General Information of the m6A Target Gene (ID: M6ATAR01683)
Target Name Tubulin beta-4B chain (TUBB4B)
Synonyms
Tubulin beta-2 chain; Tubulin beta-2C chain
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Gene Name TUBB4B
Chromosomal Location 9q34.3
Family Tubulin family
Function
Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers. Microtubules grow by the addition of GTP-tubulin dimers to the microtubule end, where a stabilizing cap forms. Below the cap, tubulin dimers are in GDP-bound state, owing to GTPase activity of alpha-tubulin.
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Gene ID 10383
Uniprot ID
TBB4B_HUMAN
HGNC ID
HGNC:20771
KEGG ID
hsa:10383
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Non-coding RNA
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05029
Epigenetic Regulator hsa-miR-1226-3p
Regulated Target Methyltransferase-like protein 3 (METTL3)
Crosstalk relationship ncRNA → m6A
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01683)
Tubulin beta-4B chain (TUBB4B)
5-methylcytidine (m5C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: M5CSITE004513 Click to Show/Hide the Full List
mod site chr9:137241349-137241350:+ [2]
Sequence CTCCTGCTTCCCCGCCGCCGCCGCCGCCATCATGAGGGAAA
Seq Type List Bisulfite-seq
Transcript ID List rmsk_2903573; ENST00000604929.1; ENST00000340384.5
External Link RMBase: m5C_site_44315
N6-methyladenosine (m6A)
In total 31 m6A sequence/site(s) in this target gene
mod ID: M6ASITE090616 Click to Show/Hide the Full List
mod site chr9:137241778-137241779:+ [3]
Sequence CACGGGCACCTACCACGGGGACAGCGACCTGCAGCTGGAAC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; A549; U2OS; MT4; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849372
mod ID: M6ASITE090617 Click to Show/Hide the Full List
mod site chr9:137241814-137241815:+ [4]
Sequence GGAACGCATCAACGTGTACTACAATGAGGCCACCGGTGAGG
Motif Score 2.078666667
Cell/Tissue List brain; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849373
mod ID: M6ASITE090618 Click to Show/Hide the Full List
mod site chr9:137241964-137241965:+ [3]
Sequence TCTGGAGCCCGGCACCATGGACTCCGTGCGCTCGGGGCCCT
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; A549; HEK293T; U2OS; MM6; Huh7; CD4T; peripheral-blood; GSC-11; iSLK; TIME; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849374
mod ID: M6ASITE090619 Click to Show/Hide the Full List
mod site chr9:137242006-137242007:+ [3]
Sequence CGGGCAGATCTTCCGGCCGGACAACTTCGTTTTCGGTGAGC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; A549; hESC-HEK293T; U2OS; MM6; Huh7; CD4T; peripheral-blood; GSC-11; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849375
mod ID: M6ASITE090620 Click to Show/Hide the Full List
mod site chr9:137242038-137242039:+ [3]
Sequence TCGGTGAGCCGTGGCTGGGGACTGGGCGGCGGCTCAAAGGT
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; A549; HEK293T; U2OS; MM6; Huh7; CD4T; peripheral-blood; GSC-11; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849376
mod ID: M6ASITE090621 Click to Show/Hide the Full List
mod site chr9:137242091-137242092:+ [3]
Sequence CCAAGGGCACCGCCGTGGGAACTGCGCAGCCGGGGCCCCTG
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; A549; HEK293T; U2OS; MM6; Huh7; peripheral-blood; GSC-11; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849377
mod ID: M6ASITE090622 Click to Show/Hide the Full List
mod site chr9:137242513-137242514:+ [3]
Sequence AGGTCAGAGTGGTGCTGGGAACAACTGGGCCAAGGGGCACT
Motif Score 2.951386905
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hESC-HEK293T; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849378
mod ID: M6ASITE090623 Click to Show/Hide the Full List
mod site chr9:137242534-137242535:+ [5]
Sequence CAACTGGGCCAAGGGGCACTACACAGAAGGCGCGGAGCTGG
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849379
