m6A-centered Crosstalk Information
Mechanism of Crosstalk between m6A Modification and Epigenetic Regulation
| Crosstalk ID |
M6ACROT05876
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[1] | |||
m6A modification
OIP5-AS1
OIP5-AS1
IGF2BP2
: m6A sites
Indirect
Inhibition
Non-coding RNA
miR-495-3p
MMP14
lncRNA miRNA circRNA
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| m6A Modification: | |||||
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| m6A Regulator | Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) | READER | |||
| m6A Target | OIP5 antisense RNA 1 (OIP5-AS1) | ||||
| Epigenetic Regulation that have Cross-talk with This m6A Modification: | |||||
| Epigenetic Regulation Type | Non-coding RNA (ncRNA) | ||||
| Epigenetic Regulator | hsa-miR-495-3p | microRNA | View Details | ||
| Regulated Target | Matrix metalloproteinase-14 (MMP14) | View Details | |||
| Crosstalk Relationship | m6A → ncRNA | Inhibition | |||
| Crosstalk Mechanism | m6A regulators indirectly modulate the functionality of ncRNAs through downstream signaling pathways | ||||
| Crosstalk Summary | IGF2BP2 enhances the stability of OIP5 antisense RNA 1 (OIP5-AS1), thereby increasing the binding of OIP5-AS1 to hsa-miR-495-3p, weakening the binding of miR-495-3p to the 3'UTR of HIF1A and Matrix metalloproteinase-14 (MMP14) mRNA, and ultimately promoting the formation of VM in glioma. | ||||
| Responsed Disease | Glioma | ICD-11: 2A00.00 | |||
| Pathway Response | Ubiquitin mediated proteolysis | hsa04120 | |||
| Cell Process | Cell growth | ||||
In-vitro Model |
U-87MG ATCC | Glioblastoma | Homo sapiens | CVCL_0022 | |
| U-251MG | Astrocytoma | Homo sapiens | CVCL_0021 | ||
| In-vivo Model | The nude mice were divided into three groups: Control group, IGF2BP2-Wt and IGF2BP2-3KR. The animals were free to autoclaved food and water during the experiment. 3×105 cells were subcutaneously injected in the right flanks of the mice. Tumor volume was measured every 5 days and the volume was calculated by the formula: volume (mm3) = length width 2 /2.44 days after injection, mice were sacrificed and tumors were isolated. For survival analysis in orthotopic inoculations, 3×105 cells were stereotactically implanted into the right striatum of the mice. The number of survived nude mice was recorded, and survival analysis was performed using Kaplan Meier survival curve. | ||||
Full List of Potential Compound(s) Related to This m6A-centered Crosstalk
| Matrix metalloproteinase-14 (MMP14) | 15 Compound(s) Regulating the Target | Click to Show/Hide the Full List | ||
| Epigallocatechin gallate | Phase 3 | [2] | ||
| Synonyms |
(-)-Epigallocatechin gallate; EGCG; 989-51-5; Epigallocatechin 3-gallate; Epigallocatechin-3-gallate; Tea catechin; (-)-Epigallocatechin-3-o-gallate; Teavigo; Epigallocatechin-3-monogallate; (-)-Epigallocatechol gallate; (2R,3R)-5,7-Dihydroxy-2-(3,4,5-trihydroxyphenyl)chroman-3-yl 3,4,5-trihydroxybenzoate; Catechin deriv; UNII-BQM438CTEL; Green tea extract; CCRIS 3729; (-)-epigallocatechin 3-gallate; C22H18O11; BQM438CTEL; (2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl; EGCG analogs; EGCG, Anagen; Epigallocatechin gallate analogs, Anagen; Epigallocatechin gallate, Anagen; GTPs,Anagen; Green tea polyphenols, Anagen; EPIGALOCATECHIN GALLATE
