m6A Target Genes of This Regulator

General Information of the m6A Regulator (ID: REG00025)
Regulator Name YTH domain-containing family protein 3 (YTHDF3)
Synonyms
DF3
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Gene Name YTHDF3
Regulator Type ERASER READER WRITER
Regulator Link Click to View Full Information of This Regulator
Full List of Target Gene(s) of This m6A Regulator ( Full Data Download )
Protein coding
Gene with protein product
In total 5615 target gene(s)
1-acylglycerol-3-phosphate O-acyltransferase 3 (AGPAT3) [1]
HGNC ID HGNC:326
Ensembl ID ENSG00000160216
Uniprot ID PLCC_HUMAN
Method RIP-seq logFC: 1.90E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
1-acylglycerol-3-phosphate O-acyltransferase 5 (AGPAT5) [1]
HGNC ID HGNC:20886
Ensembl ID ENSG00000155189
Uniprot ID PLCE_HUMAN
Method RIP-seq logFC: 1.28E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
2'-5'-oligoadenylate synthetase 3 (OAS3) [1]
HGNC ID HGNC:8088
Ensembl ID ENSG00000111331
Uniprot ID OAS3_HUMAN
Method RIP-seq logFC: 1.77E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
2-aminoethanethiol dioxygenase (ADO) [1]
HGNC ID HGNC:23506
Ensembl ID ENSG00000181915
Uniprot ID AEDO_HUMAN
Method RIP-seq logFC: 1.87E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
2-phosphoxylose phosphatase 1 (PXYLP1) [1]
HGNC ID HGNC:26303
Ensembl ID ENSG00000155893
Uniprot ID PXYP1_HUMAN
Method RIP-seq logFC: 1.87E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
3'(2'), 5'-bisphosphate nucleotidase 2 (IMPAD1) [1]
HGNC ID HGNC:26019
Ensembl ID ENSG00000104331
Uniprot ID IMPA3_HUMAN
Method RIP-seq logFC: 1.23E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
3-oxoacid CoA-transferase 2 (OXCT2) [1]
HGNC ID HGNC:18606
Ensembl ID ENSG00000198754
Uniprot ID SCOT2_HUMAN
Method RIP-seq logFC: 1.64E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
3-oxoacyl-ACP synthase, mitochondrial (OXSM) [1]
HGNC ID HGNC:26063
Ensembl ID ENSG00000151093
Uniprot ID OXSM_HUMAN
Method RIP-seq logFC: 1.92E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
3-phosphoinositide dependent protein kinase 1 (PDPK1) [1]
HGNC ID HGNC:8816
Ensembl ID ENSG00000140992
Uniprot ID PDPK1_HUMAN
Method RIP-seq logFC: 2.29E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
4-hydroxyphenylpyruvate dioxygenase like (HPDL) [1]
HGNC ID HGNC:28242
Ensembl ID ENSG00000186603
Uniprot ID HPDL_HUMAN
Method RIP-seq logFC: 1.60E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Pseudogene
Pseudogene
In total 552 target gene(s)
3-phosphoinositide dependent protein kinase 2, pseudogene (PDPK2P) [1]
HGNC ID HGNC:49897
Ensembl ID ENSG00000205918
Uniprot ID PDPK2_HUMAN
Method RIP-seq logFC: 4.12E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
5-hydroxytryptamine receptor 7 pseudogene 1 (HTR7P1) [1]
HGNC ID HGNC:30411
Ensembl ID ENSG00000183935
Method RIP-seq logFC: 2.37E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ABHD17A pseudogene 1 (ABHD17AP1) [1]
HGNC ID HGNC:28394
Ensembl ID ENSG00000198658
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Acetoacetyl-CoA synthetase pseudogene 1 (AACSP1) [1]
HGNC ID HGNC:18226
Ensembl ID ENSG00000250420
Method RIP-seq logFC: 1.04E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Actin gamma 1 pseudogene 1 (ACTG1P1) [1]
HGNC ID HGNC:146
Ensembl ID ENSG00000178631
Method RIP-seq logFC: 3.76E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Actin gamma 1 pseudogene 10 (ACTG1P10) [1]
HGNC ID HGNC:155
Ensembl ID ENSG00000231340
Method RIP-seq logFC: 5.88E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Actin gamma 1 pseudogene 20 (ACTG1P20) [1]
HGNC ID HGNC:51500
Ensembl ID ENSG00000241547
Method RIP-seq logFC: 1.45E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
actin gamma 1 pseudogene 25 (RP11-480I12.9) [1]
HGNC ID HGNC:54872
Ensembl ID ENSG00000234996
