General Information of the m6A Target Gene (ID: M6ATAR01050)
Target Name long intergenic non-protein coding RNA 294 (LINC00294)
Synonyms
NCRNA00294; non-protein coding RNA 294
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Gene Name LINC00294
Chromosomal Location 11p13
Gene ID 283267
HGNC ID
HGNC:27456
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Histone modification
m6A Regulator: YTH domain-containing protein 1 (YTHDC1)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT03490
Epigenetic Regulator Histone acetyltransferase p300 (P300)
Regulated Target Histone H3 lysine 18 lactylation (H3K18la)
Crosstalk relationship Histone modification → m6A
Disease Liver cancer
Non-coding RNA
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05756
Epigenetic Regulator Long intergenic non-protein coding RNA 294 (LINC00294)
Regulated Target YTH N6-methyladenosine RNA binding protein C1 (YTHDC1)
Crosstalk relationship m6A → ncRNA
Disease Liver cancer
m6A Regulator: YTH domain-containing protein 1 (YTHDC1)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05757
Epigenetic Regulator Long intergenic non-protein coding RNA 294 (LINC00294)
Regulated Target YTH N6-methyladenosine RNA binding protein C1 (YTHDC1)
Crosstalk relationship m6A → ncRNA
Disease Liver cancer
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01050)
long intergenic non-protein coding RNA 294 (LINC00294)
Adenosine-to-Inosine editing (A-to-I)
In total 1 m6A sequence/site(s) in this target gene
mod ID: A2ISITE004605 Click to Show/Hide the Full List
mod site chr11:33078580-33078581:+ [2]
Sequence TTTGCTGGTGAATTTCAAAGAGAATAGGTGTTTGCTGTTTG
Transcript ID List ENST00000528962.1; ENST00000527661.5; ENST00000631190.1
External Link RMBase: RNA-editing_site_21043
5-methylcytidine (m5C)
In total 14 m6A sequence/site(s) in this target gene
mod ID: M5CSITE005120 Click to Show/Hide the Full List
mod site chr11:33076977-33076978:+
Sequence TCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000631190.1; ENST00000528962.1; ENST00000527661.5
External Link RMBase: m5C_site_7206
mod ID: M5CSITE005121 Click to Show/Hide the Full List
mod site chr11:33076978-33076979:+
Sequence CGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTGT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000631190.1; ENST00000528962.1; ENST00000527661.5
External Link RMBase: m5C_site_7207
mod ID: M5CSITE005122 Click to Show/Hide the Full List
mod site chr11:33076980-33076981:+
Sequence TGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTGTAG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000631190.1; ENST00000527661.5; ENST00000528962.1
External Link RMBase: m5C_site_7208
mod ID: M5CSITE005123 Click to Show/Hide the Full List
mod site chr11:33076981-33076982:+
Sequence GATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTGTAGG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000528962.1; ENST00000631190.1; ENST00000527661.5
External Link RMBase: m5C_site_7209
mod ID: M5CSITE005124 Click to Show/Hide the Full List
mod site chr11:33076982-33076983:+
Sequence ATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTGTAGGC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000528962.1; ENST00000527661.5; ENST00000631190.1
External Link RMBase: m5C_site_7210
mod ID: M5CSITE005125 Click to Show/Hide the Full List
mod site chr11:33076989-33076990:+
Sequence CGCCTTGGCCTCCCAAAGTGCTGGGATTGTAGGCGTGAGCC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000528962.1; ENST00000527661.5; ENST00000631190.1
External Link RMBase: m5C_site_7211
mod ID: M5CSITE005126 Click to Show/Hide the Full List
mod site chr11:33077996-33077997:+
Sequence AATCCTAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List rmsk_3516259; ENST00000528962.1; ENST00000631190.1; ENST00000527661.5
External Link RMBase: m5C_site_7212
mod ID: M5CSITE005127 Click to Show/Hide the Full List
mod site chr11:33078130-33078131:+ [3]
Sequence AATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List rmsk_3516259; ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m5C_site_7213