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| MOA | Inhibitor | |||
| Activity | IC50 = 6800 nM | |||
| External Link | ||||
| BT1718 | Phase 1/2a | [3] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| GM6001 | Discontinued in Phase 2 | [4] | ||
| Synonyms |
Ilomastat; Galardin; 142880-36-2; GM 6001; Illomastat; CS 610; GM-6001; UNII-I0403ML141; CHEMBL19611; Ilomastat (GM6001, Galardin); I0403ML141; NCGC00163450-02; 3-(N-HYDROXYCARBOXAMIDO)-2-ISOBUTYLPROPANOYL-TRP-METHYLAMIDE; (R)-N4-Hydroxy-N1-[(S)-2-(1H-indol-3-yl)-1-methylcarbamoyl-ethyl]-2-isobutyl-succinamide; N-[(2R)-2-(Hydroxamidocarbonylmethyl)-4-methylpentanoyl]-L-tryptophan Methylamide; (R)-N(sup 1)-Hydroxy-N-((S)-2-indol-3-yl-1-(methylcarbamoyl)ethyl)-2-isobutylsuccinamide; (S-(R*,S*))-N(sup 4)-Hydroxy-N(sup
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| MOA | Inhibitor | |||
| Activity | IC50 = 0.41 nM | |||
| External Link | ||||
| DX-2400 | Investigative | [5] | ||
| Synonyms |
DX-2410; MMP inhibitors (fully human antibodies), Dyax
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| MOA | Inhibitor | |||
| External Link | ||||
| PMID23631440C29e | Investigative | [6] | ||
| Synonyms |
GTPL8578; BDBM50433865
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| MOA | Inhibitor | |||
| Activity | Ki = 4 nM | |||
| External Link | ||||
| 2-(biphenyl-4-ylsulfonamido)-N-hydroxyacetamide | Investigative | [7] | ||
| Synonyms |
CHEMBL550148; 3f17; BDBM50294120
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| MOA | Inhibitor | |||
| Activity | IC50 = 70 nM | |||
| External Link | ||||
| 2-(4-bromophenylsulfonamido)-N-hydroxyacetamide | Investigative | [7] | ||
| Synonyms |
CHEMBL1090283; 1218922-39-4; SCHEMBL7413923
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| MOA | Inhibitor | |||
| Activity | IC50 = 360 nM | |||
| External Link | ||||
| N-hydroxy-2-(4-methoxyphenylsulfonamido)acetamide | Investigative | [7] | ||
| Synonyms |
CHEMBL83508; N-Hydroxy-N~2~-[(4-Methoxyphenyl)sulfonyl]glycinamide; Hydroxamate 9; Z79; 3lk8; SCHEMBL7410575; BDBM11328; (4-Methoxyphenylsulfonylamino)acetohydroximic acid
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| MOA | Inhibitor | |||
| Activity | IC50 = 210 nM | |||
| External Link | ||||
| UK-356618 | Investigative | [8] | ||
| Synonyms |
UK 356618; 230961-08-7; CHEMBL117225; UK-356,618; SCHEMBL6437730; GTPL6528; CHEBI:94305; DTXSID50438778; MolPort-023-277-089; ZINC3924338; BDBM50097263; AKOS024458021; FT-0675728; PF 03890101; PF-03890101; UK-356618, > J-014983; BRD-K57011718-001-01-5; (R)-N*1*-[(S)-2,2-Dimethyl-1-((R)-1-phenyl-ethylcarbamoyl)-propyl]-N*4*-hydroxy-2-[3-(2-methyl-biphenyl-4-yl)-propyl]-succinamide
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| MOA | Inhibitor | |||
| Activity | IC50 = 1900 nM | |||
| External Link | ||||
| 2-(Biphenyl-4-ylsulfonyl)N-hydroxybenzamide | Investigative | [9] | ||
| Synonyms |
CHEMBL574589
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| MOA | Inhibitor | |||
| Activity | IC50 = 8300 nM | |||
