m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR01231)

Target Name	ZEB1 antisense RNA 1 (ZEB1-AS1)
Synonyms	ZEB1 antisense RNA 1 (non-protein coding) Click to Show/Hide
Gene Name	ZEB1-AS1
Chromosomal Location	10p11.22
Gene ID	220930
HGNC ID	HGNC:42354

Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator

RNA modification

m6A Regulator: ELAV-like protein 1 (ELAVL1)

Regulator Info

In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00551		Crosstalk Info
Epigenetic Regulator	Y-box-binding protein 1 (YBX1)
Regulated Target	MicroRNA 205 (MIR205)
Crosstalk relationship	m6A → m5C

RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01231)

ZEB1 antisense RNA 1 (ZEB1-AS1)

N6-methyladenosine (m6A)

In total 24 m6A sequence/site(s) in this target gene
mod ID: M6ASITE096019		Click to Show/Hide the Full List
mod site	chr10:31316532-31316533:-		[2]
Sequence	AGAATAAATTACTGCTTTAAACATGATGCATGTGTGACGGT
Motif Score	2.20572619
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000424191.1; ENST00000607166.1; ENST00000605946.1; ENST00000450834.2
External Link	RMBase: m6A_site_97037
mod ID: M6ASITE096020		Click to Show/Hide the Full List
mod site	chr10:31316571-31316572:-		[2]
Sequence	ATACCTGGACTGGAAAGAAAACAGACAAAAGTAAATCTCAG
Motif Score	2.20572619
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000605946.1; ENST00000607166.1; ENST00000450834.2; ENST00000424191.1
External Link	RMBase: m6A_site_97038
mod ID: M6ASITE096021		Click to Show/Hide the Full List
mod site	chr10:31316583-31316584:-		[2]
Sequence	TTGAAAATATTGATACCTGGACTGGAAAGAAAACAGACAAA
Motif Score	4.065041667
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000450834.2; ENST00000424191.1; ENST00000605946.1; ENST00000607166.1
External Link	RMBase: m6A_site_97039
mod ID: M6ASITE096022		Click to Show/Hide the Full List
mod site	chr10:31317229-31317230:-		[3]
Sequence	AAAAACTTTCCAGCTCTATCACACATTTTACCTACTCTTAA
Motif Score	2.047297619
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000450834.2; ENST00000607166.1; ENST00000424191.1; ENST00000605946.1
External Link	RMBase: m6A_site_97040
mod ID: M6ASITE096023		Click to Show/Hide the Full List
mod site	chr10:31317245-31317246:-		[2]
Sequence	TGACCAGAAAGGAAAAAAAAACTTTCCAGCTCTATCACACA
Motif Score	2.627720238
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000450834.2; ENST00000605946.1; ENST00000607166.1; ENST00000424191.1
External Link	RMBase: m6A_site_97041
mod ID: M6ASITE096024		Click to Show/Hide the Full List
mod site	chr10:31317316-31317317:-		[2]
Sequence	CCTACCGAATCAGGTCATAGACTATGGAATTGACCCCACCC
Motif Score	3.319380952
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000450834.2; ENST00000607166.1; ENST00000605946.1; ENST00000424191.1
External Link	RMBase: m6A_site_97042
mod ID: M6ASITE096025		Click to Show/Hide the Full List
mod site	chr10:31317635-31317636:-		[3]
Sequence	TTAATCTTGAATATAAATGAACATTTTCTCTCCCACATTTT
Motif Score	2.951386905
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000605946.1; ENST00000450834.2; ENST00000424191.1; ENST00000607166.1
External Link	RMBase: m6A_site_97043
mod ID: M6ASITE096026		Click to Show/Hide the Full List
mod site	chr10:31317754-31317755:-		[3]
Sequence	AGGTTAAAATTATCTTTTAAACACCTTCCGGAATTTTAGAA
Motif Score	2.20572619
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000607166.1; ENST00000424191.1; ENST00000605946.1; ENST00000450834.2
External Link	RMBase: m6A_site_97044
mod ID: M6ASITE096027		Click to Show/Hide the Full List
mod site	chr10:31317897-31317898:-		[4]
Sequence	TTGATAGAGAAATTGAGAAAACTGAAACGTGACCGGAGTAT
Motif Score	2.627720238
Cell/Tissue List	HEK293T; hNPCs; Huh7
