General Information of the m6A Target Gene (ID: M6ATAR00054)
Target Name Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1)
Synonyms
DNA-binding factor KBF1; EBP-1; Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
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Gene Name NFKB1
Chromosomal Location 4q24
Function
NF-kappa-B is a pleiotropic transcription factor present in almost all cell types and is the endpoint of a series of signal transduction events that are initiated by a vast array of stimuli related to many biological processes such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50, REL and NFKB2/p52 and the heterodimeric p65-p50 complex appears to be most abundant one. The dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have distinct preferences for different kappa-B sites that they can bind with distinguishable affinity and specificity. Different dimer combinations act as transcriptional activators or repressors, respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification and subcellular compartmentalization as well as by interactions with other cofactors or corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway, I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators, subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the nucleus. NF-kappa-B heterodimeric p65-p50 and RelB-p50 complexes are transcriptional activators. The NF-kappa-B p50-p50 homodimer is a transcriptional repressor, but can act as a transcriptional activator when associated with BCL3. NFKB1 appears to have dual functions such as cytoplasmic retention of attached NF-kappa-B proteins by p105 and generation of p50 by a cotranslational processing. The proteasome-mediated process ensures the production of both p50 and p105 and preserves their independent function, although processing of NFKB1/p105 also appears to occur post-translationally. p50 binds to the kappa-B consensus sequence 5'-GGRNNYYCC-3', located in the enhancer region of genes involved in immune response and acute phase reactions. In a complex with MAP3K8, NFKB1/p105 represses MAP3K8-induced MAPK signaling; active MAP3K8 is released by proteasome-dependent degradation of NFKB1/p105.
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Gene ID 4790
Uniprot ID
NFKB1_HUMAN
HGNC ID
HGNC:7794
KEGG ID
hsa:4790
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
NFKB1 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
Methyltransferase-like 3 (METTL3) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by METTL3
Cell Line LX2 cell line Homo sapiens
Treatment: shMETTL3 LX2 cells
Control: shLuc LX2 cells
GSE207909
Regulation
logFC: -6.78E-01
p-value: 1.44E-07
More Results Click to View More RNA-seq Results
In total 4 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary YTHDF2 accelerated UBXN1 mRNA degradation via METTL3-mediated m6A, which, in turn, promoted Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) activation. YTHDF2 promotes the malignant progression of gliomas and revealed important insight into the upstream regulatory mechanism of NF-Kappa-B activation via UBXN1 with a primary focus on m6A modification.
Target Regulation Up regulation
Responsed Disease Glioma ICD-11: 2A00.0
Pathway Response NF-kappa B signaling pathway hsa04064
In-vitro Model U87 (A primary glioblastoma cell line)
N33 (The GBM patient-derived cell line)
LN-229 Glioblastoma Homo sapiens CVCL_0393
H4 Astrocytoma Homo sapiens CVCL_1239
In-vivo Model Five-week-old female BALB/c nude mice (Charles Rivers, Beijing, China) were selected for the experiments. U87 cells (5 × 105) transfected with an empty vector, YTHDF2 overexpression, or METTL3 overexpression vectors were suspended in PBS and injected into the right frontal node of nude mice. The inoculation position was 2 mm lateral and 2 mm posterior to the anterior fontanel. Tumor size was estimated from luciferase volume measurements and MRI. The mice were sacrificed when they exhibited disturbed activity or convulsion. The brain was then harvested and embedded in paraffin.
Experiment 2 Reporting the m6A Methylation Regulator of This Target Gene [2]
Response Summary The contribution of METTL3-mediated m6A modif ication of Ddit4 mRNA to macrophage metabolic reprogramming in non-alcoholic fatty liver disease and obesity. In METTL3-deficient macrophages, there is a significant downregulation of mammalian target of rapamycin (mTOR) and Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) pathway activity in response to cellular stress and cytokine stimulation, which can be restored by knockdown of DDIT4.
Target Regulation Up regulation
Responsed Disease Obesity ICD-11: 5B81
Pathway Response mTOR signaling pathway hsa04150
HIF-1 signaling pathway hsa04066
In-vivo Model The 8-10 weeks old mice were fed either a high fat diet or HF-CDAA , ad lib for 6-12 weeks. Chow diet was used as control for HFD.The mouse liver was perfused with PBS through portal vein, and liver tissue was cut into small pieces by a scissor. The single cell was made using syringe plunger to mull the tissue, and passed through a 40 uM cell strainer.
Experiment 3 Reporting the m6A Methylation Regulator of This Target Gene [2]
Response Summary The contribution of Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1)-mediated m6A modification of Ddit4 mRNA to macrophage metabolic reprogramming in non-alcoholic fatty liver disease and obesity. In METTL3-deficient macrophages, there is a significant downregulation of mammalian target of rapamycin (mTOR) and Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) pathway activity in response to cellular stress and cytokine stimulation, which can be restored by knockdown of DDIT4.
Target Regulation Up regulation
Responsed Disease Obesity ICD-11: 5B81
Pathway Response mTOR signaling pathway hsa04150
HIF-1 signaling pathway hsa04066
In-vivo Model The 8-10 weeks old mice were fed either a high fat diet or HF-CDAA , ad lib for 6-12 weeks. Chow diet was used as control for HFD.The mouse liver was perfused with PBS through portal vein, and liver tissue was cut into small pieces by a scissor. The single cell was made using syringe plunger to mull the tissue, and passed through a 40 uM cell strainer.
Experiment 4 Reporting the m6A Methylation Regulator of This Target Gene [3]
Response Summary Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) acts as transcription factor to transactivate METTL3/METTL14 genes upon LPS challenge, leading to global RNA m6A hypermethylation. m6A modification in TGF-beta1 upregulation, which helps to shed light on the molecular mechanism of nonalcoholic steatohepatitis(NASH) progression.
Target Regulation Up regulation
Responsed Disease Nonalcoholic steatohepatitis ICD-11: DB92.1
In-vitro Model KCs (Mouse Kupffer cells (BeNa Culture Collection, Beijing, China; BNCC340733))
In-vivo Model At 8 weeks of age, METTL14 cKO and WT mice were challenged with LPS (Sigma-Aldrich, St. Louis, MO; L2880, single intraperitoneal injection at 5 mg/kg, n = 3) or CCl4 (10%, Macklin, Shanghai, China; C805332, intraperitoneal injection at 5 mL/kg diluted with corn oil, twice per week for 4 weeks, n = 3). The corresponding control groups were treated with single intraperitoneal injection of saline (n = 3) or intraperitoneal injection of corn oil twice per week for 4 weeks (n = 3), respectively. Two hours after LPS injection and 4 weeks after CCl4 treatment, METTL14 cKO and WT mice were etherized and the primary KCs were isolated from liver according to a previously published method.
Wilms tumor 1-associating protein (WTAP) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by WTAP
Cell Line mice hepatocyte Mus musculus
Treatment: Wtap Hknockout mice hepatocyte
Control: Wtap flox/flox mice hepatocyte
GSE168850
Regulation
logFC: 9.05E-01
p-value: 1.07E-04
More Results Click to View More RNA-seq Results
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [4]
Response Summary WTAP could methylate 3'-UTR of CAV-1 and downregulate CAV-1 expression to activate Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) signaling pathway in EC, which promoted EC progression.
