m6A-centered Crosstalk Information
Mechanism of Crosstalk between m6A Modification and Epigenetic Regulation
| Crosstalk ID |
M6ACROT03165
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[1] | |||
m6A modification
EED
EED
METTL3
Methylation
: m6A sites
Indirect
Inhibition
Histone modification
H3K27me3
EZH2
Downstream Gene
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| m6A Modification: | |||||
|---|---|---|---|---|---|
| m6A Regulator | Methyltransferase-like 3 (METTL3) | WRITER | |||
| m6A Target | Polycomb protein EED (EED) | ||||
| Epigenetic Regulation that have Cross-talk with This m6A Modification: | |||||
| Epigenetic Regulation Type | Histone modification (HistMod) | ||||
| Epigenetic Regulator | Histone-lysine N-methyltransferase EZH2 (EZH2) | WRITER | View Details | ||
| Regulated Target | Histone H3 lysine 27 trimethylation (H3K27me3) | View Details | |||
| Crosstalk Relationship | m6A → Histone modification | Inhibition | |||
| Crosstalk Mechanism | m6A modification indirectly regulates histone modification through downstream signaling pathways | ||||
| Crosstalk Summary | METTL3 deletion in the endometrium alters mRNA m6A methylation via Polycomb protein EED (EED) interaction. This reduces m6A recognized by YTHDC1, which recruits Eed to suppress EZH2-mediated Histone H3 lysine 27 trimethylation (H3K27me3) modification co-transcriptionally. The reduction of H3K27me3 disrupts chromatin accessibility and impairs transcription of genes critical for endometrial receptivity. Collectively, these results shed light on a Mettl3-Eed-m6A-Ythdc1 axis that links m6A and histone modification in regulating local chromatin state and gene expression, advancing our understanding of the epigenetic crosstalk between RNA and DNA modification in infertility disease. | ||||
Full List of Potential Compound(s) Related to This m6A-centered Crosstalk
| Histone-lysine N-methyltransferase EZH2 (EZH2) | 74 Compound(s) Regulating the Target | Click to Show/Hide the Full List | ||
| Tazemetostat | Approved | [2] | ||
| Synonyms |
EPZ-6438; 1403254-99-8; EPZ6438; UNII-Q40W93WPE1; N-((4,6-dimethyl-2-oxo-1,2-dihydropyridin-3-yl)methyl)-5-(ethyl(tetrahydro-2H-pyran-4-yl)amino)-4-methyl-4'-(morpholinomethyl)-[1,1'-biphenyl]-3-carboxamide; Q40W93WPE1; EPZ 6438; E7438; (1,1'-Biphenyl)-3-carboxamide, N-((1,2-dihydro-4,6-dimethyl-2-oxo-3-pyridinyl)methyl)-5-(ethyl(tetrahydro-2H-pyran-4-yl)amino)-4-methyl-4'-(4-morpholinylmethyl)-
Click to Show/Hide
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| MOA | Inhibitor | |||
| Activity | Ki = 2.5 nM | |||
| External Link | ||||
| DS-3201b | Phase 2 | [3] | ||
| Synonyms |
Valemetostat; 1809336-39-7; UNII-60RD0234VE; 60RD0234VE; 1809336-39-7 (free base); DS-3201; (2R)-7-chloro-2-[trans-4-(dimethylamino)cyclohexyl]-N-[(4,6-dimethyl-2-oxo-1,2-dihydropyridin-3-yl)methyl]-2,4-dimethyl-1,3-benzodioxole-5-carboxamide; Valemetostat 2HCl; Valemetostat [INN]; Valemetostat (DS-3201); CHEMBL4597193; EZH1/2 inhibitor DS-3201; SCHEMBL18393626; SCHEMBL18393627; SCHEMBL18639210; EX-A3423; DS3201; NSC813381; s8926; NSC-813381; HY-109108; CS-0039740; D11551
Click to Show/Hide
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| MOA | Inhibitor | |||
| External Link | ||||
| CPI-1205 | Phase 1/2 | [4] | ||
| Synonyms |
HPODOLXTMDHLLC-QGZVFWFLSA-N; 1621862-70-1; UNII-455J2479FY; CPI1205; CPI 1205; 455J2479FY; (R)-N-((4-methoxy-6-methyl-2-oxo-1,2-dihydropyridin-3-yl)methyl)-2-methyl-1-(1-(1-(2,2,2-trifluoroethyl)piperidin-4-yl)ethyl)-1H-indole-3-carboxamide; GTPL9115; SCHEMBL17329268; MolPort-044-560-382; KS-000006BA; EX-A1068; s8353; AKOS030628484; ZINC220982768; CS-7648; compound 13 [PMID: 27739677]; HY-100021; J3.556.402K; N-[(4-methoxy-6-methyl-2-oxo-1H-pyridin-3-yl)methyl]-2-methyl-1-[(1R)-1-[1-(2,2,2-trifluoroethyl)piperidin-4-