Method RIP-seq logFC: 1.77E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Actin related protein 2/3 complex subunit 3 pseudogene 1 (ARPC3P1) [1]
HGNC ID HGNC:16092
Ensembl ID ENSG00000226284
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ADAM metallopeptidase domain 21 pseudogene 1 (ADAM21P1) [1]
HGNC ID HGNC:19822
Ensembl ID ENSG00000235812
Method RIP-seq logFC: 2.50E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Long non-coding
Long non-coding RNA
In total 684 target gene(s)
A1BG antisense RNA 1 (A1BG-AS1) [1]
HGNC ID HGNC:37133
Ensembl ID ENSG00000268895
Method RIP-seq logFC: 1.42E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
A2M antisense RNA 1 (A2M-AS1) [1]
HGNC ID HGNC:27057
Ensembl ID ENSG00000245105
Method RIP-seq logFC: 1.06E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ABHD15 antisense RNA 1 (ABHD15-AS1) [1]
HGNC ID HGNC:49685
Ensembl ID ENSG00000264031
Method RIP-seq logFC: 2.69E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ACTN1 divergent transcript (ACTN1-AS1) [1]
HGNC ID HGNC:20131
Ensembl ID ENSG00000259062
Method RIP-seq logFC: 1.26E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ADAMTSL4 antisense RNA 1 (ADAMTSL4-AS1) [1]
HGNC ID HGNC:32041
Ensembl ID ENSG00000203804
Uniprot ID A4AS1_HUMAN
Method RIP-seq logFC: 1.56E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ADARB2 antisense RNA 1 (ADARB2-AS1) [1]
HGNC ID HGNC:23299
Ensembl ID ENSG00000205696
Uniprot ID ADAS1_HUMAN
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ADIRF antisense RNA 1 (ADIRF-AS1) [1]
HGNC ID HGNC:45127
Ensembl ID ENSG00000272734
Method RIP-seq logFC: 1.76E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ADPGK antisense RNA 1 (ADPGK-AS1) [1]
HGNC ID HGNC:44144
Ensembl ID ENSG00000260898
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
AFAP1 antisense RNA 1 (AFAP1-AS1) [1]
HGNC ID HGNC:28141
Ensembl ID ENSG00000272620
Method RIP-seq logFC: 1.75E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
AFTPH divergent transcript (RP11-568N6.1) [1]
HGNC ID HGNC:52788
Ensembl ID ENSG00000260101
Method RIP-seq logFC: 2.19E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Short non-coding
Micro RNA
In total 70 target gene(s)
MicroRNA 101-2 (MIR101-2) [2]
HGNC ID HGNC:31489
Ensembl ID ENSG00000199065
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103a-1 (MIR103A1) [2]
HGNC ID HGNC:31490
Ensembl ID ENSG00000199035
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 106b (MIR106B) [2]
HGNC ID HGNC:31495
Ensembl ID ENSG00000208036
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 1226 (MIR1226) [2]
HGNC ID HGNC:33922
Ensembl ID ENSG00000221585
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 124-3 (MIR124-3) [2]
HGNC ID HGNC:31504
Ensembl ID ENSG00000207598
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 1249 (MIR1249) [2]
HGNC ID HGNC:35315
Ensembl ID ENSG00000221598
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 125b-2 (MIR125B2) [2]
HGNC ID HGNC:31507
Ensembl ID ENSG00000207863
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 1262 (MIR1262) [2]
HGNC ID HGNC:35328
Ensembl ID ENSG00000221203
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 1587 (MIR1587) [2]
HGNC ID HGNC:41596
Ensembl ID ENSG00000263972
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
microRNA 1914 (MIR1914) [2]
HGNC ID HGNC:35398
Ensembl ID ENSG00000284433
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Misc RNA
In total 3 target gene(s)
Ribonuclease P RNA component H1 (RPPH1) [1]
HGNC ID HGNC:19273
Ensembl ID ENSG00000277209
Method RIP-seq logFC: 7.64E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Telomerase RNA component (TERC) [1]
HGNC ID HGNC:11727
Ensembl ID ENSG00000270141
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA component of mitochondrial RNA processing endoribonuclease (RMRP) [2]
HGNC ID HGNC:10031
Ensembl ID ENSG00000277027