Responsed Disease Endometrial cancer ICD-11: 2C76
Pathway Response NF-kappa B signaling pathway hsa04064
Apoptosis hsa04210
Cell Process Cell proliferation
Cell migration
Cell invasion
Cell apoptosis
In-vitro Model Ishikawa Endometrial adenocarcinoma Homo sapiens CVCL_2529
HEC-1-A Endometrial adenocarcinoma Homo sapiens CVCL_0293
Methyltransferase-like 14 (METTL14) [WRITER]
In total 2 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [5]
Response Summary Mettl14 gene knockout significantly reduced the inflammatory response of macrophages and the development of atherosclerotic plaques, Mettl14 plays a vital role in macrophage inflammation in atherosclerosis via the Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1)/IL-6 signaling pathway.
Target Regulation Up regulation
Responsed Disease Atherosclerosis ICD-11: BD40.Z
Pathway Response IL-17 signaling pathway hsa04657
In-vitro Model THP-1 Childhood acute monocytic leukemia Homo sapiens CVCL_0006
In-vivo Model Mettl14 heterozygous mice (Mettl14-/+) were established from C57/BL6 mice by Cyagen Biosciences, Inc. (Suzhou, Jiangsu, China), using CRISPR/Cas9-based targeting and homology-directed repair. C57/BL6 and APOE-/- mice were purchased from Beijing Vital River Laboratory Animal Technology (Beijing, China). Mettl14-/+APOE-/- mice were generated by breeding Mettl14-/+ mice with APOE-/- mice. Eight- to 10-week-old male APOE-/- (WT) mice and Mettl14-/+APOE-/- (KO) mice were fed a high-cholesterol diet (D12108C, Opensource diets) for 12 weeks. Then, the mice were euthanized for further analysis.
Experiment 2 Reporting the m6A Methylation Regulator of This Target Gene [3]
Response Summary Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) acts as transcription factor to transactivate METTL3/METTL14 genes upon LPS challenge, leading to global RNA m6A hypermethylation. m6A modification in TGF-beta1 upregulation, which helps to shed light on the molecular mechanism of nonalcoholic steatohepatitis(NASH) progression.
Target Regulation Up regulation
Responsed Disease Nonalcoholic steatohepatitis ICD-11: DB92.1
In-vitro Model KCs (Mouse Kupffer cells (BeNa Culture Collection, Beijing, China; BNCC340733))
In-vivo Model At 8 weeks of age, METTL14 cKO and WT mice were challenged with LPS (Sigma-Aldrich, St. Louis, MO; L2880, single intraperitoneal injection at 5 mg/kg, n = 3) or CCl4 (10%, Macklin, Shanghai, China; C805332, intraperitoneal injection at 5 mL/kg diluted with corn oil, twice per week for 4 weeks, n = 3). The corresponding control groups were treated with single intraperitoneal injection of saline (n = 3) or intraperitoneal injection of corn oil twice per week for 4 weeks (n = 3), respectively. Two hours after LPS injection and 4 weeks after CCl4 treatment, METTL14 cKO and WT mice were etherized and the primary KCs were isolated from liver according to a previously published method.
YTH domain-containing family protein 2 (YTHDF2) [READER]
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary YTHDF2 accelerated UBXN1 mRNA degradation via METTL3-mediated m6A, which, in turn, promoted Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) activation. YTHDF2 promotes the malignant progression of gliomas and revealed important insight into the upstream regulatory mechanism of NF-Kappa-B activation via UBXN1 with a primary focus on m6A modification.
Target Regulation Up regulation
Responsed Disease Glioma ICD-11: 2A00.0
Pathway Response NF-kappa B signaling pathway hsa04064
In-vitro Model U87 (A primary glioblastoma cell line)
N33 (The GBM patient-derived cell line)
LN-229 Glioblastoma Homo sapiens CVCL_0393
H4 Astrocytoma Homo sapiens CVCL_1239
In-vivo Model Five-week-old female BALB/c nude mice (Charles Rivers, Beijing, China) were selected for the experiments. U87 cells (5 × 105) transfected with an empty vector, YTHDF2 overexpression, or METTL3 overexpression vectors were suspended in PBS and injected into the right frontal node of nude mice. The inoculation position was 2 mm lateral and 2 mm posterior to the anterior fontanel. Tumor size was estimated from luciferase volume measurements and MRI. The mice were sacrificed when they exhibited disturbed activity or convulsion. The brain was then harvested and embedded in paraffin.
Brain cancer [ICD-11: 2A00]
In total 2 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary YTHDF2 accelerated UBXN1 mRNA degradation via METTL3-mediated m6A, which, in turn, promoted Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) activation. YTHDF2 promotes the malignant progression of gliomas and revealed important insight into the upstream regulatory mechanism of NF-Kappa-B activation via UBXN1 with a primary focus on m6A modification.
Responsed Disease Glioma [ICD-11: 2A00.0]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
Pathway Response NF-kappa B signaling pathway hsa04064
In-vitro Model U87 (A primary glioblastoma cell line)
N33 (The GBM patient-derived cell line)
LN-229 Glioblastoma Homo sapiens CVCL_0393
H4 Astrocytoma Homo sapiens CVCL_1239
In-vivo Model Five-week-old female BALB/c nude mice (Charles Rivers, Beijing, China) were selected for the experiments. U87 cells (5 × 105) transfected with an empty vector, YTHDF2 overexpression, or METTL3 overexpression vectors were suspended in PBS and injected into the right frontal node of nude mice. The inoculation position was 2 mm lateral and 2 mm posterior to the anterior fontanel. Tumor size was estimated from luciferase volume measurements and MRI. The mice were sacrificed when they exhibited disturbed activity or convulsion. The brain was then harvested and embedded in paraffin.
Experiment 2 Reporting the m6A-centered Disease Response [1]
Response Summary YTHDF2 accelerated UBXN1 mRNA degradation via METTL3-mediated m6A, which, in turn, promoted Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) activation. YTHDF2 promotes the malignant progression of gliomas and revealed important insight into the upstream regulatory mechanism of NF-Kappa-B activation via UBXN1 with a primary focus on m6A modification.
Responsed Disease Glioma [ICD-11: 2A00.0]
Target Regulator YTH domain-containing family protein 2 (YTHDF2) READER
Target Regulation Up regulation
Pathway Response NF-kappa B signaling pathway hsa04064
In-vitro Model U87 (A primary glioblastoma cell line)
N33 (The GBM patient-derived cell line)
LN-229 Glioblastoma Homo sapiens CVCL_0393
H4 Astrocytoma Homo sapiens CVCL_1239
In-vivo Model Five-week-old female BALB/c nude mice (Charles Rivers, Beijing, China) were selected for the experiments. U87 cells (5 × 105) transfected with an empty vector, YTHDF2 overexpression, or METTL3 overexpression vectors were suspended in PBS and injected into the right frontal node of nude mice. The inoculation position was 2 mm lateral and 2 mm posterior to the anterior fontanel. Tumor size was estimated from luciferase volume measurements and MRI. The mice were sacrificed when they exhibited disturbed activity or convulsion. The brain was then harvested and embedded in paraffin.
Endometrial cancer [ICD-11: 2C76]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [4]
Response Summary WTAP could methylate 3'-UTR of CAV-1 and downregulate CAV-1 expression to activate Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) signaling pathway in EC, which promoted EC progression.
