General Information of the m6A Target Gene (ID: M6ATAR00606)
Target Name Nucleolar protein 3 (ARC)
Synonyms
Apoptosis repressor with CARD; Muscle-enriched cytoplasmic protein; Myp; Nucleolar protein of 30 kDa; Nop30
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Gene Name ARC
Chromosomal Location 16q22.1
Function
May be involved in RNA splicing; Functions as an apoptosis repressor that blocks multiple modes of cell death. Inhibits extrinsic apoptotic pathways through two different ways. Firstly by interacting with FAS and FADD upon FAS activation blocking death-inducing signaling complex (DISC) assembly (By similarity). Secondly by interacting with CASP8 in a mitochondria localization- and phosphorylation-dependent manner, limiting the amount of soluble CASP8 available for DISC-mediated activation (By similarity). Inhibits intrinsic apoptotic pathway in response to a wide range of stresses, through its interaction with BAX resulting in BAX inactivation, preventing mitochondrial dysfunction and release of pro-apoptotic factors. Inhibits calcium-mediated cell death by functioning as a cytosolic calcium buffer, dissociating its interaction with CASP8 and maintaining calcium homeostasis. Negatively regulates oxidative stress-induced apoptosis by phosphorylation-dependent suppression of the mitochondria-mediated intrinsic pathway, by blocking CASP2 activation and BAX translocation (By similarity). Negatively regulates hypoxia-induced apoptosis in part by inhibiting the release of cytochrome c from mitochondria in a caspase-independent manner (By similarity). Also inhibits TNF-induced necrosis by preventing TNF-signaling pathway through TNFRSF1A interaction abrogating the recruitment of RIPK1 to complex I (By similarity). Finally through its role as apoptosis repressor, promotes vascular remodeling through inhibition of apoptosis and stimulation of proliferation, in response to hypoxia (By similarity). Inhibits too myoblast differentiation through caspase inhibition (By similarity).
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Gene ID 8996
Uniprot ID
NOL3_HUMAN
HGNC ID
HGNC:7869
KEGG ID
hsa:8996
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
ARC can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
Methyltransferase-like 3 (METTL3) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by METTL3
Cell Line Embryonic stem cells Mus musculus
Treatment: METTL3 knockout ESCs
Control: Wild type ESCs
GSE146466
Regulation
logFC: 1.50E+00
p-value: 1.12E-06
More Results Click to View More RNA-seq Results
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary METTL3 rescues the A-Bete-induced reduction of Nucleolar protein 3 (ARC) expression via YTHDF1-Dependent m6A modification, which suggests an important mechanism of epigenetic alteration in AD.
Target Regulation Up regulation
Responsed Disease Alzheimer disease ICD-11: 8A20
In-vitro Model SH-SY5Y Neuroblastoma Homo sapiens CVCL_0019
YTH domain-containing family protein 1 (YTHDF1) [READER]
Representative RNA-seq result indicating the expression of this target gene regulated by YTHDF1
Cell Line AGS cell line Homo sapiens
Treatment: shYTHDF1 AGS
Control: shControl AGS
GSE159425
Regulation
logFC: 8.08E-01
p-value: 1.08E-05
More Results Click to View More RNA-seq Results
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary METTL3 rescues the A-Bete-induced reduction of Nucleolar protein 3 (ARC) expression via YTHDF1-Dependent m6A modification, which suggests an important mechanism of epigenetic alteration in AD.
Target Regulation Up regulation
Responsed Disease Alzheimer disease ICD-11: 8A20
In-vitro Model SH-SY5Y Neuroblastoma Homo sapiens CVCL_0019
Alzheimer disease [ICD-11: 8A20]
In total 2 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary METTL3 rescues the A-Bete-induced reduction of Nucleolar protein 3 (ARC) expression via YTHDF1-Dependent m6A modification, which suggests an important mechanism of epigenetic alteration in AD.
Responsed Disease Alzheimer disease [ICD-11: 8A20]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
In-vitro Model SH-SY5Y Neuroblastoma Homo sapiens CVCL_0019
Experiment 2 Reporting the m6A-centered Disease Response [1]
Response Summary METTL3 rescues the A-Bete-induced reduction of Nucleolar protein 3 (ARC) expression via YTHDF1-Dependent m6A modification, which suggests an important mechanism of epigenetic alteration in AD.