| External Link | ||||
| [2-(Biphenyl-4-sulfonyl)phenyl]acetic Acid | Investigative | [9] | ||
| Synonyms |
CHEMBL573935
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| MOA | Inhibitor | |||
| Activity | IC50 = 5400 nM | |||
| External Link | ||||
| N-Hydroxy-2-(4-phenoxy-benzenesulfonyl)benzamide | Investigative | [9] | ||
| Synonyms |
CHEMBL575896
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| MOA | Inhibitor | |||
| Activity | IC50 = 1300 nM | |||
| External Link | ||||
| SR-973 | Investigative | [10] | ||
| Synonyms |
CHEMBL204357; SCHEMBL4486832; ZINC34801833; BDBM50182403; (2S,3R)-N1-hydroxy-3-isobutyl-N4-((S)-2-oxo-1-(3-phenoxybenzyl)azepan-3-yl)-2-propylsuccinamide; (2R,3S)-N'-Hydroxy-N-[1-(3-phenoxybenzyl)-2,3,4,5,6,7-hexahydro-2-oxo-1H-azepine-3beta-yl]-2-isobutyl-3-propylbutanediamide
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| MOA | Inhibitor | |||
| Activity | Ki = 1200 nM | |||
| External Link | ||||
| IK-862 | Investigative | [11] | ||
| Synonyms |
YDMIPBHQKFOFQW-NSYGIPOTSA-N; (2R)-N-HYDROXY-2-[(3S)-3-METHYL-3-{4-[(2-METHYLQUINOLIN-4-YL)METHOXY]PHENYL}-2-OXOPYRROLIDIN-1-YL]PROPANAMIDE; CHEMBL148169; CHEBI:40083; (2R)-N-hydroxy-2-[(3S)-3-methyl-3-[4-[(2-methylquinolin-4-yl)methoxy]phenyl]-2-oxopyrrolidin-1-yl]propanamide; IK862; 2fv5; AC1OCAC0; BMCL181958 Compound 1; GTPL8680; SCHEMBL5966106; BDBM26526; IK682; DB07145; C468787000; (R)-2-[(3S)-2-Oxo-3alpha-[4-(2-methyl-4-quinolinylmethoxy)phenyl]-3-methylpyrrolizino]propanehydroximic; IK 862; compound 32; IK-682
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| MOA | Inhibitor | |||
| Activity | Ki = 15872 nM | |||
| External Link | ||||
| MMI270 | Investigative | [12] | ||
| Synonyms |
CGS-27023A; CGS-27023; UNII-80AXY59IT2; 80AXY59IT2; N-HYDROXY-2(R)-[[(4-METHOXYPHENYL)SULFONYL](3-PICOLYL)AMINO]-3-METHYLBUTANAMIDE HYDROCHLORIDE; CHEMBL514138; (2R)-N-hydroxy-2-[(4-methoxyphenyl)sulfonyl-(pyridin-3-ylmethyl)amino]-3-methylbutanamide; CGS; 1eub; MMI270B free base; hydroxamate analogue 1; 2w0d; 1bm6; MMI-270B free base; AC1L9JQY; 3MP-HAV-MSB; CGS-27023A free base; BMCL16311 Compound 1a; BDBM8465; SCHEMBL3468445; GTPL8846; CHEMBL267178; BSIZUMJRKYHEBR-QGZVFWFLSA-N; CGS 27023; BDBM50066658; DB07556; 161314-70-1
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| MOA | Inhibitor | |||
| Activity | IC50 = 7.5 nM | |||
| External Link | ||||
| 2A00: Brain cancer | 53 Compound(s) Regulating the Disease | Click to Show/Hide the Full List | ||
| Zinostatin stimalamer | Approved | [13] | ||
| Synonyms |
Smancs (TN)
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| External Link | ||||
| Motexafin gadolinium | Approved | [14] | ||
| Synonyms |
Xcytrin; Gadolinium texaphyrin; GdT2B2; GD-Tex; Motexafin gadolinium (USAN); PCI-0120; Xcytrin (TN)
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| External Link | ||||
| Lomustine | Approved | [15] | ||
| Synonyms |