Responsed Disease Endometrial cancer [ICD-11: 2C76]
Target Regulator Wilms tumor 1-associating protein (WTAP) WRITER
Pathway Response NF-kappa B signaling pathway hsa04064
Apoptosis hsa04210
Cell Process Cell proliferation
Cell migration
Cell invasion
Cell apoptosis
In-vitro Model Ishikawa Endometrial adenocarcinoma Homo sapiens CVCL_2529
HEC-1-A Endometrial adenocarcinoma Homo sapiens CVCL_0293
Obesity [ICD-11: 5B81]
In total 2 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [2]
Response Summary The contribution of METTL3-mediated m6A modif ication of Ddit4 mRNA to macrophage metabolic reprogramming in non-alcoholic fatty liver disease and obesity. In METTL3-deficient macrophages, there is a significant downregulation of mammalian target of rapamycin (mTOR) and Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) pathway activity in response to cellular stress and cytokine stimulation, which can be restored by knockdown of DDIT4.
Responsed Disease Obesity [ICD-11: 5B81]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
Pathway Response mTOR signaling pathway hsa04150
HIF-1 signaling pathway hsa04066
In-vivo Model The 8-10 weeks old mice were fed either a high fat diet or HF-CDAA , ad lib for 6-12 weeks. Chow diet was used as control for HFD.The mouse liver was perfused with PBS through portal vein, and liver tissue was cut into small pieces by a scissor. The single cell was made using syringe plunger to mull the tissue, and passed through a 40 uM cell strainer.
Experiment 2 Reporting the m6A-centered Disease Response [2]
Response Summary The contribution of Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1)-mediated m6A modification of Ddit4 mRNA to macrophage metabolic reprogramming in non-alcoholic fatty liver disease and obesity. In METTL3-deficient macrophages, there is a significant downregulation of mammalian target of rapamycin (mTOR) and Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) pathway activity in response to cellular stress and cytokine stimulation, which can be restored by knockdown of DDIT4.
Responsed Disease Obesity [ICD-11: 5B81]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
Pathway Response mTOR signaling pathway hsa04150
HIF-1 signaling pathway hsa04066
In-vivo Model The 8-10 weeks old mice were fed either a high fat diet or HF-CDAA , ad lib for 6-12 weeks. Chow diet was used as control for HFD.The mouse liver was perfused with PBS through portal vein, and liver tissue was cut into small pieces by a scissor. The single cell was made using syringe plunger to mull the tissue, and passed through a 40 uM cell strainer.
Atherosclerosis [ICD-11: BD40]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [5]
Response Summary Mettl14 gene knockout significantly reduced the inflammatory response of macrophages and the development of atherosclerotic plaques, Mettl14 plays a vital role in macrophage inflammation in atherosclerosis via the Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1)/IL-6 signaling pathway.
Responsed Disease Atherosclerosis [ICD-11: BD40.Z]
Target Regulator Methyltransferase-like 14 (METTL14) WRITER
Target Regulation Up regulation
Pathway Response IL-17 signaling pathway hsa04657
In-vitro Model THP-1 Childhood acute monocytic leukemia Homo sapiens CVCL_0006
In-vivo Model Mettl14 heterozygous mice (Mettl14-/+) were established from C57/BL6 mice by Cyagen Biosciences, Inc. (Suzhou, Jiangsu, China), using CRISPR/Cas9-based targeting and homology-directed repair. C57/BL6 and APOE-/- mice were purchased from Beijing Vital River Laboratory Animal Technology (Beijing, China). Mettl14-/+APOE-/- mice were generated by breeding Mettl14-/+ mice with APOE-/- mice. Eight- to 10-week-old male APOE-/- (WT) mice and Mettl14-/+APOE-/- (KO) mice were fed a high-cholesterol diet (D12108C, Opensource diets) for 12 weeks. Then, the mice were euthanized for further analysis.
Non-alcoholic fatty liver disease [ICD-11: DB92]
In total 2 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [3]
Response Summary Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) acts as transcription factor to transactivate METTL3/METTL14 genes upon LPS challenge, leading to global RNA m6A hypermethylation. m6A modification in TGF-beta1 upregulation, which helps to shed light on the molecular mechanism of nonalcoholic steatohepatitis(NASH) progression.
Responsed Disease Nonalcoholic steatohepatitis [ICD-11: DB92.1]
Target Regulator Methyltransferase-like 14 (METTL14) WRITER
Target Regulation Up regulation
In-vitro Model KCs (Mouse Kupffer cells (BeNa Culture Collection, Beijing, China; BNCC340733))
In-vivo Model At 8 weeks of age, METTL14 cKO and WT mice were challenged with LPS (Sigma-Aldrich, St. Louis, MO; L2880, single intraperitoneal injection at 5 mg/kg, n = 3) or CCl4 (10%, Macklin, Shanghai, China; C805332, intraperitoneal injection at 5 mL/kg diluted with corn oil, twice per week for 4 weeks, n = 3). The corresponding control groups were treated with single intraperitoneal injection of saline (n = 3) or intraperitoneal injection of corn oil twice per week for 4 weeks (n = 3), respectively. Two hours after LPS injection and 4 weeks after CCl4 treatment, METTL14 cKO and WT mice were etherized and the primary KCs were isolated from liver according to a previously published method.
Experiment 2 Reporting the m6A-centered Disease Response [3]
Response Summary Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1) acts as transcription factor to transactivate METTL3/METTL14 genes upon LPS challenge, leading to global RNA m6A hypermethylation. m6A modification in TGF-beta1 upregulation, which helps to shed light on the molecular mechanism of nonalcoholic steatohepatitis(NASH) progression.
Responsed Disease Nonalcoholic steatohepatitis [ICD-11: DB92.1]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
In-vitro Model KCs (Mouse Kupffer cells (BeNa Culture Collection, Beijing, China; BNCC340733))
In-vivo Model At 8 weeks of age, METTL14 cKO and WT mice were challenged with LPS (Sigma-Aldrich, St. Louis, MO; L2880, single intraperitoneal injection at 5 mg/kg, n = 3) or CCl4 (10%, Macklin, Shanghai, China; C805332, intraperitoneal injection at 5 mL/kg diluted with corn oil, twice per week for 4 weeks, n = 3). The corresponding control groups were treated with single intraperitoneal injection of saline (n = 3) or intraperitoneal injection of corn oil twice per week for 4 weeks (n = 3), respectively. Two hours after LPS injection and 4 weeks after CCl4 treatment, METTL14 cKO and WT mice were etherized and the primary KCs were isolated from liver according to a previously published method.