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000607166.1; ENST00000605946.1; ENST00000424191.1; ENST00000450834.2
External Link	RMBase: m6A_site_97045
mod ID: M6ASITE096028		Click to Show/Hide the Full List
mod site	chr10:31317990-31317991:-		[5]
Sequence	AATAAGGAAACGTCTTTGGGACCAACTTTATGGAATAAATA
Motif Score	3.622404762
Cell/Tissue List	HEK293T; GM12878; Huh7; HEK293A-TOA; MSC
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000605946.1; ENST00000450834.2; ENST00000607166.1; ENST00000424191.1
External Link	RMBase: m6A_site_97046
mod ID: M6ASITE096029		Click to Show/Hide the Full List
mod site	chr10:31318102-31318103:-		[6]
Sequence	GTTTTGGGATTTCTGAAAAGACCATACAGATAACCACAAAT
Motif Score	2.876744048
Cell/Tissue List	HeLa; HEK293T; A549; HepG2; U2OS; H1A; H1B; fibroblasts; GM12878; LCLs; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000605946.1; ENST00000424191.1; ENST00000441257.1; ENST00000607166.1; ENST00000450834.2
External Link	RMBase: m6A_site_97047
mod ID: M6ASITE096030		Click to Show/Hide the Full List
mod site	chr10:31318171-31318172:-		[6]
Sequence	CTGACAGATGTGATCTCTGAACCTGATAGATTGCTGATTTT
Motif Score	2.930744048
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; fibroblasts; GM12878; LCLs; Huh7; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000450834.2; ENST00000605946.1; ENST00000424191.1; ENST00000441257.1; ENST00000607166.1
External Link	RMBase: m6A_site_97048
mod ID: M6ASITE096031		Click to Show/Hide the Full List
mod site	chr10:31318213-31318214:-		[6]
Sequence	AGCGGTCATCGCCGTGCAGGACCTTAAGGCAAGAAGCATCG
Motif Score	3.622404762
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; Huh7; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000441257.1; ENST00000605946.1; ENST00000424191.1; ENST00000450834.2; ENST00000607166.1
External Link	RMBase: m6A_site_97049
mod ID: M6ASITE096032		Click to Show/Hide the Full List
mod site	chr10:31318278-31318279:-		[6]
Sequence	GTGGGATCCTAGGTGGCAGGACTCAGAGCTAAGGTATCCAC
Motif Score	4.065041667
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000424191.1; ENST00000441257.1; ENST00000606286.1; ENST00000450834.2; ENST00000607166.1; ENST00000605946.1
External Link	RMBase: m6A_site_97050
mod ID: M6ASITE096033		Click to Show/Hide the Full List
mod site	chr10:31318301-31318302:-		[6]
Sequence	CGCCCTCTTCCTCGCGTAGAACCGTGGGATCCTAGGTGGCA
Motif Score	2.930744048
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000441257.1; ENST00000605946.1; ENST00000424191.1; ENST00000607166.1; ENST00000450834.2; ENST00000606286.1
External Link	RMBase: m6A_site_97051
mod ID: M6ASITE096034		Click to Show/Hide the Full List
mod site	chr10:31318482-31318483:-		[6]
Sequence	AGTGACTTCAATGAGATTGAACTTCAGCTGGATTGAAAGAG
Motif Score	3.373380952
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; GM12878; LCLs; MT4; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000423714.1; ENST00000606286.1; ENST00000450834.2; ENST00000607455.1; ENST00000605946.1; ENST00000424191.1; ENST00000606250.1; ENST00000441257.1; ENST00000607166.1
External Link	RMBase: m6A_site_97052
mod ID: M6ASITE096035		Click to Show/Hide the Full List
mod site	chr10:31318514-31318515:-		[6]
Sequence	CCTGGTTTCCCCCCAAGCGAACCGGGATGGGAAGTGACTTC
Motif Score	2.930744048
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; GM12878; LCLs; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000450834.2; ENST00000606286.1; ENST00000441257.1; ENST00000424191.1; ENST00000607166.1; ENST00000605946.1; ENST00000607455.1; ENST00000606250.1; ENST00000423714.1
External Link	RMBase: m6A_site_97053
mod ID: M6ASITE096037		Click to Show/Hide the Full List
mod site	chr10:31318561-31318562:-		[6]
Sequence	ACCTGACCCGCGCAGCCCGGACTCCCTTCCCTTCCCTTCCA
Motif Score	4.065041667