mod ID: M5CSITE005128 Click to Show/Hide the Full List
mod site chr11:33078136-33078137:+ [3]
Sequence AGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000631190.1; ENST00000528962.1; ENST00000527661.5; rmsk_3516259
External Link RMBase: m5C_site_7214
mod ID: M5CSITE005129 Click to Show/Hide the Full List
mod site chr11:33078195-33078196:+
Sequence GAGCCGAGATTGCGCCATTGCACTCTAGCCTGGGTGACAGA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000527661.5; ENST00000528962.1; ENST00000631190.1; rmsk_3516259
External Link RMBase: m5C_site_7215
mod ID: M5CSITE005130 Click to Show/Hide the Full List
mod site chr11:33078197-33078198:+
Sequence GCCGAGATTGCGCCATTGCACTCTAGCCTGGGTGACAGAGC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000631190.1; ENST00000527661.5; ENST00000528962.1; rmsk_3516259
External Link RMBase: m5C_site_7216
mod ID: M5CSITE005131 Click to Show/Hide the Full List
mod site chr11:33078199-33078200:+
Sequence CGAGATTGCGCCATTGCACTCTAGCCTGGGTGACAGAGCGA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List rmsk_3516259; ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m5C_site_7217
mod ID: M5CSITE005132 Click to Show/Hide the Full List
mod site chr11:33078203-33078204:+
Sequence ATTGCGCCATTGCACTCTAGCCTGGGTGACAGAGCGAGACT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List rmsk_3516259; ENST00000527661.5; ENST00000631190.1; ENST00000528962.1
External Link RMBase: m5C_site_7218
mod ID: M5CSITE005133 Click to Show/Hide the Full List
mod site chr11:33078204-33078205:+
Sequence TTGCGCCATTGCACTCTAGCCTGGGTGACAGAGCGAGACTC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List rmsk_3516259; ENST00000631190.1; ENST00000527661.5; ENST00000528962.1
External Link RMBase: m5C_site_7219
N6-methyladenosine (m6A)
In total 32 m6A sequence/site(s) in this target gene
mod ID: M6ASITE004768 Click to Show/Hide the Full List
mod site chr11:33076162-33076163:+ [4]
Sequence ACCTCCATCAGTGAGATCAAACAAAACATACCCAATCAGTG
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; A549; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000631190.1; ENST00000527661.5; ENST00000528962.1
External Link RMBase: m6A_site_136200
mod ID: M6ASITE004769 Click to Show/Hide the Full List
mod site chr11:33076167-33076168:+ [4]
Sequence CATCAGTGAGATCAAACAAAACATACCCAATCAGTGAAGAA
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; A549; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000631190.1; ENST00000527661.5; ENST00000528962.1
External Link RMBase: m6A_site_136201
mod ID: M6ASITE004770 Click to Show/Hide the Full List
mod site chr11:33076226-33076227:+ [4]
Sequence AGCCATTGGGGGGCCAGAAGACCCTCATCCATATACCACCA
Motif Score 2.876744048
Cell/Tissue List HeLa; HEK293T; hNPCs; hESCs; A549; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m6A_site_136203
mod ID: M6ASITE004771 Click to Show/Hide the Full List
mod site chr11:33076260-33076261:+ [4]
Sequence ACCACCAGATAACCAGAAAAACAAAAACACTGCACAGCTGC
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; U2OS; hNPCs; hESCs; A549; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000528962.1; ENST00000527661.5; ENST00000631190.1
External Link RMBase: m6A_site_136204
mod ID: M6ASITE004772 Click to Show/Hide the Full List
mod site chr11:33076266-33076267:+ [4]
Sequence AGATAACCAGAAAAACAAAAACACTGCACAGCTGCGGGATC
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; hNPCs; A549; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000631190.1; ENST00000527661.5; ENST00000528962.1
External Link RMBase: m6A_site_136205
mod ID: M6ASITE004773 Click to Show/Hide the Full List
mod site chr11:33076297-33076298:+ [4]
Sequence CTGCGGGATCACCACACTGGACTCAAATACCATAGCCCAAT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000631190.1; ENST00000527661.5; ENST00000528962.1
External Link RMBase: m6A_site_136206
mod ID: M6ASITE004774 Click to Show/Hide the Full List
mod site chr11:33076363-33076364:+ [5]
Sequence TTTCCAGAGCTCTTCCAGGAACCGCCGGTCCACAAAGTTAT
Motif Score 2.930744048