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Histone modification
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT03321
Epigenetic Regulator Probable JmjC domain-containing histone demethylation protein 2C (JMJD1C)
Regulated Target Histone H3 lysine 9 monomethylation (H3K9me1)
Crosstalk relationship Histone modification → m6A
Disease Brain cancer
m6A Regulator: YTH domain-containing family protein 2 (YTHDF2)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT03541
Epigenetic Regulator Histone-lysine N-methyltransferase EZH2 (EZH2)
Regulated Target Histone H3 lysine 27 trimethylation (H3K27me3)
Crosstalk relationship Histone modification → m6A
Disease Brain cancer
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00054)
Nuclear factor NF-kappa-B p105 subunit (NF-Kappa-B/NFKB1)
Adenosine-to-Inosine editing (A-to-I)
In total 8 m6A sequence/site(s) in this target gene
mod ID: A2ISITE000499 Click to Show/Hide the Full List
mod site chr4:102512399-102512400:+ [7]
Sequence GCTCTGTCACACAGGCTGGAATGCAGTGGCGCAATCATGGC
Transcript ID List ENST00000511926.5; ENST00000509165.1; ENST00000505458.5; ENST00000507079.5; ENST00000394820.8; ENST00000651197.1; ENST00000652619.1; ENST00000226574.9
External Link RMBase: RNA-editing_site_106022
mod ID: A2ISITE000500 Click to Show/Hide the Full List
mod site chr4:102512460-102512461:+ [7]
Sequence TGGTCCCAAGCTATCCTCCCACCTCAGCCACCCAAGTAGGT
Transcript ID List ENST00000509165.1; ENST00000507079.5; ENST00000511926.5; ENST00000394820.8; ENST00000651197.1; ENST00000505458.5; ENST00000226574.9; ENST00000652619.1
External Link RMBase: RNA-editing_site_106023
mod ID: A2ISITE000501 Click to Show/Hide the Full List
mod site chr4:102558719-102558720:+ [7]
Sequence GAGTGCAGTGGTGCGATCATAGCCCAATGCCACCTTGAACT
Transcript ID List ENST00000652569.1; ENST00000394820.8; ENST00000651197.1; ENST00000652619.1; ENST00000502367.1; ENST00000226574.9; ENST00000513803.5; ENST00000507079.5; ENST00000510638.1; ENST00000509165.1; ENST00000505458.5
External Link RMBase: RNA-editing_site_106024
mod ID: A2ISITE000502 Click to Show/Hide the Full List
mod site chr4:102559817-102559818:+ [8]
Sequence GTGTGGTGGCATGCACCTGTAGTCCTAGCTACCTAGGAGGC
Transcript ID List ENST00000652569.1; ENST00000652619.1; ENST00000509165.1; ENST00000505458.5; ENST00000513803.5; ENST00000502367.1; ENST00000226574.9; ENST00000507079.5; rmsk_1394736; ENST00000394820.8; ENST00000651197.1; ENST00000510638.1
External Link RMBase: RNA-editing_site_106025
mod ID: A2ISITE000503 Click to Show/Hide the Full List
mod site chr4:102570474-102570475:+ [7]
Sequence ATGTTATTGATAGGGAATTTAGGTTGATTCCATGTCTTTGC
Transcript ID List ENST00000652569.1; ENST00000510638.1; ENST00000651197.1; ENST00000513803.5; ENST00000394820.8; ENST00000507079.5; ENST00000505458.5; ENST00000226574.9; ENST00000652619.1; ENST00000509165.1
External Link RMBase: RNA-editing_site_106026
mod ID: A2ISITE000504 Click to Show/Hide the Full List
mod site chr4:102570580-102570581:+ [7]
Sequence CCTTTGATTGTGTACCCAACAGTGGGATTGCTGGGTCAAAT
Transcript ID List ENST00000652569.1; ENST00000226574.9; ENST00000505458.5; ENST00000651197.1; ENST00000513803.5; ENST00000394820.8; ENST00000507079.5; ENST00000509165.1; ENST00000652619.1; ENST00000510638.1
External Link RMBase: RNA-editing_site_106027
mod ID: A2ISITE000505 Click to Show/Hide the Full List
mod site chr4:102572555-102572556:+ [7]
Sequence CTTCCACAGTGGCTGAACTAATTTGCACTCCCACCAGCAGT
Transcript ID List ENST00000513803.5; ENST00000394820.8; ENST00000510638.1; ENST00000509165.1; ENST00000507079.5; ENST00000226574.9; ENST00000652569.1; ENST00000652619.1; ENST00000651197.1; ENST00000505458.5
External Link RMBase: RNA-editing_site_106028
mod ID: A2ISITE000506 Click to Show/Hide the Full List
mod site chr4:102572576-102572577:+ [7]
Sequence TTTGCACTCCCACCAGCAGTATATAAGTGTACCCTCTTCTC
Transcript ID List ENST00000507079.5; ENST00000509165.1; ENST00000513803.5; ENST00000226574.9; ENST00000651197.1; ENST00000505458.5; ENST00000510638.1; ENST00000652619.1; ENST00000394820.8; ENST00000652569.1
External Link RMBase: RNA-editing_site_106029
5-methylcytidine (m5C)
In total 3 m6A sequence/site(s) in this target gene
mod ID: M5CSITE003328 Click to Show/Hide the Full List
mod site chr4:102578982-102578983:+ [9]
Sequence AGCTTTTCTTCCGGATAGCACTGGCAGCTTCACAAGGCGCC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000513803.5; ENST00000652569.1; ENST00000600343.5; ENST00000508584.1; ENST00000510638.1; ENST00000652619.1; ENST00000226574.9; ENST00000651197.1; ENST00000394820.8; ENST00000505458.5
External Link RMBase: m5C_site_34268
mod ID: M5CSITE003329 Click to Show/Hide the Full List
mod site chr4:102597577-102597578:+ [9]
Sequence AGGCATGCCAATGCCCTTTTCGACTACGCGGTGACAGGAGA
Seq Type List Bisulfite-seq
Transcript ID List ENST00000652619.1; ENST00000505458.5; ENST00000652569.1; ENST00000651197.1; ENST00000600343.5; ENST00000394820.8; ENST00000226574.9
External Link RMBase: m5C_site_34269
mod ID: M5CSITE003330 Click to Show/Hide the Full List
mod site chr4:102600943-102600944:+ [9]
Sequence ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT
Seq Type List Bisulfite-seq
Transcript ID List ENST00000226574.9; ENST00000394820.8; ENST00000505458.5; ENST00000652569.1; ENST00000651197.1; ENST00000652619.1; ENST00000600343.5
External Link RMBase: m5C_site_34270
N6-methyladenosine (m6A)
In total 64 m6A sequence/site(s) in this target gene
mod ID: M6ASITE066784 Click to Show/Hide the Full List
mod site chr4:102501345-102501346:+ [10]
Sequence GAAGTGAGAGAGTGAGCGAGACAGAAAGAGAGAGAAGTGCA
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; GSC-11; HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000394820.8; rmsk_1394649
External Link RMBase: m6A_site_645711
mod ID: M6ASITE066785 Click to Show/Hide the Full List
mod site chr4:102501775-102501776:+ [10]
Sequence CGCCAGGAGGCCGAACGCGGACTCGCCACCCGGGTAAGCCA
Motif Score 4.065041667
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000226574.9; ENST00000652619.1; ENST00000507079.5; ENST00000651197.1; ENST00000511926.5; ENST00000394820.8
External Link RMBase: m6A_site_645712
mod ID: M6ASITE066786 Click to Show/Hide the Full List
mod site chr4:102501914-102501915:+ [10]
Sequence TGCGCTAACCGCTGGGCTAGACCGTGGGAGGAGGTTGACAG
Motif Score 2.876744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000511926.5; ENST00000651197.1; ENST00000507079.5; ENST00000505458.5; ENST00000652619.1; ENST00000226574.9; ENST00000394820.8