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; GM12878; LCLs; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000605946.1; ENST00000606250.1; ENST00000423714.1; ENST00000607455.1; ENST00000607166.1; ENST00000441257.1; ENST00000606286.1; ENST00000424191.1; ENST00000450834.2
External Link	RMBase: m6A_site_97055
mod ID: M6ASITE096038		Click to Show/Hide the Full List
mod site	chr10:31318605-31318606:-		[6]
Sequence	CAGGTTTGGGGACGGCGAGGACACGCGGCGACCGGAGAGAG
Motif Score	3.643047619
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; GM12878; LCLs; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000450834.2; ENST00000424191.1; ENST00000606286.1; ENST00000423714.1; ENST00000607166.1; ENST00000605946.1; ENST00000441257.1; ENST00000607455.1; ENST00000606250.1
External Link	RMBase: m6A_site_97056
mod ID: M6ASITE096039		Click to Show/Hide the Full List
mod site	chr10:31318659-31318660:-		[6]
Sequence	GGAAAGGGATCGCGGTCTGGACTCCCCGGGGAGTTCCCTTG
Motif Score	4.065041667
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; GM12878; LCLs; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000606250.1; ENST00000424191.1; ENST00000423714.1; ENST00000450834.2; ENST00000605946.1; ENST00000607455.1; ENST00000607166.1; ENST00000606286.1; ENST00000441257.1
External Link	RMBase: m6A_site_97057
mod ID: M6ASITE096040		Click to Show/Hide the Full List
mod site	chr10:31318942-31318943:-		[6]
Sequence	AGGGAGGCGGATGCCGGGAAACCGTAGGGACGCGGTCAGAA
Motif Score	2.185083333
Cell/Tissue List	HeLa; U2OS; Jurkat; HEK293A-TOA; MSC; TIME; TREX; HEC-1-A
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000607166.1; ENST00000605946.1; ENST00000441257.1; ENST00000607455.1; ENST00000606250.1; ENST00000450834.2; ENST00000423714.1; ENST00000606286.1
External Link	RMBase: m6A_site_97058
mod ID: M6ASITE096043		Click to Show/Hide the Full List
mod site	chr10:31319046-31319047:-		[6]
Sequence	CCGGAACCTTGTTGCTAGGGACCGGGCGGTTTGCGGCAACC
Motif Score	3.622404762
Cell/Tissue List	HeLa; HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000606250.1; ENST00000605946.1; ENST00000606286.1; ENST00000423714.1; ENST00000607455.1
External Link	RMBase: m6A_site_97061
mod ID: M6ASITE096046		Click to Show/Hide the Full List
mod site	chr10:31319518-31319519:-		[6]
Sequence	GAGCCGCTAGGCGGAGAGAGACCAGGTAAGAGACATAACGG
Motif Score	2.876744048
Cell/Tissue List	HeLa; HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000606250.1; ENST00000606286.1; ENST00000423714.1; ENST00000605946.1
External Link	RMBase: m6A_site_97064
mod ID: M6ASITE096047		Click to Show/Hide the Full List
mod site	chr10:31319638-31319639:-		[6]
Sequence	CAACAGCCGCTCCACCCGGGACCAGAAAAGTGGCCAGTGCG
Motif Score	3.622404762
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000606286.1; ENST00000606250.1; ENST00000423714.1; ENST00000605946.1
External Link	RMBase: m6A_site_97065

Ref 1	2011 Pipeline of Santaris Pharma.
Ref 2	N6-Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection. Cell Host Microbe. 2016 Nov 9;20(5):654-665. doi: 10.1016/j.chom.2016.09.015. Epub 2016 Oct 20.
Ref 3	Deciphering the "m(6)A Code" via Antibody-Independent Quantitative Profiling. Cell. 2019 Jul 25;178(3):731-747.e16. doi: 10.1016/j.cell.2019.06.013. Epub 2019 Jun 27.
Ref 4	Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites. Cell Rep. 2014 Jul 10;8(1):284-96. doi: 10.1016/j.celrep.2014.05.048. Epub 2014 Jun 26.
Ref 5	Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell. 2012 Jun 22;149(7):1635-46. doi: 10.1016/j.cell.2012.05.003. Epub 2012 May 17.
Ref 6	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.

m6A Target Gene Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

Visitor Map