mod ID: M6ASITE090624 Click to Show/Hide the Full List
mod site chr9:137242558-137242559:+ [3]
Sequence AGAAGGCGCGGAGCTGGTGGACTCGGTGCTGGATGTTGTGA
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849380
mod ID: M6ASITE090625 Click to Show/Hide the Full List
mod site chr9:137242644-137242645:+ [3]
Sequence CCCACTCCCTGGGTGGGGGGACTGGGTCTGGGATGGGTACC
Motif Score 4.065041667
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4; AML
Seq Type List m6A-seq; MeRIP-seq; miCLIP
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849381
mod ID: M6ASITE090626 Click to Show/Hide the Full List
mod site chr9:137242699-137242700:+ [3]
Sequence GATCCGGGAGGAGTACCCAGACAGGATCATGAACACGTTTA
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hESC-HEK293T; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4; AML
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP; miCLIP
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849382
mod ID: M6ASITE090627 Click to Show/Hide the Full List
mod site chr9:137242711-137242712:+ [3]
Sequence GTACCCAGACAGGATCATGAACACGTTTAGTGTGGTGCCTT
Motif Score 2.951386905
Cell/Tissue List HeLa; HepG2; HEK293T; brain; kidney; A549; hESC-HEK293T; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4; AML
Seq Type List m6A-seq; MeRIP-seq; m6A-REF-seq; MAZTER-seq; miCLIP
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849383
mod ID: M6ASITE090628 Click to Show/Hide the Full List
mod site chr9:137242747-137242748:+ [3]
Sequence GCCTTCGCCCAAAGTGTCAGACACAGTGGTGGAGCCCTACA
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849384
mod ID: M6ASITE090629 Click to Show/Hide the Full List
mod site chr9:137242801-137242802:+ [3]
Sequence AGTCCACCAGCTCGTAGAAAACACAGACGAGACCTACTGCA
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4; AML
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; miCLIP
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849385
mod ID: M6ASITE090630 Click to Show/Hide the Full List
mod site chr9:137242812-137242813:+ [3]
Sequence TCGTAGAAAACACAGACGAGACCTACTGCATTGATAACGAA
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hNPCs; hESCs; fibroblasts; LCLs; MT4; H1299; MM6; Huh7; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849386
mod ID: M6ASITE090631 Click to Show/Hide the Full List
mod site chr9:137242843-137242844:+ [6]
Sequence TGATAACGAAGCTCTCTACGACATTTGCTTCAGAACCCTAA
Motif Score 2.865571429
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849387
mod ID: M6ASITE090632 Click to Show/Hide the Full List
mod site chr9:137242857-137242858:+ [3]
Sequence TCTACGACATTTGCTTCAGAACCCTAAAGCTGACCACGCCC
Motif Score 2.930744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hNPCs; hESCs; fibroblasts; LCLs; MT4; H1299; MM6; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849388
mod ID: M6ASITE090633 Click to Show/Hide the Full List
mod site chr9:137242894-137242895:+ [3]
Sequence GCCCACCTATGGTGACCTGAACCACCTGGTGTCTGCTACCA
Motif Score 2.930744048
Cell/Tissue List HeLa; CD34; HEK293T; A549; HepG2; hNPCs; hESCs; fibroblasts; LCLs; MT4; H1299; MM6; Huh7; peripheral-blood; iSLK; MSC; TIME; TREX; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849389
mod ID: M6ASITE090634 Click to Show/Hide the Full List
mod site chr9:137242984-137242985:+ [7]
Sequence CCTGCGGAAGCTGGCTGTGAACATGGTCCCGTTTCCCCGGC
Motif Score 2.951386905
Cell/Tissue List CD34; HepG2; brain; HEK293; kidney; A549; hESC-HEK293T; HeLa; hESCs; H1299; MM6; peripheral-blood; iSLK; MSC; TIME; TREX; AML
Seq Type List m6A-seq; m6A-REF-seq; MeRIP-seq; MAZTER-seq; miCLIP
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849390
mod ID: M6ASITE090635 Click to Show/Hide the Full List
mod site chr9:137243110-137243111:+ [8]
Sequence GCAGATGTTTGATGCCAAGAACATGATGGCTGCCTGCGACC
Motif Score 2.951386905