Click to Show/Hide
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| MOA | Inhibitor | |||
| External Link | ||||
| SHR2554 | Phase 1/2 | [5] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| CPI-0209 | Phase 1/2 | [6] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| GSK2816126 | Phase 1 | [7] | ||
| Synonyms |
GSK 126; GSK-126
Click to Show/Hide
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| MOA | Modulator | |||
| Activity | Ki = 0.5 nM | |||
| External Link | ||||
| PF-06821497 | Phase 1 | [8] | ||
| Synonyms |
UNII-S4L4MM20B6; S4L4MM20B6; CHEMBL4080228; PF06821497; 1844849-10-0; 5,8-dichloro-2-[(4-methoxy-6-methyl-2-oxo-1,2-dihydropyridin-3-yl)methyl]-7-[(R)-methoxy(oxetan-3-yl)methyl]-3,4-dihydroisoquinolin-1(2H)-one; SCHEMBL17330426; GTPL10516; BDBM50246967; NSC800019; DB14799; HY-101571A; NSC-800019; compound 23a [PMID: 29211475]; CS-0092626; Q29209799; 1(2H)-Isoquinolinone, 5,8-dichloro-2-((1,2-dihydro-4-methoxy-6-methyl-2-oxo-3-pyridinyl)methyl)-3,4-dihydro-7-((R)-methoxy-3-oxetanylmethyl)-; 5,8-dichloro-2-[(4-methoxy-6-methyl-2-oxo-1H-pyridin-3-yl)methyl]-7-[(R)-methoxy(oxetan-3-yl)methyl]-3,4-dihydroisoquinolin-1-one; CJD
Click to Show/Hide
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| MOA | Inhibitor | |||
| External Link | ||||
| DS-3201 | Phase 1 | [4] | ||
| Synonyms |
QTGYNKYZRZATJB-UHFFFAOYSA-N; 701899-63-0; 2-(2-(2-Methyl-1H-imidazol-5-yl)ethyl)isoindoline-1,3-dione; 2-(2-(2-Methyl-1H-imidazol-5-yl)-ethyl)isoindoline-1,3-dione; SCHEMBL7743461; MolPort-035-945-474; MolPort-035-690-353; ZINC98086069; AKOS024459002; AKOS024262663; MCULE-2708350770; FCH4077443; AK158834; AX8292467; ST2403812; 2-[2-(2-methyl-1H-imidazol-5-yl)ethyl]-2,3-dihydro-1H-isoindole-1,3-dione
Click to Show/Hide
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| MOA | Inhibitor | |||
| External Link | ||||
| HH2853 | Phase 1 | [9] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-33 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 100 nM | |||
| External Link | ||||
| PMID28394193-Compound-Figure3bI | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-35 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 10 nM | |||
| External Link | ||||
| PMID28394193-Compound-54 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-24 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 < 1000 nM | |||
| External Link | ||||
| PMID28394193-Compound-27 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 < 1000 nM | |||
| External Link | ||||
| PMID28394193-Compound-25 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 < 1000 nM | |||
| External Link | ||||
| PMID28394193-Compound-50 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 > 1 nM; IC50 < 2 nM; Ki > 0.01 nM; Ki < 0.04 nM | |||
| External Link | ||||
| PMID28394193-Compound-47 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 2 nM; Ki < 1 nM | |||
| External Link | ||||
| PMID28394193-Compound-21 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-41 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-53 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 80 nM | |||
| External Link | ||||
| PMID28394193-Compound-Figure5aVIII | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-38 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-51 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 > 1 nM; IC50 < 2 nM; Ki > 0.01 nM; Ki < 0.04 nM | |||
| External Link | ||||
| PMID28394193-Compound-31 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 20 nM | |||
