General Information of the m6A Target Gene (ID: M6ATAR00271)
Target Name Hepatoma-derived growth factor (HDGF)
Synonyms
HDGF; High mobility group protein 1-like 2; HMG-1L2; HMG1L2
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Gene Name HDGF
Chromosomal Location 1q23.1
Family HDGF family
Function
[Isoform 1]: Acts as a transcriptional repressor. Has mitogenic activity for fibroblasts. Heparin-binding protein. [Isoform 2]: Does not have mitogenic activity for fibroblasts. Does not bind heparin. [Isoform 3]: Has mitogenic activity for fibroblasts. Heparin-binding protein.
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Gene ID 3068
Uniprot ID
HDGF_HUMAN
HGNC ID
HGNC:4856
KEGG ID
hsa:3068
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
HDGF can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
Methyltransferase-like 3 (METTL3) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by METTL3
Cell Line LX2 cell line Homo sapiens
Treatment: shMETTL3 LX2 cells
Control: shLuc LX2 cells
GSE207909
Regulation
logFC: -6.20E-01
p-value: 6.85E-14
More Results Click to View More RNA-seq Results
Representative RIP-seq result supporting the interaction between HDGF and the regulator
Cell Line MDA-MB-231 Homo sapiens
Regulation logFC: 1.03E+00 GSE60213
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary Elevated METTL3 expression promotes tumour angiogenesis and glycolysis in Gastric cancer. P300-mediated H3K27 acetylation activation in the promoter of METTL3 induced METTL3 transcription, which stimulated m6A modification of Hepatoma-derived growth factor (HDGF) mRNA, and the m6A reader IGF2BP3 then directly recognised and bound to the m6A site on HDGF mRNA and enhanced HDGF mRNA stability.
Target Regulation Up regulation
Responsed Disease Gastric cancer ICD-11: 2B72
Pathway Response Glycolysis / Gluconeogenesis hsa00010
Cell Process Glycolysis
In-vitro Model HGC-27 Gastric carcinoma Homo sapiens CVCL_1279
NCI-N87 Gastric tubular adenocarcinoma Homo sapiens CVCL_1603
SGC-7901 Gastric carcinoma Homo sapiens CVCL_0520
In-vivo Model Mice 8 weeks after splenic portal vein injection of BGC823 cells with METTL3 overexpression or vector-transfected cells.
Insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3) [READER]
Representative RNA-seq result indicating the expression of this target gene regulated by IGF2BP3
Cell Line ES-2 cell line Homo sapiens
Treatment: siIGF2BP3 ES-2 cells
Control: siControl ES-2 cells
GSE109604
Regulation
logFC: -6.81E-01
p-value: 1.47E-02
More Results Click to View More RNA-seq Results
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary Elevated METTL3 expression promotes tumour angiogenesis and glycolysis in Gastric cancer. P300-mediated H3K27 acetylation activation in the promoter of METTL3 induced METTL3 transcription, which stimulated m6A modification of Hepatoma-derived growth factor (HDGF) mRNA, and the m6A reader IGF2BP3 then directly recognised and bound to the m6A site on HDGF mRNA and enhanced HDGF mRNA stability.
Target Regulation Up regulation
Responsed Disease Gastric cancer ICD-11: 2B72
Pathway Response Glycolysis / Gluconeogenesis hsa00010
Cell Process Glycolysis
In-vitro Model HGC-27 Gastric carcinoma Homo sapiens CVCL_1279
NCI-N87 Gastric tubular adenocarcinoma Homo sapiens CVCL_1603
SGC-7901 Gastric carcinoma Homo sapiens CVCL_0520
In-vivo Model Mice 8 weeks after splenic portal vein injection of BGC823 cells with METTL3 overexpression or vector-transfected cells.
Gastric cancer [ICD-11: 2B72]
In total 2 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary Elevated METTL3 expression promotes tumour angiogenesis and glycolysis in Gastric cancer. P300-mediated H3K27 acetylation activation in the promoter of METTL3 induced METTL3 transcription, which stimulated m6A modification of Hepatoma-derived growth factor (HDGF) mRNA, and the m6A reader IGF2BP3 then directly recognised and bound to the m6A site on HDGF mRNA and enhanced HDGF mRNA stability.
Responsed Disease Gastric cancer [ICD-11: 2B72]
Target Regulator Insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3) READER
Target Regulation Up regulation
Pathway Response Glycolysis / Gluconeogenesis hsa00010
Cell Process Glycolysis
In-vitro Model HGC-27 Gastric carcinoma Homo sapiens CVCL_1279
NCI-N87 Gastric tubular adenocarcinoma Homo sapiens CVCL_1603
SGC-7901 Gastric carcinoma Homo sapiens CVCL_0520
In-vivo Model Mice 8 weeks after splenic portal vein injection of BGC823 cells with METTL3 overexpression or vector-transfected cells.