Responsed Disease Alzheimer disease [ICD-11: 8A20]
Target Regulator YTH domain-containing family protein 1 (YTHDF1) READER
Target Regulation Up regulation
In-vitro Model SH-SY5Y Neuroblastoma Homo sapiens CVCL_0019
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Histone modification
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT03530
Epigenetic Regulator Lysine-specific histone demethylase 1A (KDM1A)
Regulated Target Histone H3 lysine 9 trimethylation (H3K9me3)
Crosstalk relationship Histone modification → m6A
Disease Alzheimer disease
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00606)
Nucleolar protein 3 (ARC)
5-methylcytidine (m5C)
In total 2 m6A sequence/site(s) in this target gene
mod ID: M5CSITE004368 Click to Show/Hide the Full List
mod site chr8:142611632-142611633:-
Sequence TGGCCGCCAGCTGCCCGTCCCCAGAGCCACTGCAGCAGGAG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m5C_site_41849
mod ID: M5CSITE004369 Click to Show/Hide the Full List
mod site chr8:142611768-142611769:-
Sequence CTGCGTGGGAGGCGAAGTCCCAGGACAGCCCAGAGGGGGGC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m5C_site_41850
N6-methyladenosine (m6A)
In total 34 m6A sequence/site(s) in this target gene
mod ID: M6ASITE087282 Click to Show/Hide the Full List
mod site chr8:142611313-142611314:- [2]
Sequence CTGGGGGACCAGCCCTGCAGACCACTCTGACAAGTCTTCAG
Motif Score 2.876744048
Cell/Tissue List TREX
Seq Type List MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811501
mod ID: M6ASITE087283 Click to Show/Hide the Full List
mod site chr8:142611326-142611327:- [2]
Sequence TCTGCCTTGTCCACTGGGGGACCAGCCCTGCAGACCACTCT
Motif Score 3.622404762
Cell/Tissue List TREX
Seq Type List MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811502
mod ID: M6ASITE087284 Click to Show/Hide the Full List
mod site chr8:142611410-142611411:- [3]
Sequence TGCCCTGCCCCGACACCAGAACCCTGGTGCTGGTGGGCCAC
Motif Score 2.930744048
Cell/Tissue List GSC-11; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811503
mod ID: M6ASITE087285 Click to Show/Hide the Full List
mod site chr8:142611472-142611473:- [3]
Sequence TGAGCTCAGCTGCAGGAAGGACATCCCAGAAGCCATGGCTC
Motif Score 3.643047619
Cell/Tissue List GSC-11; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811504
mod ID: M6ASITE087286 Click to Show/Hide the Full List
mod site chr8:142611582-142611583:- [4]
Sequence GCCTCCCTCCCAGCAGGGAAACCCCGCCCGCTGCCAGGCCA
Motif Score 2.185083333
Cell/Tissue List Jurkat; GSC-11; endometrial; GSCs
Seq Type List m6A-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811505
mod ID: M6ASITE087287 Click to Show/Hide the Full List
mod site chr8:142611681-142611682:- [4]
Sequence CCCTGAGCGCCAGCGCGAGGACCAGGGCCTGCCACTAAGCC
Motif Score 3.622404762
Cell/Tissue List Jurkat; GSC-11; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811506
mod ID: M6ASITE087288 Click to Show/Hide the Full List
mod site chr8:142611764-142611765:- [3]
Sequence GTGGGAGGCGAAGTCCCAGGACAGCCCAGAGGGGGGCTACA
Motif Score 3.643047619
Cell/Tissue List GSC-11; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811507
mod ID: M6ASITE087289 Click to Show/Hide the Full List
mod site chr8:142612079-142612080:- [3]
Sequence AGCACCACCCTTCCACCCAGACCCCACCATCAGCTGTCCCG
Motif Score 2.876744048
Cell/Tissue List GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000356613.4; ENST00000581404.1
External Link RMBase: m6A_site_811508
mod ID: M6ASITE087290 Click to Show/Hide the Full List
mod site chr8:142612514-142612515:- [3]
Sequence TCGCACACGCAGCAGAGCAGACCTGATGTCCCGGTGCTTCC
Motif Score 2.876744048
Cell/Tissue List GSC-11; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4; ENST00000581404.1