Cell/Tissue List HEK293T; HeLa; A549; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m6A_site_136208
mod ID: M6ASITE004775 Click to Show/Hide the Full List
mod site chr11:33076410-33076411:+ [5]
Sequence AGGGCTGTTGCTCATACAAGACCCTCTGCCACTTTACCTCC
Motif Score 2.876744048
Cell/Tissue List HEK293T; HeLa; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000631190.1; ENST00000528962.1; ENST00000527661.5
External Link RMBase: m6A_site_136210
mod ID: M6ASITE004776 Click to Show/Hide the Full List
mod site chr11:33076545-33076546:+ [4]
Sequence TGATGACATTTTGAAATGAGACCTCCCTGGAAATTCCATGC
Motif Score 2.876744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000528962.1; ENST00000631190.1; ENST00000527661.5
External Link RMBase: m6A_site_136212
mod ID: M6ASITE004777 Click to Show/Hide the Full List
mod site chr11:33076859-33076860:+ [4]
Sequence CAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCAT
Motif Score 4.065041667
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m6A_site_136213
mod ID: M6ASITE004778 Click to Show/Hide the Full List
mod site chr11:33077285-33077286:+ [4]
Sequence ATTCTTCCTAAATCTCAAAAACTCTTCTTTTGTAAGAGTAG
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; A549; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m6A_site_136214
mod ID: M6ASITE004779 Click to Show/Hide the Full List
mod site chr11:33077363-33077364:+ [4]
Sequence ATTGCCAGAGTTCCATTTGGACCGTTTGAAATCTTGATGCA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; HepG2; U2OS; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m6A_site_136217
mod ID: M6ASITE004780 Click to Show/Hide the Full List
mod site chr11:33077403-33077404:+ [4]
Sequence ATGAATAACTGGCTTCACAGACTCTTGGCCGCCCACTACCT
Motif Score 3.319380952
Cell/Tissue List HeLa; HEK293T; A549; HepG2; U2OS; H1B; GM12878; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000527661.5; ENST00000631190.1; ENST00000528962.1
External Link RMBase: m6A_site_136218
mod ID: M6ASITE004781 Click to Show/Hide the Full List
mod site chr11:33077420-33077421:+ [6]
Sequence CAGACTCTTGGCCGCCCACTACCTCGGTGTCCACTGGTGGA
Motif Score 2.05802381
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000527661.5; ENST00000631190.1; ENST00000528962.1
External Link RMBase: m6A_site_136219
mod ID: M6ASITE004782 Click to Show/Hide the Full List
mod site chr11:33077479-33077480:+ [4]
Sequence GTCAAGAATGAAGGAAGCAAACTTCAGAACCACAATATTCA
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; A549; HepG2; U2OS; H1B; GM12878; HEK293A-TOA; iSLK; TIME; MSC
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000631190.1; ENST00000527661.5; ENST00000528962.1
External Link RMBase: m6A_site_136222
mod ID: M6ASITE004783 Click to Show/Hide the Full List
mod site chr11:33077487-33077488:+ [4]
Sequence TGAAGGAAGCAAACTTCAGAACCACAATATTCATATTGAAT
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T; HepG2; U2OS; H1B; A549; GM12878; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000631190.1; ENST00000528962.1; ENST00000527661.5
External Link RMBase: m6A_site_136223
mod ID: M6ASITE004784 Click to Show/Hide the Full List
mod site chr11:33077669-33077670:+ [4]
Sequence AGCTCTCCTTCCAAAACGAAACATCCTTTGGAGTGTGTTGT
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; HepG2; A549; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000631190.1; ENST00000527661.5; ENST00000528962.1
External Link RMBase: m6A_site_136224
mod ID: M6ASITE004785 Click to Show/Hide the Full List
mod site chr11:33077742-33077743:+ [4]
Sequence TTCAGTAACAGGTTGTGGAGACAAGTGTCTTTTCCTGAAAT
Motif Score 2.897386905
Cell/Tissue List HeLa; HEK293T; HepG2; A549; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m6A_site_136225
mod ID: M6ASITE004786 Click to Show/Hide the Full List
mod site chr11:33077804-33077805:+ [4]
Sequence CTTTACTACTTGTGGATAGAACTGAGAGTGAGGTCAGTATC
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; HepG2; A549; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000631190.1; ENST00000527661.5; ENST00000528962.1
External Link RMBase: m6A_site_136226
mod ID: M6ASITE004787 Click to Show/Hide the Full List
mod site chr11:33078033-33078034:+ [4]