Experiment 2 Reporting the m6A-centered Disease Response [1]
Response Summary Elevated METTL3 expression promotes tumour angiogenesis and glycolysis in Gastric cancer. P300-mediated H3K27 acetylation activation in the promoter of METTL3 induced METTL3 transcription, which stimulated m6A modification of Hepatoma-derived growth factor (HDGF) mRNA, and the m6A reader IGF2BP3 then directly recognised and bound to the m6A site on HDGF mRNA and enhanced HDGF mRNA stability.
Responsed Disease Gastric cancer [ICD-11: 2B72]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
Pathway Response Glycolysis / Gluconeogenesis hsa00010
Cell Process Glycolysis
In-vitro Model HGC-27 Gastric carcinoma Homo sapiens CVCL_1279
NCI-N87 Gastric tubular adenocarcinoma Homo sapiens CVCL_1603
SGC-7901 Gastric carcinoma Homo sapiens CVCL_0520
In-vivo Model Mice 8 weeks after splenic portal vein injection of BGC823 cells with METTL3 overexpression or vector-transfected cells.
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
RNA modification
m6A Regulator: ELAV-like protein 1 (ELAVL1)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00073
Epigenetic Regulator Y-box-binding protein 1 (YBX1)
Regulated Target Hepatoma-derived growth factor (HDGF)
Crosstalk relationship m5C → m6A
Disease Bladder cancer
Crosstalk ID: M6ACROT00074
Epigenetic Regulator RNA cytosine C(5)-methyltransferase NSUN2 (NSUN2)
Regulated Target Hepatoma-derived growth factor (HDGF)
Crosstalk relationship m5C → m6A
Disease Bladder cancer
Histone modification
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT03645
Epigenetic Regulator Histone-lysine N-methyltransferase EZH2 (EZH2)
Regulated Target Histone H3 lysine 27 trimethylation (H3K27me3)
Crosstalk relationship Histone modification → m6A
Disease Gastric cancer
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00271)
Hepatoma-derived growth factor (HDGF)
2'-O-Methylation (2'-O-Me)
In total 5 m6A sequence/site(s) in this target gene
mod ID: 2OMSITE000281 Click to Show/Hide the Full List
mod site chr1:156743862-156743863:- [3]
Sequence CCTAGGACTCTCCTAAACGTCCCAAGGAGGCAGAAAACCCT
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000537739.5; ENST00000477306.1; ENST00000465180.5; ENST00000357325.10; ENST00000482651.5; ENST00000471377.5; ENST00000495212.1; ENST00000368206.5; ENST00000368209.9; ENST00000469145.5
External Link RMBase: Nm_site_399
mod ID: 2OMSITE000283 Click to Show/Hide the Full List
mod site chr1:156743864-156743865:- [3]
Sequence TGCCTAGGACTCTCCTAAACGTCCCAAGGAGGCAGAAAACC
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000357325.10; ENST00000495212.1; ENST00000368206.5; ENST00000482651.5; ENST00000469145.5; ENST00000477306.1; ENST00000537739.5; ENST00000471377.5; ENST00000465180.5; ENST00000368209.9
External Link RMBase: Nm_site_401
mod ID: 2OMSITE000279 Click to Show/Hide the Full List
mod site chr1:156742188-156742189:- [3]
Sequence CTTGGGCTCTGATGAAAAATTGCTGACTGTAGCTTTGGAAG
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000368209.9; ENST00000537739.5; ENST00000357325.10
External Link RMBase: Nm_site_397
mod ID: 2OMSITE000280 Click to Show/Hide the Full List
mod site chr1:156742733-156742734:- [3]
Sequence CTGAGACCTGAAGGGTTGACTTTACCCATTTGGGTGGGAGT
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000465180.5; ENST00000537739.5; ENST00000357325.10; ENST00000368209.9
External Link RMBase: Nm_site_398
mod ID: 2OMSITE000282 Click to Show/Hide the Full List
mod site chr1:156743863-156743864:- [3]
Sequence GCCTAGGACTCTCCTAAACGTCCCAAGGAGGCAGAAAACCC
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000477306.1; ENST00000368209.9; ENST00000465180.5; ENST00000357325.10; ENST00000537739.5; ENST00000469145.5; ENST00000471377.5; ENST00000482651.5; ENST00000368206.5; ENST00000495212.1
External Link RMBase: Nm_site_400
5-methylcytidine (m5C)
In total 8 m6A sequence/site(s) in this target gene