Belustine; CCNU; CINU; Cecenu; CeeNU; Chloroethylcyclohexylnitrosourea; Lomustina; Lomustinum; Bristol Myers Squibb Brand of Lomustine; CCNU [Chloroethyl nitrosoureas]; Cyclohexyl chloroethyl nitrosourea; Lomustine medac Brand; Medac Brand of Lomustine; Rhone Poulenc Rorer Brand of Lomustine; OR5087; RB 1509; SRI 2200; Bristol-Myers Squibb Brand of Lomustine; CeeNU (TN); Lomustina [INN-Spanish]; Lomustinum [INN-Latin]; NPFAPI-06; Rhone-Poulenc Rorer Brand of Lomustine; CeeNU, CCNU, Lomustine; Lomustine (USAN/INN); Lomustine [USAN:BAN:INN]; N-(2-Chloroethyl)-N'-cyclohexyl-N-nitrosourea; (Chloro-2-ethyl)-1-cyclohexyl-3-nitrosourea; (Cloro-2-etil)-1-cicloesil-3-nitrosourea; (Cloro-2-etil)-1-cicloesil-3-nitrosourea [Italian];1-(2-Chloroethyl)-3-cyclohexyl-1-nitrosourea; 1-(2-Chloroethyl)-3-cyclohexyl-1-nitrosourea [Chloroethyl nitrosoureas]; 1-(2-Chloroethyl)-3-cyclohexylnitrosourea
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| External Link | ||||
| Borocaptate sodium B 10 | Approved | [13] | ||
| External Link | ||||
| DTI-015 | Approved | [16] | ||
| Synonyms |
Carmustine; 154-93-8; 1,3-Bis(2-chloroethyl)-1-nitrosourea; BCNU; Carmustin; Nitrumon; Carmubris; Gliadel; BiCNU; Bi CNU; Carmustinum; Bischlorethylnitrosurea; Bischlorethylnitrosourea; Carmustina; Becenun; Becenum; Bischloroethyl nitrosourea; N,N'-BIS(2-CHLOROETHYL)-N-NITROSOUREA; Bis(2-chloroethyl)nitrosourea; Urea, N,N'-bis(2-chloroethyl)-N-nitroso-; Gliadel Wafer; FDA 0345; Bischloroethylnitrosourea; SRI 1720; 1,3-Bis(2-chloroethyl)nitrosourea; BiCNU (TN); Carmustinum [INN-Latin]; Carmustina [INN-Spanish]; DTI 015; NCI-C04773; SK; Injectable carmustine, Direct Therapeutics
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| External Link | ||||
| Prinomastat | Approved | [17] | ||
| Synonyms |
AG-3354; AG-3362; Prinomastat (USAN/INN); (3S)-N-hydroxy-2,2-dimethyl-4-(4-pyridin-4-yloxyphenyl)sulfonylthiomorpholine-3-carboxamide
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| External Link | ||||
| INO-1001 | Phase 3 | [18] | ||
| Synonyms |
Hypoxanthine arabinoside; LT00454797; 9-[(3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-3H-purin-6-one
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| GliAtak | Phase 3 | [19] | ||
| Synonyms |
GliAtak (TN)
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| SOT-107 | Phase 3 | [20] | ||
| Synonyms |
TransMID
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| ICT-107 | Phase 3 | [21] | ||
| External Link | ||||
| Cintredekin besudotox | Phase 3 | [22] | ||
| External Link | ||||
| Rindopepimut | Phase 3 | [23] | ||
| External Link | ||||
| DCVax-Ovarian | Phase 3 | [24] | ||
| Synonyms |
DCVax-L; Dendritic cell-based immunotherapy (ovarian cancer), Northwest Biotherapeutics
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| DCVax-Brain | Phase 3 | [25] | ||
| Synonyms |
Dendritic cell-based immunotherapy (brain cancer), Northwest Biotherapeutics
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| TVI-Brain-1 | Phase 2/3 | [26] | ||
| External Link | ||||
| NLG8189 | Phase 2/3 | [27] | ||
| Synonyms |
1-Methyl-D-tryptophan; Indoximod; 110117-83-4; D-Tryptophan, 1-methyl-; D-1MT; Indoximod (NLG-8189); D-1-methyltryptophan; UNII-TX5CYN1KMZ; D-(+)-1-Methyltryptophan; TX5CYN1KMZ; (R)-2-amino-3-(1-methyl-1H-indol-3-yl)propanoic acid; (2R)-2-amino-3-(1-methylindol-3-yl)propanoic acid; NSC-721782; (2R)-2-amino-3-(1-methyl-3-indolyl)propanoic acid; 1-MT; (2R)-2-azanyl-3-(1-methylindol-3-yl)propanoic acid; (2R)-2-amino-3-(1-methyl-1H-indol-3-yl)propanoic acid; D-l-Methyltryptophan; Indoximod [USAN:INN]; NLG-8189; NLG 8189
