General Information of the m6A Target Gene (ID: M6ATAR00276)
Target Name High mobility group protein HMGI-C (HMGA2)
Synonyms
High mobility group AT-hook protein 2; HMGIC
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Gene Name HMGA2
Chromosomal Location 12q14.3
Family HMGA family
Function
Functions as a transcriptional regulator. Functions in cell cycle regulation through CCNA2. Plays an important role in chromosome condensation during the meiotic G2/M transition of spermatocytes. Plays a role in postnatal myogenesis, is involved in satellite cell activation (By similarity). Positively regulates IGF2 expression through PLAG1 and in a PLAG1-independent manner.
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Gene ID 8091
Uniprot ID
HMGA2_HUMAN
HGNC ID
HGNC:5009
KEGG ID
hsa:8091
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
HMGA2 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
Methyltransferase-like 3 (METTL3) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by METTL3
Cell Line LX2 cell line Homo sapiens
Treatment: shMETTL3 LX2 cells
Control: shLuc LX2 cells
GSE207909
Regulation
logFC: 4.44E+00
p-value: 5.85E-138
More Results Click to View More RNA-seq Results
Representative RIP-seq result supporting the interaction between HMGA2 and the regulator
Cell Line MDA-MB-231 Homo sapiens
Regulation logFC: 1.68E+00 GSE60213
In total 2 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary In hepatocellular carcinoma, METTL3 could direct the formation of circHPS5, and specific m6A controlled the accumulation of circHPS5. YTHDC1 facilitated the cytoplasmic output of circHPS5 under m6A modification. CircHPS5 can act as a miR-370 sponge to regulate the expression of High mobility group protein HMGI-C (HMGA2) and further accelerate hepatocellular carcinoma cell tumorigenesis.
Target Regulation Up regulation
Responsed Disease Hepatocellular carcinoma ICD-11: 2C12.02
Pathway Response Transcriptional misregulation in cancer hsa05202
Cell Process Epithelial-mesenchymal transition
Cell autophagy
In-vitro Model Hep 3B2.1-7 Childhood hepatocellular carcinoma Homo sapiens CVCL_0326
L-02 Endocervical adenocarcinoma Homo sapiens CVCL_6926
In-vivo Model To create the xenograft neoplasm system, 40 male BALB/c nude mice aged 5 weeks were randomly separated into sh-NC, sh-circHPS5, sh-circHPS5+CTRL, and sh-circHPS5+SAH groups (n = 5 for each group). HCC cells were subcutaneously injected into the axilla of the nude mice.
Experiment 2 Reporting the m6A Methylation Regulator of This Target Gene [2]
Response Summary Silencing METTL3 down-regulate MALAT1 and High mobility group protein HMGI-C (HMGA2) by sponging miR-26b, and finally inhibit EMT, migration and invasion in BC, providing a theoretical basis for clinical treatment of BC.
Target Regulation Up regulation
Responsed Disease Breast cancer ICD-11: 2C60
Cell Process Epithelial-mesenchymal transition
In-vitro Model MDA-MB-468 Breast adenocarcinoma Homo sapiens CVCL_0419
MDA-MB-231 Breast adenocarcinoma Homo sapiens CVCL_0062
MCF-7 Invasive breast carcinoma Homo sapiens CVCL_0031
MCF-10A Normal Homo sapiens CVCL_0598
In-vivo Model Eighteen BALB/C female nude mice aged 4-5 weeks and weighing 15-18 g were randomly assigned into three groups of six mice. The MCF-7 cell lines stably transfected with sh-NC + oe-NC, sh-METTL3 + oe-NC and sh-METTL3 + oe-HMGA2 were selected for subcutaneous establishment of the BC cell line MCF-7 as xenografts in the nude mice. For this purpose, MCF-7 cell lines in the logarithmic growth stage were prepared into a suspension with a concentration of about 1 × 107 cells/ml. The prepared cell suspension was injected into the left armpit of the mice, and the subsequent tumor growth was recorded.
YTH domain-containing protein 1 (YTHDC1) [READER]
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary In hepatocellular carcinoma, METTL3 could direct the formation of circHPS5, and specific m6A controlled the accumulation of circHPS5. YTHDC1 facilitated the cytoplasmic output of circHPS5 under m6A modification. CircHPS5 can act as a miR-370 sponge to regulate the expression of High mobility group protein HMGI-C (HMGA2) and further accelerate hepatocellular carcinoma cell tumorigenesis.