Cell/Tissue List HepG2; A549; hESC-HEK293T; HeLa; H1299; MM6; peripheral-blood; iSLK; TIME; TREX; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849391
mod ID: M6ASITE090636 Click to Show/Hide the Full List
mod site chr9:137243221-137243222:+ [8]
Sequence GCAAATGCTTAATGTCCAAAACAAAAACAGCAGCTATTTTG
Motif Score 2.20572619
Cell/Tissue List HepG2; hESC-HEK293T; A549; MM6; peripheral-blood; endometrial; NB4
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849392
mod ID: M6ASITE090637 Click to Show/Hide the Full List
mod site chr9:137243227-137243228:+ [9]
Sequence GCTTAATGTCCAAAACAAAAACAGCAGCTATTTTGTTGAGT
Motif Score 2.20572619
Cell/Tissue List HepG2; MM6; peripheral-blood; endometrial; NB4
Seq Type List m6A-seq
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: m6A_site_849393
mod ID: M6ASITE090638 Click to Show/Hide the Full List
mod site chr9:137243281-137243282:+ [4]
Sequence TGTGAAAACGGCTGTCTGTGACATCCCACCTCGGGGGCTAA
Motif Score 2.859755952
Cell/Tissue List kidney; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849394
mod ID: M6ASITE090639 Click to Show/Hide the Full List
mod site chr9:137243410-137243411:+ [5]
Sequence CAAGGCCTTCCTGCACTGGTACACGGGCGAGGGCATGGACG
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849395
mod ID: M6ASITE090640 Click to Show/Hide the Full List
mod site chr9:137243458-137243459:+ [5]
Sequence GTTCACCGAGGCCGAGAGCAACATGAATGACCTGGTGTCCG
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849396
mod ID: M6ASITE090641 Click to Show/Hide the Full List
mod site chr9:137243502-137243503:+ [4]
Sequence ACCAGCAGTACCAGGATGCCACAGCCGAGGAGGAGGGCGAG
Motif Score 2.053113095
Cell/Tissue List brain
Seq Type List m6A-REF-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849397
mod ID: M6ASITE090642 Click to Show/Hide the Full List
mod site chr9:137243594-137243595:+ [3]
Sequence AAAGCAGGGAAGCAGTGTGAACTCTTTATTCACTCCCAGCC
Motif Score 3.373380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849398
mod ID: M6ASITE090644 Click to Show/Hide the Full List
mod site chr9:137243642-137243643:+ [6]
Sequence TGGCCTGTCCCACTGTGTGCACTTGCTGTTTTCCCTGTCCA
Motif Score 3.252583333
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849401
mod ID: M6ASITE090645 Click to Show/Hide the Full List
mod site chr9:137243662-137243663:+ [5]
Sequence ACTTGCTGTTTTCCCTGTCCACATCCATGCTGTACAGACAC
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849404
mod ID: M6ASITE090646 Click to Show/Hide the Full List
mod site chr9:137243675-137243676:+ [6]
Sequence CCTGTCCACATCCATGCTGTACAGACACCACCATTAAAGCA
Motif Score 2.856142857
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849405
mod ID: M6ASITE090647 Click to Show/Hide the Full List
mod site chr9:137243679-137243680:+ [3]
Sequence TCCACATCCATGCTGTACAGACACCACCATTAAAGCATTTT
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; HEK293T; A549; LCLs; MT4; H1299; MM6; Huh7; peripheral-blood; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: m6A_site_849406
2'-O-Methylation (2'-O-Me)
In total 1 m6A sequence/site(s) in this target gene
mod ID: 2OMSITE000520 Click to Show/Hide the Full List
mod site chr9:137243639-137243640:+ [10]
Sequence CTGTGGCCTGTCCCACTGTGTGCACTTGCTGTTTTCCCTGT
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: Nm_site_6739
Pseudouridine (Pseudo)
In total 2 m6A sequence/site(s) in this target gene
mod ID: PSESITE000273 Click to Show/Hide the Full List
mod site chr9:137242910-137242911:+ [11]
Sequence CTGAACCACCTGGTGTCTGCTACCATGAGTGGGGTCACCAC
Transcript ID List ENST00000340384.5; ENST00000604929.1
External Link RMBase: Pseudo_site_4828
mod ID: PSESITE000274 Click to Show/Hide the Full List
mod site chr9:137243349-137243350:+ [11]
Sequence GCACGGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAG
Transcript ID List ENST00000604929.1; ENST00000340384.5
External Link RMBase: Pseudo_site_4829