m6A-centered Crosstalk Information
Mechanism of Crosstalk between m6A Modification and Epigenetic Regulation
| Crosstalk ID |
M6ACROT05886
|
[1] | |||
Non-coding RNA
SOX2OT
ALKBH5
lncRNA miRNA circRNA
Direct
Enhancement
m6A modification
SOX2
SOX2
ALKBH5
Demethylation
: m6A sites
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| m6A Modification: | |||||
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| m6A Regulator | RNA demethylase ALKBH5 (ALKBH5) | ERASER | |||
| m6A Target | Transcription factor SOX-2 (SOX2) | ||||
| Epigenetic Regulation that have Cross-talk with This m6A Modification: | |||||
| Epigenetic Regulation Type | Non-coding RNA (ncRNA) | ||||
| Epigenetic Regulator | SOX2 overlapping transcript (SOX2OT) | LncRNA | View Details | ||
| Regulated Target | RNA demethylase ALKBH5 (ALKBH5) | View Details | |||
| Crosstalk Relationship | ncRNA → m6A | Enhancement | |||
| Crosstalk Mechanism | ncRNAs directly impacts m6A modification through recruiting m6A regulator | ||||
| Crosstalk Summary | LncRNA Transcription factor SOX-2 (SOX2)OT promotes temozolomide resistance by elevating SOX2 expression via ALKBH5-mediated epigenetic regulation in glioblastoma. SOX2OT recruited ALKBH5, which binds with SOX2, demethylating the SOX2 transcript, leading to enhanced SOX2 expression. LncRNA SOX2OT inhibited cell apoptosis, promoted cell proliferation, and TMZ resistance by upregulating SOX2 expression, which activated the Wnt5a/beta-catenin signaling pathway. | ||||
| Responsed Disease | Glioblastoma | ICD-11: 2A00.00 | |||
| Responsed Drug | Temozolomide | ||||
| Pathway Response | Wnt signaling pathway | hsa04310 | |||
| Cell Process | Cell proliferation | ||||
| Cell apoptosis, cell viability | |||||
In-vitro Model |
U87 (A primary glioblastoma cell line) | ||||
| U251 (Fibroblasts or fibroblast like cells) | |||||
| U87TR (U87-Temozolomide Resistant cell) | |||||
| U251-TR3 | Astrocytoma | Homo sapiens | CVCL_1G29 | ||
| In-vivo Model | The nude mice were grouped randomly without blinding, then 2 × 106 U87TR-sh-NC and U87TR-sh-SOX2OT cells were independently injected subcutaneously into the flanks of nude mice in each group, respectively. | ||||
Full List of Potential Compound(s) Related to This m6A-centered Crosstalk
| 2A00: Brain cancer | 53 Compound(s) Regulating the Disease | Click to Show/Hide the Full List | ||
| Zinostatin stimalamer | Approved | [2] | ||
| Synonyms |
Smancs (TN)
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| Motexafin gadolinium | Approved | [3] | ||
| Synonyms |
Xcytrin; Gadolinium texaphyrin; GdT2B2; GD-Tex; Motexafin gadolinium (USAN); PCI-0120; Xcytrin (TN)
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| Lomustine | Approved | [4] | ||
| Synonyms |