External Link RMBase: m6A_site_645713
mod ID: M6ASITE066787 Click to Show/Hide the Full List
mod site chr4:102525553-102525554:+ [10]
Sequence CCATATTTGGGAAGGCCTGAACAAGTAAGTGTCATAATCTC
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000509165.1; ENST00000507079.5; ENST00000652619.1; ENST00000651197.1; ENST00000226574.9; ENST00000505458.5; ENST00000511926.5; ENST00000394820.8
External Link RMBase: m6A_site_645714
mod ID: M6ASITE066788 Click to Show/Hide the Full List
mod site chr4:102533881-102533882:+ [10]
Sequence CAAATATTAGAGCAACCTAAACAGGTAAGATTAAAGGGGTG
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000505458.5; ENST00000509165.1; ENST00000226574.9; ENST00000652569.1; ENST00000652619.1; ENST00000511926.5; ENST00000394820.8; ENST00000507079.5; ENST00000651197.1
External Link RMBase: m6A_site_645715
mod ID: M6ASITE066789 Click to Show/Hide the Full List
mod site chr4:102537904-102537905:+ [10]
Sequence GAAGGCCCATCCCATGGTGGACTACCTGGTGCCTCTAGTGA
Motif Score 4.065041667
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000651197.1; ENST00000509165.1; ENST00000507079.5; ENST00000505458.5; ENST00000394820.8; ENST00000652569.1; ENST00000502367.1; ENST00000226574.9; ENST00000513803.5; ENST00000652619.1
External Link RMBase: m6A_site_645716
mod ID: M6ASITE066790 Click to Show/Hide the Full List
mod site chr4:102537930-102537931:+ [10]
Sequence TGGTGCCTCTAGTGAAAAGAACAAGAAGTCTTACCCTCAGG
Motif Score 2.951386905
Cell/Tissue List HeLa; hESC-HEK293T
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000652619.1; ENST00000652569.1; ENST00000226574.9; ENST00000651197.1; ENST00000513803.5; ENST00000394820.8; ENST00000507079.5; ENST00000502367.1; ENST00000509165.1; ENST00000505458.5
External Link RMBase: m6A_site_645717
mod ID: M6ASITE066791 Click to Show/Hide the Full List
mod site chr4:102557135-102557136:+ [10]
Sequence GGAGAAGAGAGAGTGAAGGAACTTGCACGCAGTGACTTCTA
Motif Score 3.373380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000394820.8; ENST00000505458.5; ENST00000507079.5; ENST00000652619.1; ENST00000652569.1; ENST00000510638.1; ENST00000226574.9; ENST00000502367.1; ENST00000651197.1; ENST00000513803.5; ENST00000509165.1
External Link RMBase: m6A_site_645718
mod ID: M6ASITE066792 Click to Show/Hide the Full List
mod site chr4:102567031-102567032:+ [11]
Sequence AGGTTATTGTTCAGTTGGTCACAAATGGAAAAAATATCCAC
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000652569.1; ENST00000505458.5; ENST00000510638.1; ENST00000394820.8; ENST00000507079.5; ENST00000651197.1; ENST00000502367.1; ENST00000509165.1; ENST00000226574.9; ENST00000513803.5; ENST00000652619.1
External Link RMBase: m6A_site_645719
mod ID: M6ASITE066793 Click to Show/Hide the Full List
mod site chr4:102567078-102567079:+ [10]
Sequence GCCCACAGCCTGGTGGGAAAACACTGTGAGGATGGGATCTG
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000505458.5; ENST00000652569.1; ENST00000394820.8; ENST00000226574.9; ENST00000507079.5; ENST00000651197.1; ENST00000513803.5; ENST00000510638.1; ENST00000509165.1; ENST00000652619.1; ENST00000502367.1
External Link RMBase: m6A_site_645720
mod ID: M6ASITE066794 Click to Show/Hide the Full List
mod site chr4:102567114-102567115:+ [10]
Sequence ATCTGCACTGTAACTGCTGGACCCAAGGACATGGTGGTCGG
Motif Score 3.622404762
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000507079.5; ENST00000652569.1; ENST00000651197.1; ENST00000226574.9; ENST00000509165.1; ENST00000513803.5; ENST00000394820.8; ENST00000505458.5; ENST00000510638.1; ENST00000652619.1
External Link RMBase: m6A_site_645721
mod ID: M6ASITE066795 Click to Show/Hide the Full List
mod site chr4:102567122-102567123:+ [10]
Sequence TGTAACTGCTGGACCCAAGGACATGGTGGTCGGGTAAGTAG
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; hESC-HEK293T
Seq Type List m6A-seq; DART-seq; MAZTER-seq
Transcript ID List ENST00000513803.5; ENST00000226574.9; ENST00000651197.1; ENST00000509165.1; ENST00000505458.5; ENST00000652619.1; ENST00000652569.1; ENST00000394820.8; ENST00000510638.1; ENST00000507079.5
External Link RMBase: m6A_site_645722
mod ID: M6ASITE066796 Click to Show/Hide the Full List
mod site chr4:102576883-102576884:+ [10]
Sequence TTTTTTCTCCAGCTTCGCAAACCTGGGTATACTTCATGTGA
Motif Score 2.185083333
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000507079.5; ENST00000505458.5; ENST00000652569.1; ENST00000651197.1; ENST00000394820.8; ENST00000513803.5; ENST00000509165.1; ENST00000510638.1; ENST00000652619.1; ENST00000226574.9
External Link RMBase: m6A_site_645723
mod ID: M6ASITE066797 Click to Show/Hide the Full List
mod site chr4:102576903-102576904:+ [11]
Sequence ACCTGGGTATACTTCATGTGACAAAGAAAAAAGTATTTGAA
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000510638.1; ENST00000652619.1; ENST00000505458.5; ENST00000226574.9; ENST00000507079.5; ENST00000651197.1; ENST00000652569.1; ENST00000513803.5; ENST00000394820.8
External Link RMBase: m6A_site_645724
mod ID: M6ASITE066798 Click to Show/Hide the Full List
mod site chr4:102576924-102576925:+ [10]
Sequence CAAAGAAAAAAGTATTTGAAACACTGGAAGCACGAATGACA
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000226574.9; ENST00000513803.5; ENST00000510638.1; ENST00000507079.5; ENST00000394820.8; ENST00000652569.1; ENST00000505458.5; ENST00000652619.1; ENST00000651197.1
External Link RMBase: m6A_site_645725
mod ID: M6ASITE066799 Click to Show/Hide the Full List
mod site chr4:102576974-102576975:+ [10]
Sequence ATAAGGGGCTATAATCCTGGACTCTTGGTGCACCCTGACCT
Motif Score 4.065041667
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000394820.8; ENST00000513803.5; ENST00000507079.5; ENST00000652569.1; ENST00000226574.9; ENST00000652619.1; ENST00000510638.1; ENST00000651197.1; ENST00000505458.5
External Link RMBase: m6A_site_645726
mod ID: M6ASITE066800 Click to Show/Hide the Full List
mod site chr4:102577024-102577025:+ [10]
Sequence GCAAGCAGAAGGTGGAGGGGACCGGCAGCTGGGAGGTAAGC
Motif Score 3.622404762
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000652619.1; ENST00000505458.5; ENST00000510638.1; ENST00000651197.1; ENST00000513803.5; ENST00000652569.1; ENST00000394820.8; ENST00000507079.5; ENST00000226574.9
External Link RMBase: m6A_site_645727
mod ID: M6ASITE066801 Click to Show/Hide the Full List
mod site chr4:102577721-102577722:+ [10]