External Link RMBase: m6A_site_811509
mod ID: M6ASITE087291 Click to Show/Hide the Full List
mod site chr8:142612701-142612702:- [5]
Sequence GCGGCCACCAAGCTCATGGGACACCCAGAGCAGAAGCTAGG
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; H1A; H1B; hESCs; GSC-11; HEK293A-TOA; MSC; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4; ENST00000581404.1
External Link RMBase: m6A_site_811510
mod ID: M6ASITE087292 Click to Show/Hide the Full List
mod site chr8:142612747-142612748:- [6]
Sequence GCCCTCTGGACATCCAGAAAACCAAGTGTCCGGATGGCAGG
Motif Score 2.185083333
Cell/Tissue List HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GSC-11; HEK293A-TOA; MSC; TREX; endometrial; GSCs
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811511
mod ID: M6ASITE087293 Click to Show/Hide the Full List
mod site chr8:142612758-142612759:- [6]
Sequence ACAACACCCAGGCCCTCTGGACATCCAGAAAACCAAGTGTC
Motif Score 3.643047619
Cell/Tissue List HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GSC-11; HEK293A-TOA; MSC; TREX; endometrial; GSCs
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811512
mod ID: M6ASITE087294 Click to Show/Hide the Full List
mod site chr8:142612775-142612776:- [7]
Sequence AGCTTCCTCATTCTGCTACAACACCCAGGCCCTCTGGACAT
Motif Score 2.173910714
Cell/Tissue List CD8T
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811513
mod ID: M6ASITE087295 Click to Show/Hide the Full List
mod site chr8:142612802-142612803:- [6]
Sequence CACTCTCAGGCCATCACAGAACACCCCAGCTTCCTCATTCT
Motif Score 2.951386905
Cell/Tissue List HEK293T; U2OS; H1A; H1B; hESCs; GSC-11; HEK293A-TOA; MSC; TREX; GSCs
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811514
mod ID: M6ASITE087296 Click to Show/Hide the Full List
mod site chr8:142612835-142612836:- [6]
Sequence CGTCTGTCTTTCCGGCCTGGACCCCACCCTCCACACTCTCA
Motif Score 3.622404762
Cell/Tissue List HEK293T; U2OS; H1A; H1B; hESCs; Jurkat; GSC-11; HEK293A-TOA; MSC; TREX; endometrial; GSCs
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811515
mod ID: M6ASITE087297 Click to Show/Hide the Full List
mod site chr8:142612947-142612948:- [5]
Sequence CCCCCTCGAGCTCCGGGCGGACTCGCACACACTCGTGTCAT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; U2OS; H1A; H1B; Jurkat; GSC-11; HEK293A-TOA; MSC; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811516
mod ID: M6ASITE087298 Click to Show/Hide the Full List
mod site chr8:142613019-142613020:- [5]
Sequence CTGTGGCTTTGCCCACCAGGACTTTTGAGCTGGGGCTGACT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; U2OS; H1A; H1B; hESCs; Jurkat; GSC-11; HEK293A-TOA; MSC; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811517
mod ID: M6ASITE087299 Click to Show/Hide the Full List
mod site chr8:142613094-142613095:- [5]
Sequence AGTCCGTGGCCAGTGACCGGACCCAGCCCGAGTAGAGGGCA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; U2OS; H1B; H1A; Jurkat; GSC-11; HEK293A-TOA; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811518
mod ID: M6ASITE087300 Click to Show/Hide the Full List
mod site chr8:142613139-142613140:- [5]
Sequence CGGTGGAGGATGAGGCGGAGACCCTCACGCCCGCCCCCAAC
Motif Score 2.876744048
Cell/Tissue List HeLa; HEK293T; U2OS; Jurkat; GSC-11; HEK293A-TOA; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811519
mod ID: M6ASITE087301 Click to Show/Hide the Full List
mod site chr8:142613241-142613242:- [3]
Sequence TGCGCCACCCCCTGCCCAAGACCCTGGAGCAGCTCATCCAG
Motif Score 2.876744048
Cell/Tissue List GSC-11; HEK293A-TOA; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811520
mod ID: M6ASITE087302 Click to Show/Hide the Full List
mod site chr8:142613351-142613352:- [3]
Sequence GTTCCTGTGGCGCAAGCGGGACCTGTACCAGACGCTCTACG
Motif Score 3.622404762