mod ID: M5CSITE004198 Click to Show/Hide the Full List
mod site chr1:156742963-156742964:- [4]
Sequence GGGCAGCACAGGAGGGCGGCCTCCTTCTGAGCTCCTGTCCC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000357325.10; ENST00000368209.9; ENST00000465180.5; ENST00000537739.5
External Link RMBase: m5C_site_4010
mod ID: M5CSITE004199 Click to Show/Hide the Full List
mod site chr1:156743365-156743366:- [5]
Sequence AACTGGCCATGGCCTGCAAACTGGGAACCCCTTTCCCACCC
Cell/Tissue List HEK293T; HeLa; T24
Seq Type List Bisulfite-seq; m5C-RIP-seq
Transcript ID List ENST00000465180.5; ENST00000368209.9; ENST00000477306.1; ENST00000357325.10; ENST00000537739.5; ENST00000482651.5; ENST00000368206.5
External Link RMBase: m5C_site_4011
mod ID: M5CSITE004200 Click to Show/Hide the Full List
mod site chr1:156744157-156744158:- [4]
Sequence AGGGGACTTGCTGGAGGTAACTGCTGCCTGCCCAGGGCCTG
Seq Type List Bisulfite-seq
Transcript ID List ENST00000368209.9; ENST00000495212.1; ENST00000471377.5; ENST00000465180.5; ENST00000537739.5; ENST00000477306.1; ENST00000482651.5; ENST00000368206.5; ENST00000357325.10; ENST00000469145.5
External Link RMBase: m5C_site_4012
mod ID: M5CSITE004201 Click to Show/Hide the Full List
mod site chr1:156745104-156745105:- [4]
Sequence CCTCTTCCCTTACGAGGAATCCAAGGAGAAGTTTGGCAAGC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000495212.1; ENST00000537739.5; ENST00000368206.5; ENST00000469145.5; ENST00000471377.5; ENST00000357325.10; ENST00000465180.5; ENST00000368209.9; ENST00000482651.5
External Link RMBase: m5C_site_4013
mod ID: M5CSITE004202 Click to Show/Hide the Full List
mod site chr1:156751433-156751434:- [5]
Sequence AGCCCGGGGCGCCCGGAGCCCCGCCATGTCGCGATCCAACC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000537739.5; ENST00000357325.10; ENST00000495212.1; ENST00000469145.5; ENST00000465180.5; ENST00000368206.5; ENST00000471377.5; ENST00000368209.9
External Link RMBase: m5C_site_4014
mod ID: M5CSITE004203 Click to Show/Hide the Full List
mod site chr1:156751434-156751435:- [5]
Sequence GAGCCCGGGGCGCCCGGAGCCCCGCCATGTCGCGATCCAAC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000471377.5; ENST00000537739.5; ENST00000465180.5; ENST00000368209.9; ENST00000495212.1; ENST00000357325.10; ENST00000469145.5; ENST00000368206.5
External Link RMBase: m5C_site_4015
mod ID: M5CSITE004204 Click to Show/Hide the Full List
mod site chr1:156751435-156751436:- [5]
Sequence GGAGCCCGGGGCGCCCGGAGCCCCGCCATGTCGCGATCCAA
Seq Type List Bisulfite-seq
Transcript ID List ENST00000357325.10; ENST00000368209.9; ENST00000368206.5; ENST00000471377.5; ENST00000469145.5; ENST00000495212.1; ENST00000465180.5; ENST00000537739.5
External Link RMBase: m5C_site_4016
mod ID: M5CSITE004205 Click to Show/Hide the Full List
mod site chr1:156751444-156751445:- [5]
Sequence GCCCGGCGCGGAGCCCGGGGCGCCCGGAGCCCCGCCATGTC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000357325.10; ENST00000465180.5; ENST00000537739.5; ENST00000495212.1; ENST00000368206.5; ENST00000469145.5; ENST00000471377.5; ENST00000368209.9
External Link RMBase: m5C_site_4017
N6-methyladenosine (m6A)
In total 52 m6A sequence/site(s) in this target gene
mod ID: M6ASITE061011 Click to Show/Hide the Full List
mod site chr1:156742122-156742123:- [6]
Sequence TTCAGTTCTAGGAAAATAAAACCCGTTGATTACTATATTGG
Motif Score 2.185083333
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq; DART-seq
Transcript ID List ENST00000537739.5; ENST00000368209.9; ENST00000357325.10
External Link RMBase: m6A_site_59031
mod ID: M6ASITE061022 Click to Show/Hide the Full List
mod site chr1:156742154-156742155:- [6]
Sequence TTGGAAGTTTAGCTCTGAGAACCGTAGATGATTTCAGTTCT
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq; DART-seq
Transcript ID List ENST00000357325.10; ENST00000368209.9; ENST00000537739.5
External Link RMBase: m6A_site_59032
mod ID: M6ASITE061033 Click to Show/Hide the Full List
mod site chr1:156742183-156742184:- [7]
Sequence GCTCTGATGAAAAATTGCTGACTGTAGCTTTGGAAGTTTAG