Target Regulation Up regulation
Responsed Disease Hepatocellular carcinoma ICD-11: 2C12.02
Pathway Response Transcriptional misregulation in cancer hsa05202
Cell Process Epithelial-mesenchymal transition
Cell autophagy
In-vitro Model Hep 3B2.1-7 Childhood hepatocellular carcinoma Homo sapiens CVCL_0326
L-02 Endocervical adenocarcinoma Homo sapiens CVCL_6926
In-vivo Model To create the xenograft neoplasm system, 40 male BALB/c nude mice aged 5 weeks were randomly separated into sh-NC, sh-circHPS5, sh-circHPS5+CTRL, and sh-circHPS5+SAH groups (n = 5 for each group). HCC cells were subcutaneously injected into the axilla of the nude mice.
Liver cancer [ICD-11: 2C12]
In total 2 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary In hepatocellular carcinoma, METTL3 could direct the formation of circHPS5, and specific m6A controlled the accumulation of circHPS5. YTHDC1 facilitated the cytoplasmic output of circHPS5 under m6A modification. CircHPS5 can act as a miR-370 sponge to regulate the expression of High mobility group protein HMGI-C (HMGA2) and further accelerate hepatocellular carcinoma cell tumorigenesis.
Responsed Disease Hepatocellular carcinoma [ICD-11: 2C12.02]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
Pathway Response Transcriptional misregulation in cancer hsa05202
Cell Process Epithelial-mesenchymal transition
Cell autophagy
In-vitro Model Hep 3B2.1-7 Childhood hepatocellular carcinoma Homo sapiens CVCL_0326
L-02 Endocervical adenocarcinoma Homo sapiens CVCL_6926
In-vivo Model To create the xenograft neoplasm system, 40 male BALB/c nude mice aged 5 weeks were randomly separated into sh-NC, sh-circHPS5, sh-circHPS5+CTRL, and sh-circHPS5+SAH groups (n = 5 for each group). HCC cells were subcutaneously injected into the axilla of the nude mice.
Experiment 2 Reporting the m6A-centered Disease Response [1]
Response Summary In hepatocellular carcinoma, METTL3 could direct the formation of circHPS5, and specific m6A controlled the accumulation of circHPS5. YTHDC1 facilitated the cytoplasmic output of circHPS5 under m6A modification. CircHPS5 can act as a miR-370 sponge to regulate the expression of High mobility group protein HMGI-C (HMGA2) and further accelerate hepatocellular carcinoma cell tumorigenesis.
Responsed Disease Hepatocellular carcinoma [ICD-11: 2C12.02]
Target Regulator YTH domain-containing protein 1 (YTHDC1) READER
Target Regulation Up regulation
Pathway Response Transcriptional misregulation in cancer hsa05202
Cell Process Epithelial-mesenchymal transition
Cell autophagy
In-vitro Model Hep 3B2.1-7 Childhood hepatocellular carcinoma Homo sapiens CVCL_0326
L-02 Endocervical adenocarcinoma Homo sapiens CVCL_6926
In-vivo Model To create the xenograft neoplasm system, 40 male BALB/c nude mice aged 5 weeks were randomly separated into sh-NC, sh-circHPS5, sh-circHPS5+CTRL, and sh-circHPS5+SAH groups (n = 5 for each group). HCC cells were subcutaneously injected into the axilla of the nude mice.
Breast cancer [ICD-11: 2C60]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [2]
Response Summary Silencing METTL3 down-regulate MALAT1 and High mobility group protein HMGI-C (HMGA2) by sponging miR-26b, and finally inhibit EMT, migration and invasion in BC, providing a theoretical basis for clinical treatment of BC.
Responsed Disease Breast cancer [ICD-11: 2C60]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
Cell Process Epithelial-mesenchymal transition
In-vitro Model MDA-MB-468 Breast adenocarcinoma Homo sapiens CVCL_0419
MDA-MB-231 Breast adenocarcinoma Homo sapiens CVCL_0062
MCF-7 Invasive breast carcinoma Homo sapiens CVCL_0031
MCF-10A Normal Homo sapiens CVCL_0598
In-vivo Model Eighteen BALB/C female nude mice aged 4-5 weeks and weighing 15-18 g were randomly assigned into three groups of six mice. The MCF-7 cell lines stably transfected with sh-NC + oe-NC, sh-METTL3 + oe-NC and sh-METTL3 + oe-HMGA2 were selected for subcutaneous establishment of the BC cell line MCF-7 as xenografts in the nude mice. For this purpose, MCF-7 cell lines in the logarithmic growth stage were prepared into a suspension with a concentration of about 1 × 107 cells/ml. The prepared cell suspension was injected into the left armpit of the mice, and the subsequent tumor growth was recorded.