Belustine; CCNU; CINU; Cecenu; CeeNU; Chloroethylcyclohexylnitrosourea; Lomustina; Lomustinum; Bristol Myers Squibb Brand of Lomustine; CCNU [Chloroethyl nitrosoureas]; Cyclohexyl chloroethyl nitrosourea; Lomustine medac Brand; Medac Brand of Lomustine; Rhone Poulenc Rorer Brand of Lomustine; OR5087; RB 1509; SRI 2200; Bristol-Myers Squibb Brand of Lomustine; CeeNU (TN); Lomustina [INN-Spanish]; Lomustinum [INN-Latin]; NPFAPI-06; Rhone-Poulenc Rorer Brand of Lomustine; CeeNU, CCNU, Lomustine; Lomustine (USAN/INN); Lomustine [USAN:BAN:INN]; N-(2-Chloroethyl)-N'-cyclohexyl-N-nitrosourea; (Chloro-2-ethyl)-1-cyclohexyl-3-nitrosourea; (Cloro-2-etil)-1-cicloesil-3-nitrosourea; (Cloro-2-etil)-1-cicloesil-3-nitrosourea [Italian];1-(2-Chloroethyl)-3-cyclohexyl-1-nitrosourea; 1-(2-Chloroethyl)-3-cyclohexyl-1-nitrosourea [Chloroethyl nitrosoureas]; 1-(2-Chloroethyl)-3-cyclohexylnitrosourea
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| Borocaptate sodium B 10 | Approved | [2] | ||
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| DTI-015 | Approved | [5] | ||
| Synonyms |
Carmustine; 154-93-8; 1,3-Bis(2-chloroethyl)-1-nitrosourea; BCNU; Carmustin; Nitrumon; Carmubris; Gliadel; BiCNU; Bi CNU; Carmustinum; Bischlorethylnitrosurea; Bischlorethylnitrosourea; Carmustina; Becenun; Becenum; Bischloroethyl nitrosourea; N,N'-BIS(2-CHLOROETHYL)-N-NITROSOUREA; Bis(2-chloroethyl)nitrosourea; Urea, N,N'-bis(2-chloroethyl)-N-nitroso-; Gliadel Wafer; FDA 0345; Bischloroethylnitrosourea; SRI 1720; 1,3-Bis(2-chloroethyl)nitrosourea; BiCNU (TN); Carmustinum [INN-Latin]; Carmustina [INN-Spanish]; DTI 015; NCI-C04773; SK; Injectable carmustine, Direct Therapeutics
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| Prinomastat | Approved | [6] | ||
| Synonyms |
AG-3354; AG-3362; Prinomastat (USAN/INN); (3S)-N-hydroxy-2,2-dimethyl-4-(4-pyridin-4-yloxyphenyl)sulfonylthiomorpholine-3-carboxamide
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| INO-1001 | Phase 3 | [7] | ||
| Synonyms |
Hypoxanthine arabinoside; LT00454797; 9-[(3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-3H-purin-6-one
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| GliAtak | Phase 3 | [8] | ||
| Synonyms |
GliAtak (TN)
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| SOT-107 | Phase 3 | [9] | ||
| Synonyms |
TransMID
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| ICT-107 | Phase 3 | [10] | ||
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| Cintredekin besudotox | Phase 3 | [11] | ||
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| Rindopepimut | Phase 3 | [12] | ||
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| DCVax-Ovarian | Phase 3 | [13] | ||
| Synonyms |
DCVax-L; Dendritic cell-based immunotherapy (ovarian cancer), Northwest Biotherapeutics
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| DCVax-Brain | Phase 3 | [14] | ||
| Synonyms |
Dendritic cell-based immunotherapy (brain cancer), Northwest Biotherapeutics
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| TVI-Brain-1 | Phase 2/3 | [15] | ||
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| NLG8189 | Phase 2/3 | [16] | ||
| Synonyms |
1-Methyl-D-tryptophan; Indoximod; 110117-83-4; D-Tryptophan, 1-methyl-; D-1MT; Indoximod (NLG-8189); D-1-methyltryptophan; UNII-TX5CYN1KMZ; D-(+)-1-Methyltryptophan; TX5CYN1KMZ; (R)-2-amino-3-(1-methyl-1H-indol-3-yl)propanoic acid; (2R)-2-amino-3-(1-methylindol-3-yl)propanoic acid; NSC-721782; (2R)-2-amino-3-(1-methyl-3-indolyl)propanoic acid; 1-MT; (2R)-2-azanyl-3-(1-methylindol-3-yl)propanoic acid; (2R)-2-amino-3-(1-methyl-1H-indol-3-yl)propanoic acid; D-l-Methyltryptophan; Indoximod [USAN:INN]; NLG-8189; NLG 8189