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000357325.10; ENST00000537739.5; ENST00000368209.9
External Link RMBase: m6A_site_59033
mod ID: M6ASITE061044 Click to Show/Hide the Full List
mod site chr1:156742300-156742301:- [6]
Sequence ATTTGTAACCCACTGAGAGGACAGAGAGAAATAAGTGCCCT
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000357325.10; ENST00000368209.9; ENST00000537739.5
External Link RMBase: m6A_site_59034
mod ID: M6ASITE061055 Click to Show/Hide the Full List
mod site chr1:156742362-156742363:- [7]
Sequence TCCAGTGTCATTTCTCATCCACATACCCTGACCTGGCCCCC
Motif Score 2.053113095
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000357325.10; ENST00000537739.5; ENST00000368209.9
External Link RMBase: m6A_site_59035
mod ID: M6ASITE061066 Click to Show/Hide the Full List
mod site chr1:156742416-156742417:- [7]
Sequence CTTCTATTTGGGGCTTGATGACTTTCTTTTTGTAGCTGGGG
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000368209.9; ENST00000537739.5; ENST00000357325.10
External Link RMBase: m6A_site_59036
mod ID: M6ASITE061077 Click to Show/Hide the Full List
mod site chr1:156742535-156742536:- [7]
Sequence GTTTTTAATAAAAGAAAATTACAAAAAAAAATTTTAAAGAC
Motif Score 2.07285119
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000465180.5; ENST00000357325.10; ENST00000368209.9; ENST00000537739.5
External Link RMBase: m6A_site_59037
mod ID: M6ASITE061086 Click to Show/Hide the Full List
mod site chr1:156742571-156742572:- [7]
Sequence CCAGACATAAAGGAAAAGACACATTTTTTAGGAAATGTTTT
Motif Score 2.084928571
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000537739.5; ENST00000465180.5; ENST00000357325.10; ENST00000368209.9
External Link RMBase: m6A_site_59038
mod ID: M6ASITE061087 Click to Show/Hide the Full List
mod site chr1:156742573-156742574:- [7]
Sequence ACCCAGACATAAAGGAAAAGACACATTTTTTAGGAAATGTT
Motif Score 2.897386905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000537739.5; ENST00000368209.9; ENST00000357325.10; ENST00000465180.5
External Link RMBase: m6A_site_59039
mod ID: M6ASITE061088 Click to Show/Hide the Full List
mod site chr1:156742587-156742588:- [7]
Sequence TAGTCATATATATCACCCAGACATAAAGGAAAAGACACATT
Motif Score 2.897386905
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000465180.5; ENST00000368209.9; ENST00000537739.5; ENST00000357325.10
External Link RMBase: m6A_site_59040
mod ID: M6ASITE061089 Click to Show/Hide the Full List
mod site chr1:156742630-156742631:- [7]
Sequence AGCTGTCCTTTTTCCTCTCCACACAGTGCTCAAGGCCAGCT
Motif Score 2.053113095
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000368209.9; ENST00000465180.5; ENST00000357325.10; ENST00000537739.5
External Link RMBase: m6A_site_59041
mod ID: M6ASITE061090 Click to Show/Hide the Full List
mod site chr1:156742677-156742678:- [8]
Sequence CCCTTTAGATCTCTGAAGCCACAAATAGGATGCTTGGGAAG
Motif Score 2.053113095
Cell/Tissue List brain; liver; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000357325.10; ENST00000465180.5; ENST00000368209.9; ENST00000537739.5
External Link RMBase: m6A_site_59042
mod ID: M6ASITE061091 Click to Show/Hide the Full List
mod site chr1:156742735-156742736:- [7]
Sequence ACCTGAGACCTGAAGGGTTGACTTTACCCATTTGGGTGGGA
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000357325.10; ENST00000368209.9; ENST00000465180.5; ENST00000537739.5
External Link RMBase: m6A_site_59043
mod ID: M6ASITE061092 Click to Show/Hide the Full List
mod site chr1:156742848-156742849:- [9]
Sequence TAAATCCTTGATGATTGACAACACCCATTTTTCCTTTTGCC
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000357325.10; ENST00000368209.9; ENST00000537739.5; ENST00000465180.5
External Link RMBase: m6A_site_59044
mod ID: M6ASITE061093 Click to Show/Hide the Full List
mod site chr1:156742851-156742852:- [9]
Sequence CCATAAATCCTTGATGATTGACAACACCCATTTTTCCTTTT
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000368209.9; ENST00000465180.5; ENST00000537739.5; ENST00000357325.10