| External Link | ||||
| PMID28394193-Compound-42 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-15 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-52 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 > 1 nM; IC50 < 2 nM; Ki > 0.01 nM; Ki < 0.04 nM | |||
| External Link | ||||
| PMID28394193-Compound-32 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 500 nM | |||
| External Link | ||||
| PMID28394193-Compound-23 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 < 1000 nM | |||
| External Link | ||||
| PMID28394193-Compound-29 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 100 nM | |||
| External Link | ||||
| PMID28394193-Compound-30 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 16 nM | |||
| External Link | ||||
| PMID28394193-Compound-39 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-49 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 > 1 nM; IC50 < 2 nM; Ki > 0.01 nM; Ki < 0.04 nM | |||
| External Link | ||||
| PMID28394193-Compound-43 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-40 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-Figure3bIII | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-36 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 316 nM | |||
| External Link | ||||
| PMID28394193-Compound-28 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 32 nM | |||
| External Link | ||||
| PMID28394193-Compound-22 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-18 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-16 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-44 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-20 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-19 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-37 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-Figure3bII | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-26 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 < 1000 nM | |||
| External Link | ||||
| PMID28394193-Compound-17 | Patented | [10] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-34 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 100 nM | |||
| External Link | ||||
| PMID28394193-Compound-56 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 0.93 nM | |||
| External Link | ||||
| PMID28394193-Compound-46 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 5 nM | |||
| External Link | ||||
| PMID28394193-Compound-57 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 6.45 nM | |||
| External Link | ||||
| PMID28394193-Compound-14 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 21900 nM | |||
| External Link | ||||
| PMID28394193-Compound-12 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 < 10 nM | |||
| External Link | ||||
| PMID26882240-Compound-1 | Patented | [11] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| PMID28394193-Compound-55 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 8.13 nM | |||
| External Link | ||||
| PMID28394193-Compound-45 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 168000 nM | |||
| External Link | ||||
| PMID28394193-Compound-13 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 1470 nM | |||
| External Link | ||||
| EPZ005687 | Investigative | [12] | ||
| Synonyms |
EPZ-005687; EPZ 005687
Click to Show/Hide
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| MOA | Inhibitor | |||
| External Link | ||||
| EI1 | Investigative | [13] | ||
| Synonyms |
KB-145943
Click to Show/Hide
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| MOA | Inhibitor | |||
| External Link | ||||
| UNC1999 | Investigative | [14] | ||
| Synonyms |
UNC 1999; UNC-1999
Click to Show/Hide