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| Synthetic survivin peptide vaccine | Phase 2 | [28] | ||
| External Link | ||||
| Fresolimumab | Phase 2 | [29] | ||
| Synonyms |
GC-1008
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| DNX-2401 | Phase 2 | [30] | ||
| Synonyms |
Tasadenoturev
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| TVI-Brain-1 cancer vaccine | Phase 2 | [31] | ||
| External Link | ||||
| PDT with Photofrin | Phase 2 | [27] | ||
| External Link | ||||
| F18-ML-10 | Phase 2 | [32] | ||
| External Link | ||||
| PT2385 | Phase 2 | [33] | ||
| Synonyms |
ONBSHRSJOPSEGS-INIZCTEOSA-N; PT-2385; UNII-6O16716DXP; 1672665-49-4; 6O16716DXP; SCHEMBL16555810; ZINC230453533; AKOS030526641; HY-12867; PT2385,1672665-49-4, PT 2385,PT-2385; Benzonitrile, 3-(((1S)-2,2-difluoro-2,3-dihydro-1-hydroxy-7-(methylsulfonyl)-1H-inden-4-yl)oxy)-5-fluoro-; 3-{[(1s)-2,2-Difluoro-1-Hydroxy-7-(Methylsulfonyl)-2,3-Dihydro-1h-Inden-4-Yl]oxy}-5-Fluorobenzonitrile; 3-(((1S)-2,2-Difluoro-1-hydroxy-7-methanesulfonyl-2,3-dihydro-1hinden-4-yl)oxy)-5-fluorobenzonitrile; 79A
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| ABT-414 | Phase 2 | [34] | ||
| External Link | ||||
| CLR1404-I-124 | Phase 1/2 | [35] | ||
| External Link | ||||
| DM-CHOC-PEN | Phase 2 | [36] | ||
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| L-alanosine | Phase 2 | [37] | ||
| Synonyms |
SDX-102
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| APX005M | Phase 2 | [27] | ||
| External Link | ||||
| WP-1066 | Phase 1/2 | [31] | ||
| Synonyms |
WP1066; 857064-38-1; (S,E)-3-(6-Bromopyridin-2-yl)-2-cyano-N-(1-phenylethyl)acrylamide; WP 1066; UNII-63V8AIE65T; 63V8AIE65T; AK-99218; C17H14BrN3O; (E)-3-(6-bromopyridin-2-yl)-2-cyano-N-[(1S)-1-phenylethyl]prop-2-enamide; MLS006010178; SCHEMBL1315826; QCR-16; SCHEMBL1315831; GTPL7972; CHEMBL1923234; EX-A760; AOB1497; DTXSID50235007; MolPort-044-723-708; MolPort-023-219-149; ZINC13983221; AKOS016007983; WP1066/WP-1066; CS-2736; DB12679; 2-Propenamide, 3-(6-bromo-2-pyridinyl)-2-cyano-N-((1S)-1-phenylethyl)-, (2E)-; HY-15312
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| Anti-EGFRvIII CAR transduced PBL | Phase 1/2 | [38] | ||
| External Link | ||||
| RG6156 | Phase 1 | [39] | ||
| External Link | ||||
| rhenium-186 | Phase 1 | [40] | ||
| Synonyms |
(~186~Re)Rhenium; 14998-63-1; 186Re; DTXSID60933825; Q18882928; RHENIUM (186-RE); Rhenium Re-186; Rhenium, isotope of mass 186; Rhenium-186; RHENIUM-186 [WHO-DD]; UNII-ZU7F1ET6TM; ZU7F1ET6TM
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| IGV-001 | Phase 1 | [41] | ||
| External Link | ||||
| DA-3607 | Phase 1 | [42] | ||
| Synonyms |
Ad-stTRAIL; TRAIL adenoviral gene therapy (cancer), Dong-A
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| DC/I540/KLH vaccine | Phase 1 | [43] | ||
| Synonyms |
HTERT:540-548; Telomerase: 540-548 peptide vaccine; DC/I540/KLH vaccine (cancer); Dendritic cell/hTERT peptide I540/keyhole limpet hemocyanin vaccine, Dana-Farber; DC/I540/KLH vaccine (cancer), Dana-Farber