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
RNA modification
m6A Regulator: ELAV-like protein 1 (ELAVL1)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00465
Epigenetic Regulator Interferon-inducible protein 4 (ADAR1)
Regulated Target MicroRNA 149 (MIR149)
Crosstalk relationship A-to-I → m6A
Crosstalk ID: M6ACROT00466
Epigenetic Regulator Methyltransferase-like protein 1 (METTL1)
Regulated Target MicroRNA 149 (MIR149)
Crosstalk relationship m7G → m6A
m6A Regulator: Methyltransferase-like 14 (METTL14)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00467
Epigenetic Regulator Interferon-inducible protein 4 (ADAR1)
Regulated Target MicroRNA 149 (MIR149)
Crosstalk relationship A-to-I → m6A
Crosstalk ID: M6ACROT00468
Epigenetic Regulator Methyltransferase-like protein 1 (METTL1)
Regulated Target MicroRNA 149 (MIR149)
Crosstalk relationship m7G → m6A
Histone modification
m6A Regulator: YTH domain-containing protein 1 (YTHDC1)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT03485
Epigenetic Regulator Histone acetyltransferase p300 (P300)
Regulated Target Histone H3 lysine 18 lactylation (H3K18la)
Crosstalk relationship Histone modification → m6A
Disease Liver cancer
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00276)
High mobility group protein HMGI-C (HMGA2)
5-methylcytidine (m5C)
In total 5 m6A sequence/site(s) in this target gene
mod ID: M5CSITE000072 Click to Show/Hide the Full List
mod site chr12:65840305-65840306:+
Sequence GGCAGGGTAGAGCAGAAAGTCTTGTCTCTGCTCCATGATGT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000393578.7; ENST00000537429.5; ENST00000403681.6; ENST00000539662.1; ENST00000541363.5; ENST00000425208.6; ENST00000536545.5; ENST00000354636.7; ENST00000393577.7; ENST00000537275.5
External Link RMBase: m5C_site_10596
mod ID: M5CSITE000073 Click to Show/Hide the Full List
mod site chr12:65881887-65881888:+
Sequence AGAGGTGGCCCGAGAGAGCCCCGGTAGGTCCCGGAGTATGT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000425208.6; ENST00000393577.7; ENST00000536545.5; ENST00000354636.7; ENST00000541363.5; ENST00000537429.5; ENST00000539662.1; ENST00000403681.6
External Link RMBase: m5C_site_10597
mod ID: M5CSITE000074 Click to Show/Hide the Full List
mod site chr12:65882120-65882121:+
Sequence GGCTGTACTGACAAAAGCAACCTTAGTCAATGACAGAGCTG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000393577.7; ENST00000541363.5; ENST00000403681.6; ENST00000536545.5; ENST00000354636.7; ENST00000425208.6; ENST00000539662.1
External Link RMBase: m5C_site_10598
mod ID: M5CSITE000075 Click to Show/Hide the Full List
mod site chr12:65964524-65964525:+
Sequence TGCACTTTTAGCCAGAGATGCAATATATCCCCACTACTCAA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m5C_site_10599
mod ID: M5CSITE000076 Click to Show/Hide the Full List
mod site chr12:65965837-65965838:+
Sequence TCTTAAGTCCCAGTATACCTCATTTTTCATACTGAAAAAAA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m5C_site_10600
N6-methyladenosine (m6A)
In total 63 m6A sequence/site(s) in this target gene
mod ID: M6ASITE013755 Click to Show/Hide the Full List
mod site chr12:65824478-65824479:+ [6]
Sequence ACTTGAATCTTGGGGCAGGAACTCAGAAAACTTCCAGCCCG
Motif Score 3.373380952
Cell/Tissue List HepG2; HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; A549; H1299; Huh7; GSC-11; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000537275.5; ENST00000403681.6; ENST00000537429.5; ENST00000393578.7; ENST00000536545.5; ENST00000354636.7; ENST00000425208.6
External Link RMBase: m6A_site_197400
mod ID: M6ASITE013756 Click to Show/Hide the Full List
mod site chr12:65824487-65824488:+ [6]
Sequence TTGGGGCAGGAACTCAGAAAACTTCCAGCCCGGGCAGCGCG
Motif Score 2.627720238
