ENST00000551883.1; ENST00000549206.5; ENST00000548537.1
External Link RMBase: m6A_site_202288