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| MOA | Inhibitor | |||
| External Link | ||||
| MS1943 | Investigative | [5] | ||
| Synonyms |
2225938-17-8; SCHEMBL21271666; EX-A3962; s8918; HY-133129; CS-0112146; 6-(6-(4-(2-(2-((3r,5r,7r)-adamantan-1-yl)acetamido)ethyl)piperazin-1-yl)pyridin-3-yl)-N-((4,6-dimethyl-2-oxo-1,2-dihydropyridin-3-yl)methyl)-1-isopropyl-1H-indazole-4-carboxamide; 6-(6-(4-(2-(2-(Adamantan-1-yl)acetamido)ethyl)piperazin-1-yl)pyridin-3-yl)-N-((4,6-dimethyl-2-oxo-1,2-dihydropyridin-3-yl)methyl)-1-isopropyl-1H-indazole-4-carboxamide
Click to Show/Hide
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| MOA | Degrader | |||
| External Link | ||||
| GSK343 | Investigative | [15] | ||
| Synonyms |
compound 6 [PMID 24900432]; GSK 343
Click to Show/Hide
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| MOA | Inhibitor | |||
| Activity | IC50 = 174 nM | |||
| External Link | ||||
| PMID28394193-Compound-11 | Patented | [16] | ||
| External Link | ||||
| PMID28394193-Compound-10 | Patented | [16] | ||
| External Link | ||||
| PMID28394193-Compound-14 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 21900 nM | |||
| External Link | ||||
| PMID28394193-Compound-12 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 < 10 nM | |||
| External Link | ||||
| PMID28394193-Compound-13 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 1470 nM | |||
| External Link | ||||
| PMID28394193-Compound-56 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 0.93 nM | |||
| External Link | ||||
| PMID28394193-Compound-46 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 5 nM | |||
| External Link | ||||
| PMID28394193-Compound-57 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 6.45 nM | |||
| External Link | ||||
| PMID28394193-Compound-55 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 8.13 nM | |||
| External Link | ||||
| PMID28394193-Compound-45 | Patented | [10] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 168000 nM | |||
| External Link | ||||
| Polycomb protein EED (EED) | 3 Compound(s) Regulating the Target | Click to Show/Hide the Full List | ||
| MAK683 | Phase 1/2 | [4] | ||
| Synonyms |
XLIBABIFOBYHSV-UHFFFAOYSA-N; EED inhibitor-1; 1951408-58-4; MAK-683; N-[(5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]-8-(2-methylpyridin-3-yl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine; N-((5-fluoro-2,3-dihydrobenzofuran-4-yl)methyl)-8-(2-methylpyridin-3-yl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine; SCHEMBL17841485; EX-A1723; BCP29116; ACN-053195; CS-8054; AC-30344; HY-103663
Click to Show/Hide
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| MOA | Inhibitor | |||
| External Link | ||||
| ORIC-944 | Phase 1 | [17] | ||
| MOA | Inhibitor | |||
| External Link | ||||
| A-395 | Investigative | [18] | ||
| Synonyms |
CHEMBL4104741; (3R,4S)-1-(7-fluoro-2,3-dihydro-1H-inden-1-yl)-N,N-dimethyl-4-(4-(4-(methylsulfonyl)piperazin-1-yl)phenyl)pyrrolidin-3-amine; GTPL9525; SCHEMBL19549392; BDBM223987; BDBM50241662; A-395 hydrochloride, >=98% (HPLC); HY-101512; CS-0021615; J3.609.234C; A-395 (5); A392089148-72-9; (3R,4S)-1-(7-fluoro-2,3-dihydro-1H-inden-1-yl)-N,N-dimethyl-4-[4-(4-methylsulfonylpiperazin-1-yl)phenyl]pyrrolidin-3-amine; 2089148-71-8; rac-(3R,4S)-1-(7-fluoro-2,3-dihydro-1H-inden-1-yl)-N,N-dimethyl-4-(4-(4-(methylsulfonyl)piperazin-1-yl)phenyl)pyrrolidin-3-amine (4); rel-(3R,4S)-1-(7-Fluoro-2,3-dihydro-1H-inden-1-yl)-N,N-dimethyl-4-(4-(4-(methylsulfonyl)piperazin-1-yl)phenyl)pyrrolidin-3-amine
Click to Show/Hide
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| MOA | Inhibitor | |||
| External Link | ||||
References
: m6A sites