Cell/Tissue List HepG2; HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; A549; H1299; Huh7; GSC-11; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000536545.5; ENST00000403681.6; ENST00000537275.5; ENST00000393578.7; ENST00000537429.5; ENST00000354636.7; ENST00000425208.6
External Link RMBase: m6A_site_197401
mod ID: M6ASITE013757 Click to Show/Hide the Full List
mod site chr12:65824521-65824522:+ [7]
Sequence CAGCGCGCGCTTGGTGCAAGACTCAGGAGCTAGCAGCCCGT
Motif Score 3.319380952
Cell/Tissue List HeLa; HepG2; HEK293T; U2OS; H1B; hESCs; fibroblasts; A549; H1299; Huh7; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000536545.5; ENST00000537275.5; ENST00000425208.6; ENST00000403681.6; ENST00000354636.7; ENST00000537429.5; ENST00000393578.7
External Link RMBase: m6A_site_197402
mod ID: M6ASITE013758 Click to Show/Hide the Full List
mod site chr12:65824823-65824824:+ [7]
Sequence CCCGCCTAACATTTCAAGGGACACAATTCACTCCAAGTCTC
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; U2OS; H1A; fibroblasts; Huh7; GSC-11; iSLK; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000403681.6; ENST00000354636.7; ENST00000545998.1; ENST00000536545.5; ENST00000537275.5; ENST00000393578.7; ENST00000425208.6; ENST00000537429.5
External Link RMBase: m6A_site_197403
mod ID: M6ASITE013759 Click to Show/Hide the Full List
mod site chr12:65825320-65825321:+ [7]
Sequence CCGTCCACTTCAGCCCAGGGACAACCTGCCGCCCCAGCGCC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; hESC-HEK293T; U2OS; H1299; GSC-11; iSLK; MSC; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000545998.1; ENST00000537429.5; ENST00000393577.7; ENST00000537275.5; ENST00000425208.6; ENST00000393578.7; ENST00000541363.5; ENST00000536545.5; ENST00000354636.7; ENST00000403681.6
External Link RMBase: m6A_site_197404
mod ID: M6ASITE013760 Click to Show/Hide the Full List
mod site chr12:65828002-65828003:+ [7]
Sequence TTTTTCCCTCACAATTAGGAACCAACCGGTGAGCCCTCTCC
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; U2OS; hNPCs; fibroblasts; H1299; GSC-11; HEK293T; iSLK; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000425208.6; ENST00000354636.7; ENST00000545998.1; ENST00000541363.5; ENST00000403681.6; ENST00000537275.5; ENST00000539662.1; ENST00000537429.5; ENST00000536545.5; ENST00000393577.7; ENST00000393578.7
External Link RMBase: m6A_site_197406
mod ID: M6ASITE013761 Click to Show/Hide the Full List
mod site chr12:65828029-65828030:+ [7]
Sequence GGTGAGCCCTCTCCTAAGAGACCCAGGGGAAGACCCAAAGG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; U2OS; hNPCs; fibroblasts; H1299; Huh7; GSC-11; HEK293T; iSLK; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000536545.5; ENST00000537275.5; ENST00000545998.1; ENST00000541363.5; ENST00000403681.6; ENST00000393577.7; ENST00000539662.1; ENST00000393578.7; ENST00000537429.5; ENST00000354636.7; ENST00000425208.6
External Link RMBase: m6A_site_197407
mod ID: M6ASITE013762 Click to Show/Hide the Full List
mod site chr12:65828041-65828042:+ [7]
Sequence CCTAAGAGACCCAGGGGAAGACCCAAAGGCAGCAAAAACAA
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; U2OS; hNPCs; fibroblasts; H1299; Huh7; GSC-11; HEK293T; iSLK; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000403681.6; ENST00000541363.5; ENST00000536545.5; ENST00000425208.6; ENST00000537429.5; ENST00000539662.1; ENST00000354636.7; ENST00000537275.5; ENST00000393578.7; ENST00000393577.7; ENST00000545998.1
External Link RMBase: m6A_site_197408
mod ID: M6ASITE013763 Click to Show/Hide the Full List
mod site chr12:65828058-65828059:+ [7]
Sequence AAGACCCAAAGGCAGCAAAAACAAGAGTCCCTCTAAAGCAG
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; hESC-HEK293T; U2OS; hNPCs; fibroblasts; H1299; Huh7; GSC-11; iSLK; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000541363.5; ENST00000536545.5; ENST00000393578.7; ENST00000537429.5; ENST00000425208.6; ENST00000354636.7; ENST00000403681.6; ENST00000539662.1; ENST00000537275.5; ENST00000545998.1; ENST00000393577.7