Sequence CCTGAGGTCAGGAATTCGAAACCAGCCTTACCAACATGGCA
Motif Score 2.185083333
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000631190.1; rmsk_3516259; ENST00000528962.1; ENST00000527661.5
External Link RMBase: m6A_site_136227
mod ID: M6ASITE004788 Click to Show/Hide the Full List
mod site chr11:33078056-33078057:+ [4]
Sequence AGCCTTACCAACATGGCAAAACCCATCTCTATTAAAAATAC
Motif Score 2.185083333
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000527661.5; rmsk_3516259; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m6A_site_136228
mod ID: M6ASITE004789 Click to Show/Hide the Full List
mod site chr11:33078152-33078153:+ [4]
Sequence GAGGCAGGAGAATCACTTGAACCCTGGAGGTGGTGGTTGCA
Motif Score 2.930744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000528962.1; rmsk_3516259; ENST00000631190.1; ENST00000527661.5
External Link RMBase: m6A_site_136229
mod ID: M6ASITE004790 Click to Show/Hide the Full List
mod site chr11:33078221-33078222:+ [4]
Sequence AGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
Motif Score 3.319380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000527661.5; ENST00000528962.1; rmsk_3516259; ENST00000631190.1
External Link RMBase: m6A_site_136230
mod ID: M6ASITE004791 Click to Show/Hide the Full List
mod site chr11:33078330-33078331:+ [5]
Sequence ATGTACTTCAGGTAAGAAGGACACTGACATGATATCTTACT
Motif Score 3.643047619
Cell/Tissue List HEK293T
Seq Type List MeRIP-seq
Transcript ID List ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m6A_site_136231
mod ID: M6ASITE004792 Click to Show/Hide the Full List
mod site chr11:33078380-33078381:+ [5]
Sequence CAGTCAGTAGGTATATATGAACTTTTTTCTCTGTGAAGAAA
Motif Score 3.373380952
Cell/Tissue List HEK293T; A549
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000631190.1; ENST00000527661.5; ENST00000528962.1
External Link RMBase: m6A_site_136232
mod ID: M6ASITE004793 Click to Show/Hide the Full List
mod site chr11:33079038-33079039:+ [6]
Sequence TGAATGATAGAATGCTTTGTACATGGAAAAGGACTATACCT
Motif Score 2.856142857
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000528962.1; ENST00000527661.5; ENST00000631190.1; rmsk_3516261
External Link RMBase: m6A_site_136233
mod ID: M6ASITE004794 Click to Show/Hide the Full List
mod site chr11:33079082-33079083:+ [4]
Sequence TTTTTTAACTACAAAGGCGAACATGTAACCCTCTACCTGTG
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000527661.5; ENST00000631190.1; ENST00000528962.1
External Link RMBase: m6A_site_136234
mod ID: M6ASITE004795 Click to Show/Hide the Full List
mod site chr11:33079212-33079213:+ [7]
Sequence TCTTCCTGTCCTCTCCTAAGACTTGTTTATGTTCATCATCT
Motif Score 3.319380952
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000527661.5; ENST00000631190.1; ENST00000528962.1
External Link RMBase: m6A_site_136235
mod ID: M6ASITE004796 Click to Show/Hide the Full List
mod site chr11:33079275-33079276:+ [6]
Sequence TTACATTTGCTTACTTCCTGACATCCACCCCCACCCCAGTG
Motif Score 2.859755952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000631190.1; ENST00000528962.1; ENST00000527661.5
External Link RMBase: m6A_site_136236
mod ID: M6ASITE004797 Click to Show/Hide the Full List
mod site chr11:33079329-33079330:+ [7]
Sequence TCCACCTCTATATTATTTGAACTAAATGAATTCATGAATGA
Motif Score 3.373380952
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List rmsk_3516262; ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m6A_site_136237
mod ID: M6ASITE004798 Click to Show/Hide the Full List
mod site chr11:33079350-33079351:+ [7]
Sequence CTAAATGAATTCATGAATGAACAAATGAGTGGATGAATGAA
Motif Score 2.951386905
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000528962.1; ENST00000631190.1; rmsk_3516262; ENST00000527661.5
External Link RMBase: m6A_site_136238
mod ID: M6ASITE004799 Click to Show/Hide the Full List
mod site chr11:33079426-33079427:+ [7]
Sequence AGGCACTATCTCATTTAAAAACAATCTAAATAAATAACTAC
Motif Score 2.20572619
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000527661.5; ENST00000528962.1; ENST00000631190.1
External Link RMBase: m6A_site_136239