External Link RMBase: m6A_site_59045
mod ID: M6ASITE061094 Click to Show/Hide the Full List
mod site chr1:156742897-156742898:- [10]
Sequence CTAGATTCAGGGAAAGTGGGACAGCTTGTAGGGGAGGGGCT
Motif Score 3.643047619
Cell/Tissue List HepG2; MT4; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000357325.10; ENST00000465180.5; ENST00000368209.9; ENST00000537739.5
External Link RMBase: m6A_site_59046
mod ID: M6ASITE061095 Click to Show/Hide the Full List
mod site chr1:156742937-156742938:- [9]
Sequence CTGAGCTCCTGTCCCCTGCTACACCTATTATCCCAGCTGCC
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000537739.5; ENST00000368209.9; ENST00000357325.10; ENST00000465180.5
External Link RMBase: m6A_site_59047
mod ID: M6ASITE061096 Click to Show/Hide the Full List
mod site chr1:156743084-156743085:- [6]
Sequence CACTCTCCTAGGCATTCTGGACCTCTGGGTTGGGATCAGGG
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; H1A; H1B; MT4; A549; peripheral-blood; HEK293T; endometrial; NB4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000465180.5; ENST00000357325.10; ENST00000537739.5; ENST00000368209.9
External Link RMBase: m6A_site_59048
mod ID: M6ASITE061097 Click to Show/Hide the Full List
mod site chr1:156743116-156743117:- [8]
Sequence ACAACTGCTCCCACCTCCTGACACCCTTCTCCCACTCTCCT
Motif Score 2.859755952
Cell/Tissue List kidney; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000537739.5; ENST00000368209.9; ENST00000465180.5; ENST00000357325.10
External Link RMBase: m6A_site_59049
mod ID: M6ASITE061098 Click to Show/Hide the Full List
mod site chr1:156743136-156743137:- [6]
Sequence GGCTTCTGCTGGGGCCTGGGACAACTGCTCCCACCTCCTGA
Motif Score 3.643047619
Cell/Tissue List HeLa; hESC-HEK293T; HepG2; MT4; peripheral-blood; endometrial; NB4; MM6
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000357325.10; ENST00000368209.9; ENST00000537739.5; ENST00000465180.5
External Link RMBase: m6A_site_59050
mod ID: M6ASITE061099 Click to Show/Hide the Full List
mod site chr1:156743321-156743322:- [7]
Sequence CCTGCTCTCCTCTTCTACTCACTTTTCCCACTCCAAGCCCA
Motif Score 2.469291667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000537739.5; ENST00000368209.9; ENST00000482651.5; ENST00000357325.10; ENST00000477306.1; ENST00000465180.5
External Link RMBase: m6A_site_59051
mod ID: M6ASITE061100 Click to Show/Hide the Full List
mod site chr1:156743359-156743360:- [6]
Sequence CCATGGCCTGCAAACTGGGAACCCCTTTCCCACCCCAACCT
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000477306.1; ENST00000368209.9; ENST00000368206.5; ENST00000482651.5; ENST00000357325.10; ENST00000465180.5; ENST00000537739.5
External Link RMBase: m6A_site_59052
mod ID: M6ASITE061101 Click to Show/Hide the Full List
mod site chr1:156743366-156743367:- [6]
Sequence AAACTGGCCATGGCCTGCAAACTGGGAACCCCTTTCCCACC
Motif Score 2.627720238
Cell/Tissue List HeLa; HepG2; A549; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000537739.5; ENST00000465180.5; ENST00000368209.9; ENST00000357325.10; ENST00000477306.1; ENST00000368206.5; ENST00000482651.5
External Link RMBase: m6A_site_59053
mod ID: M6ASITE061102 Click to Show/Hide the Full List
mod site chr1:156743384-156743385:- [6]
Sequence GTCTGGGTGCTACTGGGGAAACTGGCCATGGCCTGCAAACT
Motif Score 2.627720238
Cell/Tissue List HeLa; HepG2; A549; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000368209.9; ENST00000477306.1; ENST00000357325.10; ENST00000482651.5; ENST00000537739.5; ENST00000465180.5; ENST00000368206.5
External Link RMBase: m6A_site_59054
mod ID: M6ASITE061103 Click to Show/Hide the Full List
mod site chr1:156743393-156743394:- [7]
Sequence CCTGCTGCTGTCTGGGTGCTACTGGGGAAACTGGCCATGGC
Motif Score 2.500660714
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000357325.10; ENST00000368209.9; ENST00000477306.1; ENST00000368206.5; ENST00000537739.5; ENST00000465180.5; ENST00000482651.5
External Link RMBase: m6A_site_59055