External Link RMBase: m6A_site_197409
mod ID: M6ASITE013764 Click to Show/Hide the Full List
mod site chr12:65828205-65828206:+ [7]
Sequence TCCCAACTGGGTAACACAAGACTCATTTCTTACATTTAACA
Motif Score 3.319380952
Cell/Tissue List HeLa; U2OS; H1299
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000537429.5; ENST00000545998.1; ENST00000536545.5; ENST00000537275.5; ENST00000393577.7; ENST00000541363.5; ENST00000403681.6; ENST00000354636.7; ENST00000539662.1; ENST00000393578.7; ENST00000425208.6
External Link RMBase: m6A_site_197410
mod ID: M6ASITE013765 Click to Show/Hide the Full List
mod site chr12:65830919-65830920:+ [8]
Sequence CTACTTAATATTCCATTAAAACTAATTACTATGCATGACCA
Motif Score 2.627720238
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000615897.1; ENST00000537275.5; ENST00000393577.7; ENST00000537429.5; ENST00000536545.5; ENST00000425208.6; ENST00000354636.7; ENST00000393578.7; ENST00000403681.6; ENST00000539662.1; ENST00000541363.5
External Link RMBase: m6A_site_197411
mod ID: M6ASITE013766 Click to Show/Hide the Full List
mod site chr12:65830969-65830970:+ [8]
Sequence GATTCTAGTCATTCCTCAGAACTCCAATCTGAGTGCTCAAA
Motif Score 3.373380952
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000393577.7; ENST00000537429.5; ENST00000393578.7; ENST00000539662.1; ENST00000354636.7; ENST00000403681.6; ENST00000425208.6; ENST00000536545.5; ENST00000541363.5; ENST00000615897.1; ENST00000537275.5
External Link RMBase: m6A_site_197412
mod ID: M6ASITE013767 Click to Show/Hide the Full List
mod site chr12:65838556-65838557:+ [9]
Sequence GAAAAACGGCCAAGAGGCAGACCTAGGAAATGGGTGAGTAA
Motif Score 2.876744048
Cell/Tissue List H1A; hNPCs; H1299; Huh7; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000354636.7; ENST00000403681.6; ENST00000393578.7; ENST00000541363.5; ENST00000537429.5; ENST00000536545.5; ENST00000537275.5; ENST00000539662.1; ENST00000425208.6; ENST00000393577.7
External Link RMBase: m6A_site_197413
mod ID: M6ASITE013768 Click to Show/Hide the Full List
mod site chr12:65867784-65867785:+ [10]
Sequence ACATAAAGCTTGTCATCTGAACAGGACTATAAGCATCTCGA
Motif Score 2.951386905
Cell/Tissue List iSLK
Seq Type List MeRIP-seq
Transcript ID List ENST00000403681.6; ENST00000393577.7; ENST00000537429.5; ENST00000541363.5; ENST00000354636.7; ENST00000536545.5; ENST00000425208.6; ENST00000539662.1
External Link RMBase: m6A_site_197439
mod ID: M6ASITE013769 Click to Show/Hide the Full List
mod site chr12:65867789-65867790:+ [10]
Sequence AAGCTTGTCATCTGAACAGGACTATAAGCATCTCGAGGGTA
Motif Score 4.065041667
Cell/Tissue List iSLK
Seq Type List MeRIP-seq
Transcript ID List ENST00000403681.6; ENST00000541363.5; ENST00000393577.7; ENST00000354636.7; ENST00000425208.6; ENST00000536545.5; ENST00000537429.5; ENST00000539662.1
External Link RMBase: m6A_site_197440
mod ID: M6ASITE013770 Click to Show/Hide the Full List
mod site chr12:65881793-65881794:+ [11]
Sequence GGAAGCCTGCTGATCCCGGAACTGGCCTTGCGCGCAAGTGG
Motif Score 3.373380952
Cell/Tissue List fibroblasts; iSLK; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000425208.6; ENST00000393577.7; ENST00000537429.5; ENST00000354636.7; ENST00000539662.1; ENST00000536545.5; ENST00000403681.6; ENST00000541363.5
External Link RMBase: m6A_site_197446
mod ID: M6ASITE013771 Click to Show/Hide the Full List
mod site chr12:65881825-65881826:+ [11]
Sequence CGCAAGTGGTGGGATGACAGACACATTCCCTTCCTTGAACT
Motif Score 2.897386905
Cell/Tissue List fibroblasts; GSC-11; iSLK; TIME; TREX; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000539662.1; ENST00000541363.5; ENST00000393577.7; ENST00000536545.5; ENST00000537429.5; ENST00000354636.7; ENST00000425208.6; ENST00000403681.6