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| KX2-361 | Phase 1 | [44] | ||
| Synonyms |
KX-02
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| MR1-1 | Phase 1 | [45] | ||
| Synonyms |
MR1-1KDEL; EGFR-specific immunotoxin, IVAX; Anticancer immunotoxin (EGFR-specific), IVAX
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| INdoximod + temozolomide | Phase 1 | [31] | ||
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| Anti-CD133-CAR vector-transduced T cells | Phase 1 | [46] | ||
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| 8H9 | Phase 1 | [47] | ||
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| CC-8490 | Phase 1 | [48] | ||
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| Sitimagene ceradenovec | Discontinued in Phase 3 | [49] | ||
| Synonyms |
Cerepro; EG-009; HSV thymidine kinase gene therapy, Ark
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| Ranagengliotucel-T | Discontinued in Phase 3 | [50] | ||
| Synonyms |
Glionix; Brain tumor vaccine, NovaRx; Antisense (TGFbeta) brain tumor vaccine, NovaRx
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| Oncolysin S | Discontinued in Phase 2 | [51] | ||
| Synonyms |
N901-bR
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| Labradimil | Discontinued in Phase 2 | [52] | ||
| Synonyms |
Cereport; Lobradimil; Receptor mediated permeabilizer; RMP 7; DRG-0182; RMP-7; N2-((S)-2-(L-Arginyl-L-prolyl-trans-4-hydroxy-L-prolylglycyl-3-(2-thienyl)-L-alanyl-L-seryl-L-prolinamido)-3-(p-methoxyphenyl)propyl)-L-arginine; (S-(R*,R*))-L-Arginyl-L-prolyl-trans-4-hydroxy-L-prolyl-3-(2-thienyl)-L-alanylglycyl-L-seryl-N-(2-((4-((aminoiminomethyl)amino)-1-carboxybutyl)amino)-1-((4-methoxyphenyl)methyl)ethyl)-L-prolinamide
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| Brain tumor vaccine | Discontinued in Phase 1 | [53] | ||
| Synonyms |
Brain cancer vaccine, IRC; Brain tumor vaccine, IRC; IR-850; Established cancer cell line therapy (brain cancer), IRC; GM-CSF vaccine (brain cancer), IRC
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| PCNU | Terminated | [54] | ||
| Synonyms |
NSC-95466
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| 131I-81C6 | Terminated | [55] | ||
| Synonyms |
Neuradiab; MAb-81C6; Iodine-131-81C6; Astatine-211-MAb-81C6; Iodine-131-MAb-81C6; Iodine-131-ch-81C6; Iodine-131-ch-81C6-F(ab)2; 211At-MAb-81C6
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| NSD-551 | Terminated | [56] | ||
| Synonyms |
BK channel activator (cancer), NeuroSearch/TopoTarget
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| AGT-2000 | Investigative | [57] | ||
| Synonyms |
Gene therapy (intravenous, brain cancer), ArmaGen
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| NV.XOD.09 | Investigative | [58] | ||
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| EDP-19 | Investigative | [58] | ||
| Synonyms |
SiRNA (convection-enhanced delivery, brain tumor), Sheba Medical Center/BioLineRx
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| MIQ-004 | Investigative | [58] | ||
| Synonyms |
M-IQ-004
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References
: m6A sites