Sequence CTCCATCTTCTGATACCCAGACTCAAAACCTTCCCATCCTC
Motif Score 3.319380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000394820.8; ENST00000652619.1; ENST00000510638.1; ENST00000513803.5; ENST00000651197.1; ENST00000226574.9; ENST00000652569.1; ENST00000505458.5; ENST00000600343.5
External Link RMBase: m6A_site_645728
mod ID: M6ASITE066802 Click to Show/Hide the Full List
mod site chr4:102577728-102577729:+ [10]
Sequence TTCTGATACCCAGACTCAAAACCTTCCCATCCTCACTGACT
Motif Score 2.185083333
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000226574.9; ENST00000651197.1; ENST00000394820.8; ENST00000510638.1; ENST00000600343.5; ENST00000505458.5; ENST00000652569.1; ENST00000652619.1; ENST00000513803.5
External Link RMBase: m6A_site_645729
mod ID: M6ASITE066803 Click to Show/Hide the Full List
mod site chr4:102578921-102578922:+ [10]
Sequence GCCAAGCAGCTCTGCAGCAGACCAAGGAGATGGACCTCAGC
Motif Score 2.876744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000651197.1; ENST00000508584.1; ENST00000652619.1; ENST00000505458.5; ENST00000652569.1; ENST00000513803.5; ENST00000394820.8; ENST00000226574.9; ENST00000600343.5; ENST00000510638.1
External Link RMBase: m6A_site_645730
mod ID: M6ASITE066804 Click to Show/Hide the Full List
mod site chr4:102578934-102578935:+ [10]
Sequence GCAGCAGACCAAGGAGATGGACCTCAGCGTGGTGCGGCTCA
Motif Score 3.622404762
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000508584.1; ENST00000226574.9; ENST00000513803.5; ENST00000652619.1; ENST00000394820.8; ENST00000505458.5; ENST00000510638.1; ENST00000600343.5; ENST00000651197.1; ENST00000652569.1
External Link RMBase: m6A_site_645731
mod ID: M6ASITE066805 Click to Show/Hide the Full List
mod site chr4:102579007-102579008:+ [10]
Sequence AGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGACGCCAT
Motif Score 2.930744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000513803.5; ENST00000505458.5; ENST00000600343.5; ENST00000652619.1; ENST00000508584.1; ENST00000226574.9; ENST00000510638.1; ENST00000394820.8; ENST00000651197.1; ENST00000652569.1
External Link RMBase: m6A_site_645732
mod ID: M6ASITE066806 Click to Show/Hide the Full List
mod site chr4:102580573-102580574:+ [10]
Sequence CTTGAAAATTGTAAGAATGGACAGGACAGCTGGATGTGTGA
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000394820.8; ENST00000505458.5; ENST00000652569.1; ENST00000652619.1; ENST00000508584.1; ENST00000651197.1; ENST00000510638.1; ENST00000226574.9; ENST00000600343.5
External Link RMBase: m6A_site_645733
mod ID: M6ASITE066807 Click to Show/Hide the Full List
mod site chr4:102580578-102580579:+ [10]
Sequence AAATTGTAAGAATGGACAGGACAGCTGGATGTGTGACTGGA
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000510638.1; ENST00000226574.9; ENST00000394820.8; ENST00000505458.5; ENST00000652619.1; ENST00000600343.5; ENST00000652569.1; ENST00000508584.1; ENST00000651197.1
External Link RMBase: m6A_site_645734
mod ID: M6ASITE066808 Click to Show/Hide the Full List
mod site chr4:102580624-102580625:+ [11]
Sequence GGAAATTTATCTTCTTTGTGACAAAGTTCAGAAAGGTAAAT
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000600343.5; ENST00000394820.8; ENST00000505458.5; ENST00000652619.1; ENST00000226574.9; ENST00000651197.1; ENST00000508584.1; ENST00000652569.1
External Link RMBase: m6A_site_645735
mod ID: M6ASITE066809 Click to Show/Hide the Full List
mod site chr4:102582868-102582869:+ [11]
Sequence AATGTGATTGTTTGCAGATGACATCCAGATTCGATTTTATG
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000394820.8; ENST00000226574.9; ENST00000651197.1; ENST00000652619.1; ENST00000652569.1; ENST00000508584.1; ENST00000600343.5; ENST00000505458.5
External Link RMBase: m6A_site_645736
mod ID: M6ASITE066810 Click to Show/Hide the Full List
mod site chr4:102594950-102594951:+ [10]
Sequence GGATTACTTTCCATCCTGGAACTACTAAATCTAATGCTGGG
Motif Score 3.373380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000226574.9; ENST00000652569.1; ENST00000394820.8; ENST00000600343.5; ENST00000505458.5; ENST00000504044.1; ENST00000652619.1; ENST00000651197.1
External Link RMBase: m6A_site_645737
mod ID: M6ASITE066811 Click to Show/Hide the Full List
mod site chr4:102596139-102596140:+ [10]
Sequence TTTTTGCATTTATCTTAGGAACCATGGACACTGAATCTAAA
Motif Score 2.930744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000504044.1; ENST00000652619.1; ENST00000394820.8; ENST00000652569.1; ENST00000226574.9; ENST00000505458.5; ENST00000651197.1; ENST00000600343.5
External Link RMBase: m6A_site_645738
mod ID: M6ASITE066812 Click to Show/Hide the Full List
mod site chr4:102596146-102596147:+ [10]
Sequence ATTTATCTTAGGAACCATGGACACTGAATCTAAAAAGGACC
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000505458.5; ENST00000226574.9; ENST00000652619.1; ENST00000394820.8; ENST00000504044.1; ENST00000651197.1; ENST00000652569.1; ENST00000600343.5
External Link RMBase: m6A_site_645739
mod ID: M6ASITE066813 Click to Show/Hide the Full List
mod site chr4:102596164-102596165:+ [10]
Sequence GGACACTGAATCTAAAAAGGACCCTGAAGGTTGTGACAAAA
Motif Score 3.622404762
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000652619.1; ENST00000651197.1; ENST00000394820.8; ENST00000652569.1; ENST00000504044.1; ENST00000600343.5; ENST00000505458.5; ENST00000226574.9
External Link RMBase: m6A_site_645740
mod ID: M6ASITE066814 Click to Show/Hide the Full List
mod site chr4:102596197-102596198:+ [10]
Sequence TGACAAAAGTGATGACAAAAACACTGTAAACCTCTTTGGGA
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000504044.1; ENST00000394820.8; ENST00000652619.1; ENST00000652569.1; ENST00000651197.1; ENST00000505458.5; ENST00000600343.5; ENST00000226574.9
External Link RMBase: m6A_site_645741
mod ID: M6ASITE066815 Click to Show/Hide the Full List
mod site chr4:102596206-102596207:+ [10]
Sequence TGATGACAAAAACACTGTAAACCTCTTTGGGAAAGTTATTG
Motif Score 2.185083333
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000505458.5; ENST00000504044.1; ENST00000652569.1; ENST00000651197.1; ENST00000394820.8; ENST00000600343.5; ENST00000652619.1; ENST00000226574.9
External Link RMBase: m6A_site_645742
mod ID: M6ASITE066816 Click to Show/Hide the Full List
mod site chr4:102596229-102596230:+ [10]
Sequence TCTTTGGGAAAGTTATTGAAACCACAGAGCAAGATCAGGAG
Motif Score 2.185083333
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000652569.1; ENST00000600343.5; ENST00000226574.9; ENST00000394820.8; ENST00000504044.1; ENST00000652619.1; ENST00000651197.1; ENST00000505458.5