External Link RMBase: m6A_site_197447
mod ID: M6ASITE013772 Click to Show/Hide the Full List
mod site chr12:65881843-65881844:+ [11]
Sequence AGACACATTCCCTTCCTTGAACTGCACTCTTTTCCCTTGCA
Motif Score 3.373380952
Cell/Tissue List fibroblasts; peripheral-blood; GSC-11; iSLK; TIME; TREX; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000537429.5; ENST00000354636.7; ENST00000393577.7; ENST00000403681.6; ENST00000536545.5; ENST00000425208.6; ENST00000541363.5; ENST00000539662.1
External Link RMBase: m6A_site_197448
mod ID: M6ASITE013773 Click to Show/Hide the Full List
mod site chr12:65951384-65951385:+ [12]
Sequence TTTTCTTTTCCTCCTTAGCCACAACAAGTTGTTCAGAAGAA
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000393577.7; ENST00000541363.5; ENST00000403681.6; ENST00000539662.1
External Link RMBase: m6A_site_197459
mod ID: M6ASITE013774 Click to Show/Hide the Full List
mod site chr12:65951387-65951388:+ [12]
Sequence TCTTTTCCTCCTTAGCCACAACAAGTTGTTCAGAAGAAGCC
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000541363.5; ENST00000539662.1; ENST00000393577.7; ENST00000403681.6
External Link RMBase: m6A_site_197460
mod ID: M6ASITE013775 Click to Show/Hide the Full List
mod site chr12:65963250-65963251:+ [13]
Sequence TTTGTGTGTTCCAGGAGGAAACTGAAGAGACATCCTCACAA
Motif Score 2.627720238
Cell/Tissue List HEK293T; HEC-1-A; NB4
Seq Type List m6A-seq
Transcript ID List ENST00000539662.1; ENST00000403681.6
External Link RMBase: m6A_site_197461
mod ID: M6ASITE013776 Click to Show/Hide the Full List
mod site chr12:65963259-65963260:+ [12]
Sequence TCCAGGAGGAAACTGAAGAGACATCCTCACAAGAGTCTGCC
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T; HEC-1-A; NB4
Seq Type List MAZTER-seq; m6A-seq
Transcript ID List ENST00000539662.1; ENST00000403681.6
External Link RMBase: m6A_site_197462
mod ID: M6ASITE013777 Click to Show/Hide the Full List
mod site chr12:65963267-65963268:+ [12]
Sequence GAAACTGAAGAGACATCCTCACAAGAGTCTGCCGAAGAGGA
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6; ENST00000539662.1
External Link RMBase: m6A_site_197463
mod ID: M6ASITE013778 Click to Show/Hide the Full List
mod site chr12:65963287-65963288:+ [13]
Sequence ACAAGAGTCTGCCGAAGAGGACTAGGGGGCGCCAACGTTCG
Motif Score 4.065041667
Cell/Tissue List HEK293T; HEC-1-A; NB4
Seq Type List m6A-seq
Transcript ID List ENST00000403681.6; ENST00000539662.1
External Link RMBase: m6A_site_197464
mod ID: M6ASITE013779 Click to Show/Hide the Full List
mod site chr12:65963349-65963350:+ [12]
Sequence GGATCTTTTGAAGGGAGAAGACACTGCAGTGACCACTTATT
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T; Huh7; HEC-1-A; NB4
Seq Type List MAZTER-seq; MeRIP-seq; m6A-seq
Transcript ID List ENST00000539662.1; ENST00000403681.6
External Link RMBase: m6A_site_197465
mod ID: M6ASITE013780 Click to Show/Hide the Full List
mod site chr12:65963452-65963453:+ [12]
Sequence GGGTGGGGTGGGGAGAAATCACATAACCTTAAAAAGGACTA
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197466
mod ID: M6ASITE013781 Click to Show/Hide the Full List
mod site chr12:65963469-65963470:+ [8]
Sequence ATCACATAACCTTAAAAAGGACTATATTAATCACCTTCTTT
Motif Score 4.065041667
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197467
mod ID: M6ASITE013782 Click to Show/Hide the Full List
mod site chr12:65963523-65963524:+ [8]
Sequence AGTCCCAGGTTTAGTGAAAAACTGCTGTAAACACAGGGGAC
Motif Score 2.627720238
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197468
mod ID: M6ASITE013783 Click to Show/Hide the Full List
mod site chr12:65963533-65963534:+ [8]
Sequence TTAGTGAAAAACTGCTGTAAACACAGGGGACACAGCTTAAC
Motif Score 2.20572619
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197469
mod ID: M6ASITE013784 Click to Show/Hide the Full List