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| Synthetic survivin peptide vaccine | Phase 2 | [17] | ||
| External Link | ||||
| Fresolimumab | Phase 2 | [18] | ||
| Synonyms |
GC-1008
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| DNX-2401 | Phase 2 | [19] | ||
| Synonyms |
Tasadenoturev
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| TVI-Brain-1 cancer vaccine | Phase 2 | [20] | ||
| External Link | ||||
| PDT with Photofrin | Phase 2 | [16] | ||
| External Link | ||||
| F18-ML-10 | Phase 2 | [21] | ||
| External Link | ||||
| PT2385 | Phase 2 | [22] | ||
| Synonyms |
ONBSHRSJOPSEGS-INIZCTEOSA-N; PT-2385; UNII-6O16716DXP; 1672665-49-4; 6O16716DXP; SCHEMBL16555810; ZINC230453533; AKOS030526641; HY-12867; PT2385,1672665-49-4, PT 2385,PT-2385; Benzonitrile, 3-(((1S)-2,2-difluoro-2,3-dihydro-1-hydroxy-7-(methylsulfonyl)-1H-inden-4-yl)oxy)-5-fluoro-; 3-{[(1s)-2,2-Difluoro-1-Hydroxy-7-(Methylsulfonyl)-2,3-Dihydro-1h-Inden-4-Yl]oxy}-5-Fluorobenzonitrile; 3-(((1S)-2,2-Difluoro-1-hydroxy-7-methanesulfonyl-2,3-dihydro-1hinden-4-yl)oxy)-5-fluorobenzonitrile; 79A
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| ABT-414 | Phase 2 | [23] | ||
| External Link | ||||
| CLR1404-I-124 | Phase 1/2 | [24] | ||
| External Link | ||||
| DM-CHOC-PEN | Phase 2 | [25] | ||
| External Link | ||||
| L-alanosine | Phase 2 | [26] | ||
| Synonyms |
SDX-102
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| APX005M | Phase 2 | [16] | ||
| External Link | ||||
| WP-1066 | Phase 1/2 | [20] | ||
| Synonyms |
WP1066; 857064-38-1; (S,E)-3-(6-Bromopyridin-2-yl)-2-cyano-N-(1-phenylethyl)acrylamide; WP 1066; UNII-63V8AIE65T; 63V8AIE65T; AK-99218; C17H14BrN3O; (E)-3-(6-bromopyridin-2-yl)-2-cyano-N-[(1S)-1-phenylethyl]prop-2-enamide; MLS006010178; SCHEMBL1315826; QCR-16; SCHEMBL1315831; GTPL7972; CHEMBL1923234; EX-A760; AOB1497; DTXSID50235007; MolPort-044-723-708; MolPort-023-219-149; ZINC13983221; AKOS016007983; WP1066/WP-1066; CS-2736; DB12679; 2-Propenamide, 3-(6-bromo-2-pyridinyl)-2-cyano-N-((1S)-1-phenylethyl)-, (2E)-; HY-15312
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| Anti-EGFRvIII CAR transduced PBL | Phase 1/2 | [27] | ||
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| RG6156 | Phase 1 | [28] | ||
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| rhenium-186 | Phase 1 | [29] | ||
| Synonyms |
(~186~Re)Rhenium; 14998-63-1; 186Re; DTXSID60933825; Q18882928; RHENIUM (186-RE); Rhenium Re-186; Rhenium, isotope of mass 186; Rhenium-186; RHENIUM-186 [WHO-DD]; UNII-ZU7F1ET6TM; ZU7F1ET6TM
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| IGV-001 | Phase 1 | [30] | ||
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| DA-3607 | Phase 1 | [31] | ||
| Synonyms |
Ad-stTRAIL; TRAIL adenoviral gene therapy (cancer), Dong-A
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| DC/I540/KLH vaccine | Phase 1 | [32] | ||
| Synonyms |