External Link RMBase: m6A_site_645743
mod ID: M6ASITE066817 Click to Show/Hide the Full List
mod site chr4:102596304-102596305:+ [10]
Sequence CTCTAACGTATGCAACAGGAACAAAAGAAGAGAGTGCTGGA
Motif Score 2.951386905
Cell/Tissue List HeLa; hESC-HEK293T
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000651197.1; ENST00000652619.1; ENST00000652569.1; ENST00000226574.9; ENST00000600343.5; ENST00000504044.1; ENST00000505458.5; ENST00000394820.8
External Link RMBase: m6A_site_645744
mod ID: M6ASITE066818 Click to Show/Hide the Full List
mod site chr4:102600900-102600901:+ [11]
Sequence TGTTTTCATTCCAGTGTCTTACACTTAGCAATCATCCACCT
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000652569.1; ENST00000226574.9; ENST00000600343.5; ENST00000505458.5; ENST00000651197.1; ENST00000652619.1; ENST00000394820.8
External Link RMBase: m6A_site_645745
mod ID: M6ASITE066819 Click to Show/Hide the Full List
mod site chr4:102600955-102600956:+ [11]
Sequence TGAGGGATCTACTAGAAGTCACATCTGGTTTGATTTCTGAT
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000652569.1; ENST00000600343.5; ENST00000394820.8; ENST00000651197.1; ENST00000652619.1; ENST00000226574.9; ENST00000505458.5
External Link RMBase: m6A_site_645746
mod ID: M6ASITE066820 Click to Show/Hide the Full List
mod site chr4:102600986-102600987:+ [11]
Sequence GATTTCTGATGACATTATCAACATGAGAAATGATCTGTACC
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000651197.1; ENST00000394820.8; ENST00000652569.1; ENST00000505458.5; ENST00000652619.1; ENST00000600343.5; ENST00000226574.9
External Link RMBase: m6A_site_645747
mod ID: M6ASITE066821 Click to Show/Hide the Full List
mod site chr4:102606580-102606581:+ [10]
Sequence GGCCGACCTGAGCCTTCTGGACCGCTTGGGTAACTCTGTTT
Motif Score 3.622404762
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000651197.1; ENST00000600343.5; ENST00000652569.1; ENST00000505458.5; ENST00000226574.9; ENST00000652619.1; ENST00000394820.8
External Link RMBase: m6A_site_645748
mod ID: M6ASITE066822 Click to Show/Hide the Full List
mod site chr4:102606623-102606624:+ [10]
Sequence CACCTAGCTGCCAAAGAAGGACATGATAAAGTTCTCAGTAT
Motif Score 3.643047619
Cell/Tissue List HeLa; hESC-HEK293T
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000600343.5; ENST00000226574.9; ENST00000505458.5; ENST00000651197.1; ENST00000394820.8; ENST00000652569.1; ENST00000652619.1
External Link RMBase: m6A_site_645749
mod ID: M6ASITE066823 Click to Show/Hide the Full List
mod site chr4:102606655-102606656:+ [11]
Sequence TCTCAGTATCTTACTCAAGCACAAAAAGGCAGCACTACTTC
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000226574.9; ENST00000505458.5; ENST00000652569.1; ENST00000651197.1; ENST00000600343.5; ENST00000394820.8; ENST00000652619.1
External Link RMBase: m6A_site_645750
mod ID: M6ASITE066824 Click to Show/Hide the Full List
mod site chr4:102610595-102610596:+ [12]
Sequence AGCAGATCCCCTGGTGGAGAACTTTGAGCCTCTCTATGACC
Motif Score 3.373380952
Cell/Tissue List CD34
Seq Type List m6A-seq
Transcript ID List ENST00000394820.8; ENST00000505458.5; ENST00000652569.1; ENST00000226574.9; ENST00000651197.1; ENST00000652619.1; ENST00000600343.5
External Link RMBase: m6A_site_645751
mod ID: M6ASITE066825 Click to Show/Hide the Full List
mod site chr4:102610666-102610667:+ [10]
Sequence ATGAAGGAGTTGTGCCTGGAACCACGCCTCTAGATATGGCC
Motif Score 2.930744048
Cell/Tissue List HeLa; CD34
Seq Type List m6A-seq
Transcript ID List ENST00000600343.5; ENST00000652619.1; ENST00000651197.1; ENST00000394820.8; ENST00000652569.1; ENST00000226574.9; ENST00000505458.5
External Link RMBase: m6A_site_645752
mod ID: M6ASITE066826 Click to Show/Hide the Full List
mod site chr4:102612066-102612067:+ [10]
Sequence TTTGACATATTAAATGGGAAACCATATGAGCCAGAGTTTAC
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34
Seq Type List m6A-seq
Transcript ID List ENST00000651197.1; ENST00000652569.1; ENST00000600343.5; ENST00000394820.8; ENST00000226574.9; ENST00000652619.1; ENST00000505458.5
External Link RMBase: m6A_site_645753
mod ID: M6ASITE066827 Click to Show/Hide the Full List
mod site chr4:102612502-102612503:+ [10]
Sequence ACTAGAAATTCCTGATCCAGACAAAAACTGGGCTACTCTGG
Motif Score 2.897386905
Cell/Tissue List HeLa; hESC-HEK293T
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000652569.1; ENST00000226574.9; ENST00000651197.1; ENST00000652619.1; ENST00000505458.5; ENST00000600343.5; ENST00000394820.8
External Link RMBase: m6A_site_645754
mod ID: M6ASITE066828 Click to Show/Hide the Full List
mod site chr4:102612508-102612509:+ [10]
Sequence AATTCCTGATCCAGACAAAAACTGGGCTACTCTGGCGCAGA
Motif Score 2.627720238
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000600343.5; ENST00000505458.5; ENST00000394820.8; ENST00000651197.1; ENST00000226574.9; ENST00000652619.1; ENST00000652569.1
External Link RMBase: m6A_site_645755
mod ID: M6ASITE066829 Click to Show/Hide the Full List
mod site chr4:102612545-102612546:+ [13]
Sequence CAGAAATTAGGTCTGGGGATACTTAATAATGCCTTCCGGCT
Motif Score 2.53247619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000505458.5; ENST00000600343.5; ENST00000651197.1; ENST00000226574.9; ENST00000652569.1; ENST00000394820.8; ENST00000652619.1
External Link RMBase: m6A_site_645756
mod ID: M6ASITE066830 Click to Show/Hide the Full List
mod site chr4:102612585-102612586:+ [10]
Sequence TGAGTCCTGCTCCTTCCAAAACACTTATGGACAACTATGAG
Motif Score 2.20572619
Cell/Tissue List HeLa; hESC-HEK293T
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000651197.1; ENST00000394820.8; ENST00000226574.9; ENST00000600343.5; ENST00000505458.5; ENST00000652619.1; ENST00000652569.1
External Link RMBase: m6A_site_645757
mod ID: M6ASITE066831 Click to Show/Hide the Full List
mod site chr4:102612595-102612596:+ [10]
Sequence TCCTTCCAAAACACTTATGGACAACTATGAGGTAACACCTT
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000652619.1; ENST00000600343.5; ENST00000226574.9; ENST00000505458.5; ENST00000651197.1; ENST00000652569.1; ENST00000394820.8
External Link RMBase: m6A_site_645758
mod ID: M6ASITE066832 Click to Show/Hide the Full List
mod site chr4:102613476-102613477:+ [11]
Sequence GGCCCTGAGACAAATGGGCTACACCGAAGCAATTGAAGTGA
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000652569.1; ENST00000651197.1; ENST00000505458.5; ENST00000652619.1; ENST00000226574.9; ENST00000394820.8; ENST00000600343.5