mod site chr12:65963552-65963553:+ [12]
Sequence AACACAGGGGACACAGCTTAACAATGCAACTTTTAATTACT
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197470
mod ID: M6ASITE013785 Click to Show/Hide the Full List
mod site chr12:65963678-65963679:+ [12]
Sequence AATCACTGCACTGCATGCAAACAAGAAACGTGTCACACTTG
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197471
mod ID: M6ASITE013786 Click to Show/Hide the Full List
mod site chr12:65963692-65963693:+ [12]
Sequence ATGCAAACAAGAAACGTGTCACACTTGTGACGTCGGGCATT
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197472
mod ID: M6ASITE013787 Click to Show/Hide the Full List
mod site chr12:65963737-65963738:+ [12]
Sequence TAGGAAGAACGCGGTGTGTAACACTGTGTACACCTCAAATA
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197473
mod ID: M6ASITE013788 Click to Show/Hide the Full List
mod site chr12:65963746-65963747:+ [12]
Sequence CGCGGTGTGTAACACTGTGTACACCTCAAATACCACCCCAA
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197474
mod ID: M6ASITE013789 Click to Show/Hide the Full List
mod site chr12:65963798-65963799:+ [12]
Sequence TAGTGAATCCTCTGTTTAGAACACCAAAGATAAGGACTAGA
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197475
mod ID: M6ASITE013790 Click to Show/Hide the Full List
mod site chr12:65963813-65963814:+ [14]
Sequence TTAGAACACCAAAGATAAGGACTAGATACTACTTTCTCTTT
Motif Score 4.065041667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197476
mod ID: M6ASITE013791 Click to Show/Hide the Full List
mod site chr12:65963851-65963852:+ [12]
Sequence TTTTTCGTATAATCTTGTAGACACTTACTTGATGATTTTTA
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197477
mod ID: M6ASITE013792 Click to Show/Hide the Full List
mod site chr12:65963857-65963858:+ [14]
Sequence GTATAATCTTGTAGACACTTACTTGATGATTTTTAACTTTT
Motif Score 2.494845238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197478
mod ID: M6ASITE013793 Click to Show/Hide the Full List
mod site chr12:65963924-65963925:+ [12]
Sequence TGTATCCTTTCATTCAGCTAACAAACTAGAAAAGGTTATGT
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197479
mod ID: M6ASITE013794 Click to Show/Hide the Full List
mod site chr12:65963972-65963973:+ [12]
Sequence TCAAAAAGGGAAGTAAGCAAACAAATATTGCCAACTCTTCT
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197480
mod ID: M6ASITE013795 Click to Show/Hide the Full List
mod site chr12:65964271-65964272:+ [12]
Sequence ATTTCTTTTGCTATAGTTATACATCAATTTAAAAAGCAAAA
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197481
mod ID: M6ASITE013796 Click to Show/Hide the Full List
mod site chr12:65964442-65964443:+ [12]
Sequence ACTTCAAGTAATACGTTTTGACATAAGATGGTTGACCAAGG
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197482
mod ID: M6ASITE013797 Click to Show/Hide the Full List
mod site chr12:65964562-65964563:+ [12]
Sequence CAATACTACCTCTGAATGTTACAACGAATTTACAGTCTAGT
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197483
mod ID: M6ASITE013798 Click to Show/Hide the Full List
mod site chr12:65964667-65964668:+ [12]
Sequence TCATCTGCAGTTCTTTTTGTACACTTAATTACAGTTAAAGA
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197484
mod ID: M6ASITE013799 Click to Show/Hide the Full List
mod site chr12:65964716-65964717:+ [14]
Sequence CCTTACTGTGTTTCAGCATGACTATGTATTTTTCTATGTTT
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197485
mod ID: M6ASITE013800 Click to Show/Hide the Full List
mod site chr12:65964789-65964790:+ [12]
Sequence AGCTTCTCTGCTAGATTTCTACATTAACTTGAAAATTTTTT
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197486
mod ID: M6ASITE013801 Click to Show/Hide the Full List
mod site chr12:65964853-65964854:+ [12]
Sequence AAGGATAATTTTCCTCAATCACACTACACATCACACAAGAT
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197487
mod ID: M6ASITE013802 Click to Show/Hide the Full List