HTERT:540-548; Telomerase: 540-548 peptide vaccine; DC/I540/KLH vaccine (cancer); Dendritic cell/hTERT peptide I540/keyhole limpet hemocyanin vaccine, Dana-Farber; DC/I540/KLH vaccine (cancer), Dana-Farber
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| KX2-361 | Phase 1 | [33] | ||
| Synonyms |
KX-02
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| MR1-1 | Phase 1 | [34] | ||
| Synonyms |
MR1-1KDEL; EGFR-specific immunotoxin, IVAX; Anticancer immunotoxin (EGFR-specific), IVAX
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| INdoximod + temozolomide | Phase 1 | [20] | ||
| External Link | ||||
| Anti-CD133-CAR vector-transduced T cells | Phase 1 | [35] | ||
| External Link | ||||
| 8H9 | Phase 1 | [36] | ||
| External Link | ||||
| CC-8490 | Phase 1 | [37] | ||
| External Link | ||||
| Sitimagene ceradenovec | Discontinued in Phase 3 | [38] | ||
| Synonyms |
Cerepro; EG-009; HSV thymidine kinase gene therapy, Ark
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| Ranagengliotucel-T | Discontinued in Phase 3 | [39] | ||
| Synonyms |
Glionix; Brain tumor vaccine, NovaRx; Antisense (TGFbeta) brain tumor vaccine, NovaRx
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| Oncolysin S | Discontinued in Phase 2 | [40] | ||
| Synonyms |
N901-bR
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| Labradimil | Discontinued in Phase 2 | [41] | ||
| Synonyms |
Cereport; Lobradimil; Receptor mediated permeabilizer; RMP 7; DRG-0182; RMP-7; N2-((S)-2-(L-Arginyl-L-prolyl-trans-4-hydroxy-L-prolylglycyl-3-(2-thienyl)-L-alanyl-L-seryl-L-prolinamido)-3-(p-methoxyphenyl)propyl)-L-arginine; (S-(R*,R*))-L-Arginyl-L-prolyl-trans-4-hydroxy-L-prolyl-3-(2-thienyl)-L-alanylglycyl-L-seryl-N-(2-((4-((aminoiminomethyl)amino)-1-carboxybutyl)amino)-1-((4-methoxyphenyl)methyl)ethyl)-L-prolinamide
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| Brain tumor vaccine | Discontinued in Phase 1 | [42] | ||
| Synonyms |
Brain cancer vaccine, IRC; Brain tumor vaccine, IRC; IR-850; Established cancer cell line therapy (brain cancer), IRC; GM-CSF vaccine (brain cancer), IRC
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| PCNU | Terminated | [43] | ||
| Synonyms |
NSC-95466
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| 131I-81C6 | Terminated | [44] | ||
| Synonyms |
Neuradiab; MAb-81C6; Iodine-131-81C6; Astatine-211-MAb-81C6; Iodine-131-MAb-81C6; Iodine-131-ch-81C6; Iodine-131-ch-81C6-F(ab)2; 211At-MAb-81C6
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| NSD-551 | Terminated | [45] | ||
| Synonyms |
BK channel activator (cancer), NeuroSearch/TopoTarget
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| AGT-2000 | Investigative | [46] | ||
| Synonyms |
Gene therapy (intravenous, brain cancer), ArmaGen
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| NV.XOD.09 | Investigative | [47] | ||
| External Link | ||||
| EDP-19 | Investigative | [47] | ||
| Synonyms |
SiRNA (convection-enhanced delivery, brain tumor), Sheba Medical Center/BioLineRx
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| MIQ-004 | Investigative | [47] | ||
| Synonyms |
M-IQ-004
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References
: m6A sites