General Information of the m6A Target Gene (ID: M6ATAR00492)
Target Name Leukocyte surface antigen CD47 (CD47)
Synonyms
Antigenic surface determinant protein OA3; Integrin-associated protein; IAP; Protein MER6; CD47
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Gene Name CD47
Chromosomal Location 3q13.12
Function
Has a role in both cell adhesion by acting as an adhesion receptor for THBS1 on platelets, and in the modulation of integrins. Plays an important role in memory formation and synaptic plasticity in the hippocampus (By similarity). Receptor for SIRPA, binding to which prevents maturation of immature dendritic cells and inhibits cytokine production by mature dendritic cells. Interaction with SIRPG mediates cell-cell adhesion, enhances superantigen-dependent T-cell-mediated proliferation and costimulates T-cell activation. May play a role in membrane transport and/or integrin dependent signal transduction. May prevent premature elimination of red blood cells. May be involved in membrane permeability changes induced following virus infection.
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Gene ID 961
Uniprot ID
CD47_HUMAN
HGNC ID
HGNC:1682
Ensembl Gene ID
ENSG00000196776
KEGG ID
hsa:961
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
CD47 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
Methyltransferase-like 3 (METTL3) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by METTL3
Cell Line Caco-2 cell line Homo sapiens
Treatment: shMETTL3 Caco-2 cells
Control: shNTC Caco-2 cells
GSE167075
Regulation
logFC: 1.18E+00
p-value: 9.07E-25
More Results Click to View More RNA-seq Results
Representative RIP-seq result supporting the interaction between CD47 and the regulator
Cell Line MDA-MB-231 Homo sapiens
Regulation logFC: 4.98E+00 GSE60213
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary METTL3/IGF2BP1/Leukocyte surface antigen CD47 (CD47) mediated EMT transition contributes to the incomplete ablation induced metastasis in HCC cells.
Target Regulation Up regulation
Responsed Disease Hepatocellular carcinoma ICD-11: 2C12.02
Cell Process Epithelial-mesenchymal transition
In-vitro Model Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
HCCLM3 Adult hepatocellular carcinoma Homo sapiens CVCL_6832
Insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1) [READER]
Representative RNA-seq result indicating the expression of this target gene regulated by IGF2BP1
Cell Line PANC-1 cell line Homo sapiens
Treatment: siIGF2BP1 PANC-1 cells
Control: siControl PANC-1 cells
GSE161087
Regulation
logFC: -8.42E-01
p-value: 5.16E-03
More Results Click to View More RNA-seq Results
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary METTL3/IGF2BP1/Leukocyte surface antigen CD47 (CD47) mediated EMT transition contributes to the incomplete ablation induced metastasis in HCC cells.
Target Regulation Up regulation
Responsed Disease Hepatocellular carcinoma ICD-11: 2C12.02
Cell Process Epithelial-mesenchymal transition
In-vitro Model Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
HCCLM3 Adult hepatocellular carcinoma Homo sapiens CVCL_6832
Liver cancer [ICD-11: 2C12]
In total 2 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary METTL3/IGF2BP1/Leukocyte surface antigen CD47 (CD47) mediated EMT transition contributes to the incomplete ablation induced metastasis in HCC cells.
Responsed Disease Hepatocellular carcinoma [ICD-11: 2C12.02]
Target Regulator Insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1) READER
Target Regulation Up regulation
Cell Process Epithelial-mesenchymal transition
In-vitro Model Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
HCCLM3 Adult hepatocellular carcinoma Homo sapiens CVCL_6832
Experiment 2 Reporting the m6A-centered Disease Response [1]
Response Summary METTL3/IGF2BP1/Leukocyte surface antigen CD47 (CD47) mediated EMT transition contributes to the incomplete ablation induced metastasis in HCC cells.
Responsed Disease Hepatocellular carcinoma [ICD-11: 2C12.02]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Up regulation
Cell Process Epithelial-mesenchymal transition
In-vitro Model Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
HCCLM3 Adult hepatocellular carcinoma Homo sapiens CVCL_6832
References
Ref 1 METTL3/IGF2BP1/CD47 contributes to the sublethal heat treatment induced mesenchymal transition in HCC. Biochem Biophys Res Commun. 2021 Mar 26;546:169-177. doi: 10.1016/j.bbrc.2021.01.085. Epub 2021 Feb 12.