External Link RMBase: m6A_site_645759
mod ID: M6ASITE066833 Click to Show/Hide the Full List
mod site chr4:102613523-102613524:+ [14]
Sequence CAGCCTCCAGCCCAGTGAAGACCACCTCTCAGGCCCACTCG
Motif Score 2.876744048
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000652569.1; ENST00000651197.1; ENST00000226574.9; ENST00000394820.8; ENST00000505458.5; ENST00000652619.1; ENST00000600343.5
External Link RMBase: m6A_site_645760
mod ID: M6ASITE066834 Click to Show/Hide the Full List
mod site chr4:102613565-102613566:+ [11]
Sequence TGCCTCTCTCGCCTGCCTCCACAAGGCAGCAAATAGGTAAA
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000652569.1; ENST00000651197.1; ENST00000600343.5; ENST00000394820.8; ENST00000226574.9; ENST00000505458.5; ENST00000652619.1
External Link RMBase: m6A_site_645761
mod ID: M6ASITE066835 Click to Show/Hide the Full List
mod site chr4:102616445-102616446:+ [15]
Sequence CCCCTCAGACGAGCTCCGAGACAGTGACAGTGTCTGCGACA
Motif Score 2.897386905
Cell/Tissue List liver; endometrial
Seq Type List m6A-REF-seq; m6A-seq
Transcript ID List ENST00000505458.5; ENST00000651197.1; ENST00000226574.9; ENST00000652619.1; ENST00000652569.1; ENST00000600343.5; ENST00000394820.8
External Link RMBase: m6A_site_645762
mod ID: M6ASITE066836 Click to Show/Hide the Full List
mod site chr4:102616463-102616464:+ [15]
Sequence AGACAGTGACAGTGTCTGCGACAGCGGCGTGGAGACATCCT
Motif Score 2.865571429
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000652569.1; ENST00000600343.5; ENST00000226574.9; ENST00000505458.5; ENST00000651197.1; ENST00000652619.1; ENST00000394820.8
External Link RMBase: m6A_site_645763
mod ID: M6ASITE066837 Click to Show/Hide the Full List
mod site chr4:102616477-102616478:+ [11]
Sequence TCTGCGACAGCGGCGTGGAGACATCCTTCCGCAAACTCAGC
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T; HeLa; endometrial
Seq Type List MAZTER-seq; m6A-seq
Transcript ID List ENST00000505458.5; ENST00000652569.1; ENST00000651197.1; ENST00000600343.5; ENST00000652619.1; ENST00000394820.8; ENST00000226574.9
External Link RMBase: m6A_site_645764
mod ID: M6ASITE066838 Click to Show/Hide the Full List
mod site chr4:102616491-102616492:+ [16]
Sequence GTGGAGACATCCTTCCGCAAACTCAGCTTTACCGAGTCTCT
Motif Score 2.627720238
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000226574.9; ENST00000652569.1; ENST00000505458.5; ENST00000651197.1; ENST00000652619.1; ENST00000394820.8; ENST00000600343.5
External Link RMBase: m6A_site_645765
mod ID: M6ASITE066839 Click to Show/Hide the Full List
mod site chr4:102616534-102616535:+ [17]
Sequence CCAGTGGTGCCTCACTGCTAACTCTCAACAAAATGCCCCAT
Motif Score 2.590089286
Cell/Tissue List CD8T
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000600343.5; ENST00000226574.9; ENST00000651197.1; ENST00000505458.5; ENST00000652569.1; ENST00000652619.1; ENST00000394820.8
External Link RMBase: m6A_site_645766
mod ID: M6ASITE066840 Click to Show/Hide the Full List
mod site chr4:102616541-102616542:+ [11]
Sequence TGCCTCACTGCTAACTCTCAACAAAATGCCCCATGATTATG
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T; CD8T; A549
Seq Type List MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000600343.5; ENST00000652619.1; ENST00000505458.5; ENST00000651197.1; ENST00000394820.8; ENST00000226574.9; ENST00000652569.1
External Link RMBase: m6A_site_645767
mod ID: M6ASITE066841 Click to Show/Hide the Full List
mod site chr4:102616572-102616573:+ [18]
Sequence CATGATTATGGGCAGGAAGGACCTCTAGAAGGCAAAATTTA
Motif Score 3.622404762
Cell/Tissue List HEK293T; HeLa; fibroblasts; A549; LCLs; CD8T; Huh7; MSC; TIME; TREX
Seq Type List MeRIP-seq; m6A-seq; m6A-CLIP/IP
Transcript ID List ENST00000600343.5; ENST00000505458.5; ENST00000652619.1; ENST00000226574.9; ENST00000651197.1; ENST00000394820.8; ENST00000652569.1
External Link RMBase: m6A_site_645768
mod ID: M6ASITE066842 Click to Show/Hide the Full List
mod site chr4:102616601-102616602:+ [11]
Sequence AGGCAAAATTTAGCCTGCTGACAATTTCCCACACCGTGTAA
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T; CD8T
Seq Type List MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000226574.9; ENST00000600343.5; ENST00000652569.1; ENST00000505458.5; ENST00000394820.8; ENST00000652619.1; ENST00000651197.1
External Link RMBase: m6A_site_645769
mod ID: M6ASITE066843 Click to Show/Hide the Full List
mod site chr4:102616611-102616612:+ [11]
Sequence TAGCCTGCTGACAATTTCCCACACCGTGTAAACCAAAGCCC
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000226574.9; ENST00000600343.5; ENST00000505458.5; ENST00000652569.1; ENST00000652619.1; ENST00000651197.1; ENST00000394820.8
External Link RMBase: m6A_site_645770
mod ID: M6ASITE066844 Click to Show/Hide the Full List
mod site chr4:102616622-102616623:+ [10]
Sequence CAATTTCCCACACCGTGTAAACCAAAGCCCTAAAATTCCAC
Motif Score 2.185083333
Cell/Tissue List HeLa; HEK293T; fibroblasts; A549; LCLs; MT4; Huh7; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000394820.8; ENST00000652569.1; ENST00000652619.1; ENST00000505458.5; ENST00000226574.9; ENST00000600343.5; ENST00000651197.1
External Link RMBase: m6A_site_645771
mod ID: M6ASITE066845 Click to Show/Hide the Full List
mod site chr4:102616653-102616654:+ [11]
Sequence AAAATTCCACTGCGTTGTCCACAAGACAGAAGCTGAAGTGC
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000505458.5; ENST00000394820.8; ENST00000651197.1; ENST00000652569.1; ENST00000600343.5; ENST00000226574.9; ENST00000652619.1
External Link RMBase: m6A_site_645772
mod ID: M6ASITE066846 Click to Show/Hide the Full List
mod site chr4:102616658-102616659:+ [18]
Sequence TCCACTGCGTTGTCCACAAGACAGAAGCTGAAGTGCATCCA
Motif Score 2.897386905
Cell/Tissue List HEK293T; HeLa; fibroblasts; A549; LCLs; MT4; Huh7; iSLK; MSC; TIME; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000600343.5; ENST00000505458.5; ENST00000394820.8; ENST00000652619.1; ENST00000651197.1; ENST00000226574.9; ENST00000652569.1
External Link RMBase: m6A_site_645773
mod ID: M6ASITE066847 Click to Show/Hide the Full List
mod site chr4:102616729-102616730:+ [16]
Sequence CATTCTCGATTTAACTCGAGACCTTTTCAACTTGGCTTCCT
Motif Score 2.876744048
Cell/Tissue List HeLa; MT4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000652619.1; ENST00000651197.1; ENST00000394820.8; ENST00000226574.9; ENST00000652569.1; ENST00000505458.5; ENST00000600343.5
External Link RMBase: m6A_site_645774