mod ID: M6ASITE061104 Click to Show/Hide the Full List
mod site chr1:156743528-156743529:- [6]
Sequence AGGGTGGGCTCTCCTAGGAGACCGGCACTGGCTGGGGCAAG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; A549; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000537739.5; ENST00000465180.5; ENST00000368209.9; ENST00000482651.5; ENST00000368206.5; ENST00000477306.1; ENST00000357325.10
External Link RMBase: m6A_site_59056
mod ID: M6ASITE061105 Click to Show/Hide the Full List
mod site chr1:156743608-156743609:- [6]
Sequence TGGCAGCTGGACTAGGGGGGACCGGCCACTCTCGGAGAAGA
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; U2OS; HEK293T; A549; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000368209.9; ENST00000477306.1; ENST00000465180.5; ENST00000482651.5; ENST00000368206.5; ENST00000537739.5; ENST00000357325.10
External Link RMBase: m6A_site_59057
mod ID: M6ASITE061106 Click to Show/Hide the Full List
mod site chr1:156743618-156743619:- [6]
Sequence CCTGACCCCTTGGCAGCTGGACTAGGGGGGACCGGCCACTC
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; U2OS; HEK293T; A549; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000477306.1; ENST00000368209.9; ENST00000368206.5; ENST00000537739.5; ENST00000357325.10; ENST00000465180.5; ENST00000482651.5
External Link RMBase: m6A_site_59058
mod ID: M6ASITE061107 Click to Show/Hide the Full List
mod site chr1:156743846-156743847:- [6]
Sequence ACGTCCCAAGGAGGCAGAAAACCCTGAAGGAGAGGAGAAGG
Motif Score 2.185083333
Cell/Tissue List HeLa; HepG2; HEK293T; U2OS; H1A; H1B; hNPCs; fibroblasts; A549; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000477306.1; ENST00000368209.9; ENST00000357325.10; ENST00000465180.5; ENST00000469145.5; ENST00000368206.5; ENST00000482651.5; ENST00000471377.5; ENST00000495212.1; ENST00000537739.5
External Link RMBase: m6A_site_59059
mod ID: M6ASITE061108 Click to Show/Hide the Full List
mod site chr1:156744172-156744173:- [6]
Sequence GTTGAAGAGGAGAGCAGGGGACTTGCTGGAGGTAACTGCTG
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; HEK293T; U2OS; H1A; H1B; hNPCs; fibroblasts; A549; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000368209.9; ENST00000471377.5; ENST00000482651.5; ENST00000469145.5; ENST00000465180.5; ENST00000537739.5; ENST00000477306.1; ENST00000357325.10; ENST00000495212.1; ENST00000368206.5
External Link RMBase: m6A_site_59060
mod ID: M6ASITE061109 Click to Show/Hide the Full List
mod site chr1:156744250-156744251:- [7]
Sequence GAATGCAGAGGGCAGCAGCGACGAGGAAGGGAAGCTGGTCA
Motif Score 2.839505952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000471377.5; ENST00000368206.5; ENST00000368209.9; ENST00000357325.10; ENST00000537739.5; ENST00000495212.1; ENST00000465180.5; ENST00000482651.5; ENST00000477306.1; ENST00000469145.5
External Link RMBase: m6A_site_59061
mod ID: M6ASITE061110 Click to Show/Hide the Full List
mod site chr1:156744312-156744313:- [6]
Sequence AGCTGTGTGGAAGAGCCTGAACCAGAGCCCGAAGCTGCAGA
Motif Score 2.930744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; U2OS; hNPCs; fibroblasts; A549; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000368209.9; ENST00000469145.5; ENST00000482651.5; ENST00000357325.10; ENST00000465180.5; ENST00000537739.5; ENST00000495212.1; ENST00000368206.5; ENST00000471377.5
External Link RMBase: m6A_site_59062
mod ID: M6ASITE061111 Click to Show/Hide the Full List
mod site chr1:156745038-156745039:- [6]
Sequence GGGGCTGTGGGAGATCGAGAACAACCCTACTGTCAAGGCTT
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; HepG2; hESC-HEK293T; U2OS; A549; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000465180.5; ENST00000368209.9; ENST00000482651.5; ENST00000469145.5; ENST00000537739.5; ENST00000471377.5; ENST00000495212.1; ENST00000368206.5; ENST00000357325.10
External Link RMBase: m6A_site_59063
mod ID: M6ASITE061112 Click to Show/Hide the Full List
mod site chr1:156745080-156745081:- [8]
Sequence GGAGAAGTTTGGCAAGCCCAACAAGAGGAAAGGGTTCAGCG