Cell/Tissue List GSC-11; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811521
mod ID: M6ASITE087303 Click to Show/Hide the Full List
mod site chr8:142613375-142613376:- [8]
Sequence GAAGCAGGGCGAGCCGCTGGACCAGTTCCTGTGGCGCAAGC
Motif Score 3.622404762
Cell/Tissue List HEK293T; GSC-11; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811522
mod ID: M6ASITE087304 Click to Show/Hide the Full List
mod site chr8:142613405-142613406:- [8]
Sequence GGCCATCCAGCGCGAGCTGGACCTGCCGCAGAAGCAGGGCG
Motif Score 3.622404762
Cell/Tissue List HEK293T; GSC-11; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811523
mod ID: M6ASITE087305 Click to Show/Hide the Full List
mod site chr8:142613483-142613484:- [8]
Sequence CAAGCAGGGCTCCGTGAAGAACTGGGTGGAGTTCAAGAAGG
Motif Score 3.373380952
Cell/Tissue List HEK293T; GSC-11; TREX; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811524
mod ID: M6ASITE087306 Click to Show/Hide the Full List
mod site chr8:142613624-142613625:- [3]
Sequence GGACACGCAGATCTTCGAGGACCCTCGAGAGTTCCTGAGCC
Motif Score 3.622404762
Cell/Tissue List HEK293T; GSC-11; HEK293A-TOA; TREX; GSCs
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811525
mod ID: M6ASITE087307 Click to Show/Hide the Full List
mod site chr8:142613642-142613643:- [4]
Sequence GCAGCCCAGCCCCGGCGTGGACACGCAGATCTTCGAGGACC
Motif Score 3.643047619
Cell/Tissue List HEK293T; Jurkat; GSC-11; HEK293A-TOA; TREX; GSCs
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811526
mod ID: M6ASITE087308 Click to Show/Hide the Full List
mod site chr8:142613970-142613971:- [3]
Sequence GCCTGTGCCGCTGCCAGGAGACCATCGCCAACCTGGAGCGC
Motif Score 2.876744048
Cell/Tissue List GSC-11; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811527
mod ID: M6ASITE087309 Click to Show/Hide the Full List
mod site chr8:142614252-142614253:- [4]
Sequence AGATGGAGCTGGACCACCGGACCAGCGGCGGGCTCCACGCC
Motif Score 3.622404762
Cell/Tissue List Jurkat; GSC-11; TREX; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811528
mod ID: M6ASITE087310 Click to Show/Hide the Full List
mod site chr8:142614260-142614261:- [4]
Sequence CTGCGCACAGATGGAGCTGGACCACCGGACCAGCGGCGGGC
Motif Score 3.622404762
Cell/Tissue List Jurkat; GSC-11; TREX; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811529
mod ID: M6ASITE087311 Click to Show/Hide the Full List
mod site chr8:142614325-142614326:- [4]
Sequence CCGCCGGACCCCAGCGCCGGACCACCCTCTGTCCGCCCCGA
Motif Score 3.622404762
Cell/Tissue List Jurkat; GSC-11; HEK293T; TREX; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811530
mod ID: M6ASITE087312 Click to Show/Hide the Full List
mod site chr8:142614338-142614339:- [4]
Sequence CACGGGACCCAGGCCGCCGGACCCCAGCGCCGGACCACCCT
Motif Score 3.622404762
Cell/Tissue List Jurkat; GSC-11; HEK293T; TREX; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811531
mod ID: M6ASITE087313 Click to Show/Hide the Full List
mod site chr8:142614352-142614353:- [4]
Sequence TCCCCGCAGCTCCGCACGGGACCCAGGCCGCCGGACCCCAG
Motif Score 3.622404762
Cell/Tissue List Jurkat; GSC-11; HEK293T; TREX; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811532
mod ID: M6ASITE087314 Click to Show/Hide the Full List
mod site chr8:142614380-142614381:- [6]
Sequence CCGCCGGCCCGCAGCGACAGACAGGCGCTCCCCGCAGCTCC
Motif Score 2.897386905
Cell/Tissue List U2OS; GSC-11; HEK293T; TREX; GSCs
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811533
mod ID: M6ASITE087315 Click to Show/Hide the Full List
mod site chr8:142614433-142614434:- [3]
Sequence CTCCGCAGCAGCCGAGCCGGACCTGCCTCCCCGGGCGTGCT
Motif Score 3.622404762
Cell/Tissue List GSC-11; HEK293T; TREX; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356613.4
External Link RMBase: m6A_site_811534