mod site chr12:65964985-65964986:+ [14]
Sequence CCAGACTTCAAAAGGAATGAACTTGTTACTTGCAGCATTCA
Motif Score 3.373380952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197488
mod ID: M6ASITE013803 Click to Show/Hide the Full List
mod site chr12:65965058-65965059:+ [14]
Sequence TGCAGCTAACCCTAGTCAAAACTATTTTTGTAAAAGACATT
Motif Score 2.627720238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197489
mod ID: M6ASITE013804 Click to Show/Hide the Full List
mod site chr12:65965074-65965075:+ [14]
Sequence CAAAACTATTTTTGTAAAAGACATTTGATAGAAAGGAACAC
Motif Score 2.897386905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197490
mod ID: M6ASITE013805 Click to Show/Hide the Full List
mod site chr12:65965158-65965159:+ [14]
Sequence AAAAGCCAACCTTCAAAGAAACTTGAAGCTTTGTAGGTGAG
Motif Score 2.627720238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197491
mod ID: M6ASITE013806 Click to Show/Hide the Full List
mod site chr12:65965184-65965185:+ [12]
Sequence AGCTTTGTAGGTGAGATGCAACAAGCCCTGCTTTTGCATAA
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197492
mod ID: M6ASITE013807 Click to Show/Hide the Full List
mod site chr12:65965257-65965258:+ [14]
Sequence TGAATATAAGAAAATGCTTGACAAATATTTTCATGTATTTT
Motif Score 2.859755952
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197493
mod ID: M6ASITE013808 Click to Show/Hide the Full List
mod site chr12:65965374-65965375:+ [14]
Sequence CTCTCCTAGTGAGTGTGCTGACTTTTTAACATGGTATTATC
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197494
mod ID: M6ASITE013809 Click to Show/Hide the Full List
mod site chr12:65965382-65965383:+ [12]
Sequence GTGAGTGTGCTGACTTTTTAACATGGTATTATCAACTGGGC
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197495
mod ID: M6ASITE013810 Click to Show/Hide the Full List
mod site chr12:65965516-65965517:+ [12]
Sequence GGGAGGTAGTTTCAAAGGCCACATACCTCTCTGAGACTGGC
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197496
mod ID: M6ASITE013811 Click to Show/Hide the Full List
mod site chr12:65965591-65965592:+ [12]
Sequence ATGGAGAGAATTAAAACTCAACATTACTGTTAACTGTGCGT
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197497
mod ID: M6ASITE013812 Click to Show/Hide the Full List
mod site chr12:65965733-65965734:+ [12]
Sequence CAATTGCTCATGTTGGCCAAACATGGTGCACCGAGTGATTT
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197498
mod ID: M6ASITE013813 Click to Show/Hide the Full List
mod site chr12:65965795-65965796:+ [14]
Sequence TTTTATTTCCTGTATGTTGTACAATCAAAACACACTACTAC
Motif Score 2.856142857
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197499
mod ID: M6ASITE013814 Click to Show/Hide the Full List
mod site chr12:65965885-65965886:+ [12]
Sequence TGGCCAATGGAACAGTAAGAACATCATAAAATTTTTATATA
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197500
mod ID: M6ASITE013815 Click to Show/Hide the Full List
mod site chr12:65965970-65965971:+ [12]
Sequence TGCTGTTGTTGGTCGCAGCTACATAAGACTGGACATTTAAC
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197501
mod ID: M6ASITE013816 Click to Show/Hide the Full List
mod site chr12:65966134-65966135:+ [14]
Sequence GAATTGCTGTCTATGATTGTACTTTGAATCGCTTGCTTGTT
Motif Score 3.278136905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197502
mod ID: M6ASITE013817 Click to Show/Hide the Full List
mod site chr12:65966194-65966195:+ [14]
Sequence ATTATCACTGTCTGTTCTGCACAATAAACATAACAGCCTCT
Motif Score 2.830589286
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000403681.6
External Link RMBase: m6A_site_197503
Pseudouridine (Pseudo)
In total 1 m6A sequence/site(s) in this target gene
mod ID: PSESITE000022 Click to Show/Hide the Full List
mod site chr12:65964467-65964468:+ [15]
Sequence AGATGGTTGACCAAGGTGCTTTTCTTCGGCTTGAGTTCACC
Transcript ID List ENST00000403681.6
External Link RMBase: Pseudo_site_1170