Motif Score 2.173910714
Cell/Tissue List brain; kidney; liver; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000368209.9; ENST00000482651.5; ENST00000368206.5; ENST00000495212.1; ENST00000357325.10; ENST00000465180.5; ENST00000469145.5; ENST00000537739.5; ENST00000471377.5
External Link RMBase: m6A_site_59064
mod ID: M6ASITE061113 Click to Show/Hide the Full List
mod site chr1:156745125-156745126:- [6]
Sequence GGCATTCCTGGGCCCCAAAGACCTCTTCCCTTACGAGGAAT
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; U2OS; A549; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; HEK293T; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000465180.5; ENST00000537739.5; ENST00000357325.10; ENST00000368206.5; ENST00000482651.5; ENST00000368209.9; ENST00000471377.5; ENST00000495212.1; ENST00000469145.5
External Link RMBase: m6A_site_59065
mod ID: M6ASITE061114 Click to Show/Hide the Full List
mod site chr1:156745250-156745251:- [11]
Sequence GTCGGGAGGGCCCCGGGAGGACTACTCTGGGGAAGGTGAGG
Motif Score 4.065041667
Cell/Tissue List A549
Seq Type List m6A-seq
Transcript ID List ENST00000482651.5; ENST00000537739.5; ENST00000495212.1; ENST00000368206.5; ENST00000465180.5; ENST00000357325.10; ENST00000368209.9; ENST00000469145.5; ENST00000471377.5
External Link RMBase: m6A_site_59066
mod ID: M6ASITE061115 Click to Show/Hide the Full List
mod site chr1:156745306-156745307:- [12]
Sequence ACCAAGTCTTTTTTTTCGGGACCCACGAGACGTGAGTGGAG
Motif Score 3.622404762
Cell/Tissue List MT4; A549; MM6; Huh7
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000368206.5; ENST00000471377.5; ENST00000469145.5; ENST00000357325.10; ENST00000368209.9; ENST00000495212.1; ENST00000482651.5; ENST00000537739.5; ENST00000465180.5
External Link RMBase: m6A_site_59067
mod ID: M6ASITE061116 Click to Show/Hide the Full List
mod site chr1:156745332-156745333:- [9]
Sequence TGCCGTGAAATCAACAGCCAACAAATACCAAGTCTTTTTTT
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000495212.1; ENST00000465180.5; ENST00000482651.5; ENST00000537739.5; ENST00000357325.10; ENST00000471377.5; ENST00000368206.5; ENST00000469145.5; ENST00000368209.9
External Link RMBase: m6A_site_59068
mod ID: M6ASITE061117 Click to Show/Hide the Full List
mod site chr1:156747458-156747459:- [10]
Sequence CCCAGGCGTCCTGGCTGAGGACCGACTCCTCTGTCCCTGCT
Motif Score 3.622404762
Cell/Tissue List HepG2; U2OS; MT4; A549; MM6; Huh7; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000357325.10; ENST00000368209.9; ENST00000465180.5; ENST00000471377.5; ENST00000482651.5; ENST00000368206.5; ENST00000495212.1; ENST00000469145.5; ENST00000537739.5
External Link RMBase: m6A_site_59069
mod ID: M6ASITE061118 Click to Show/Hide the Full List
mod site chr1:156751355-156751356:- [7]
Sequence CAAGATGAAGGGCTACCCACACTGGCCGGCCCGGGTGAGCA
Motif Score 2.506922619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000471377.5; ENST00000357325.10; ENST00000495212.1; ENST00000368206.5; ENST00000368209.9; ENST00000537739.5; ENST00000469145.5; ENST00000465180.5
External Link RMBase: m6A_site_59070
mod ID: M6ASITE061119 Click to Show/Hide the Full List
mod site chr1:156751357-156751358:- [9]
Sequence GCCAAGATGAAGGGCTACCCACACTGGCCGGCCCGGGTGAG
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000465180.5; ENST00000357325.10; ENST00000469145.5; ENST00000471377.5; ENST00000495212.1; ENST00000368206.5; ENST00000368209.9; ENST00000537739.5
External Link RMBase: m6A_site_59071
mod ID: M6ASITE061120 Click to Show/Hide the Full List
mod site chr1:156751388-156751389:- [13]
Sequence GAAGGAGTACAAATGCGGGGACCTGGTGTTCGCCAAGATGA
Motif Score 3.622404762
Cell/Tissue List A549; HepG2; U2OS; MT4; MM6; Huh7; NB4
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000537739.5; ENST00000469145.5; ENST00000368209.9; ENST00000368206.5; ENST00000357325.10; ENST00000471377.5; ENST00000465180.5; ENST00000495212.1
External Link RMBase: m6A_site_59072
mod ID: M6ASITE061121 Click to Show/Hide the Full List
mod site chr1:156751400-156751401:- [9]
Sequence ATCCAACCGGCAGAAGGAGTACAAATGCGGGGACCTGGTGT
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000495212.1; ENST00000471377.5; ENST00000357325.10; ENST00000368206.5; ENST00000537739.5; ENST00000465180.5; ENST00000368209.9; ENST00000469145.5
External Link RMBase: m6A_site_59073
mod ID: M6ASITE061122 Click to Show/Hide the Full List
mod site chr1:156751484-156751485:- [6]
Sequence CGCCACCGCCGCACGCGCAAACTTGGGCTCGCGCTTCCCGG
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HepG2; A549; U2OS; MM6; Jurkat; GSC-11; HEK293T; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000357325.10; ENST00000469145.5; ENST00000465180.5; ENST00000537739.5; ENST00000471377.5; ENST00000368206.5; ENST00000368209.9; ENST00000495212.1
External Link RMBase: m6A_site_59074
mod ID: M6ASITE061123 Click to Show/Hide the Full List
mod site chr1:156751662-156751663:- [14]
Sequence TTGAATTTCAAACACAAACAACTGCACGAGCGCGCACCCAC
Motif Score 2.595904762
Cell/Tissue List A549
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000465180.5; ENST00000368206.5; ENST00000357325.10; ENST00000471377.5; ENST00000368209.9
External Link RMBase: m6A_site_59075
mod ID: M6ASITE061124 Click to Show/Hide the Full List
mod site chr1:156751665-156751666:- [6]
Sequence CAATTGAATTTCAAACACAAACAACTGCACGAGCGCGCACC
Motif Score 2.20572619
Cell/Tissue List HeLa; A549; hESC-HEK293T; HepG2; U2OS; H1A; H1B; hESCs; fibroblasts; H1299; MM6; Huh7; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000368206.5; ENST00000465180.5; ENST00000368209.9; ENST00000357325.10; ENST00000471377.5
External Link RMBase: m6A_site_59076
mod ID: M6ASITE061125 Click to Show/Hide the Full List
mod site chr1:156751671-156751672:- [6]
Sequence AGGGAGCAATTGAATTTCAAACACAAACAACTGCACGAGCG
Motif Score 2.20572619
Cell/Tissue List HeLa; A549; hESC-HEK293T; HepG2; U2OS; H1A; H1B; hESCs; fibroblasts; H1299; MM6; Huh7; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000368206.5; ENST00000357325.10; ENST00000471377.5; ENST00000465180.5; ENST00000368209.9
External Link RMBase: m6A_site_59077
mod ID: M6ASITE061126 Click to Show/Hide the Full List
mod site chr1:156752080-156752081:- [6]
Sequence GGAGCAGAGGGCAGGCGGAAACCGTGTACAGACGTCCACAC
Motif Score 2.185083333
Cell/Tissue List HeLa; A549; HepG2; U2OS; H1A; H1B; hESCs; HEK293T; fibroblasts; H1299; MM6; Huh7; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000368209.9; ENST00000368206.5; ENST00000471377.5; ENST00000465180.5
External Link RMBase: m6A_site_59078
mod ID: M6ASITE061127 Click to Show/Hide the Full List
mod site chr1:156752136-156752137:- [6]
Sequence CGCCTAGCACGCTGCCAAGAACCGCGGGTGCCCAGTAAATA
Motif Score 2.930744048
Cell/Tissue List HeLa; A549; H1B; H1A; H1299; peripheral-blood; GSC-11; HEK293A-TOA; MSC; iSLK; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List rmsk_276152; ENST00000471377.5; ENST00000465180.5; ENST00000368206.5; ENST00000368209.9
External Link RMBase: m6A_site_59079
mod ID: M6ASITE061128 Click to Show/Hide the Full List
mod site chr1:156752202-156752203:- [6]
Sequence CACGGCGAGGTCCAGAGAGGACCCCAGTGCGCGGAGCGGCA
Motif Score 3.622404762
Cell/Tissue List HeLa; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000471377.5; ENST00000368209.9; ENST00000368206.5; ENST00000465180.5
External Link RMBase: m6A_site_59080
mod ID: M6ASITE061129 Click to Show/Hide the Full List
mod site chr1:156752303-156752304:- [6]
Sequence GGCCATCTCCTGGCTACCAAACTCAAGCGTTTCCTCCTTAG
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000368206.5; ENST00000465180.5
External Link RMBase: m6A_site_59081
mod ID: M6ASITE061130 Click to Show/Hide the Full List
mod site chr1:156752388-156752389:- [6]
Sequence GTCCAAGTCTCCTTGGCAAGACAGTAGCTTAGAGAAACGAG
Motif Score 2.897386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000368206.5; ENST00000465180.5
External Link RMBase: m6A_site_59082