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Ribosomal RNA
In total 22 target gene(s)
Mitochondrially encoded 12S rRNA (MT-RNR1) [1]
HGNC ID HGNC:7470
Ensembl ID ENSG00000211459
Uniprot ID MOTSC_HUMAN
Method RIP-seq logFC: 3.07E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 1 (RNA5S1) [1]
HGNC ID HGNC:34362
Ensembl ID ENSG00000199352
Method RIP-seq logFC: 2.08E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 10 (RNA5S10) [1]
HGNC ID HGNC:34371
Ensembl ID ENSG00000199910
Method RIP-seq logFC: 2.08E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 11 (RNA5S11) [1]
HGNC ID HGNC:34372
Ensembl ID ENSG00000199334
Method RIP-seq logFC: 2.08E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 12 (RNA5S12) [1]
HGNC ID HGNC:34373
Ensembl ID ENSG00000199270
Method RIP-seq logFC: 2.08E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 13 (RNA5S13) [1]
HGNC ID HGNC:34374
Ensembl ID ENSG00000202526
Method RIP-seq logFC: 2.08E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 14 (RNA5S14) [1]
HGNC ID HGNC:34375
Ensembl ID ENSG00000201355
Method RIP-seq logFC: 2.08E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 15 (RNA5S15) [1]
HGNC ID HGNC:34376
Ensembl ID ENSG00000201925
Method RIP-seq logFC: 2.08E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 16 (RNA5S16) [1]
HGNC ID HGNC:34377
Ensembl ID ENSG00000202257
Method RIP-seq logFC: 2.08E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 17 (RNA5S17) [1]
HGNC ID HGNC:34378
Ensembl ID ENSG00000200370
Method RIP-seq logFC: 2.08E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Small nuclear RNA
In total 35 target gene(s)
RNA, U1 small nuclear 1 (RNU1-1) [1]
HGNC ID HGNC:10120
Ensembl ID ENSG00000206652
Method RIP-seq logFC: 8.44E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U1 small nuclear 2 (RNU1-2) [1]
HGNC ID HGNC:10123
Ensembl ID ENSG00000207005
Method RIP-seq logFC: 8.44E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U1 small nuclear 3 (RNU1-3) [1]
HGNC ID HGNC:10130
Ensembl ID ENSG00000207513
Method RIP-seq logFC: 8.44E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U1 small nuclear 4 (RNU1-4) [1]
HGNC ID HGNC:10128
Ensembl ID ENSG00000207389
Method RIP-seq logFC: 8.44E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U12 small nuclear (RNU12) [1]
HGNC ID HGNC:19380
Ensembl ID ENSG00000276027
Method RIP-seq logFC: 9.06E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U2 small nuclear 1 (RNU2-1) [1]
HGNC ID HGNC:10142
Ensembl ID ENSG00000274585
Method RIP-seq logFC: 9.84E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U4 small nuclear 1 (RNU4-1) [1]
HGNC ID HGNC:10192
Ensembl ID ENSG00000200795
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U4 small nuclear 2 (RNU4-2) [1]
HGNC ID HGNC:10193
Ensembl ID ENSG00000202538
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U4atac small nuclear (RNU4ATAC) [1]
HGNC ID HGNC:34016
Ensembl ID ENSG00000264229
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U5A small nuclear 1 (RNU5A-1) [1]
HGNC ID HGNC:10211
Ensembl ID ENSG00000199568
Method RIP-seq logFC: 7.86E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Small nucleolar RNA
In total 140 target gene(s)
Small Cajal body-specific RNA 1 (SCARNA1) [1]
HGNC ID HGNC:32555
Ensembl ID ENSG00000252947
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 10 (SCARNA10) [1]
HGNC ID HGNC:32567
Ensembl ID ENSG00000239002
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 13 (SCARNA13) [1]
HGNC ID HGNC:32570
Ensembl ID ENSG00000252481
Method RIP-seq logFC: 5.30E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 14 (SCARNA14) [1]
HGNC ID HGNC:32571
Ensembl ID ENSG00000252712
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 16 (SCARNA16) [1]
HGNC ID HGNC:32573
Ensembl ID ENSG00000275143
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 18 (SCARNA18) [1]
HGNC ID HGNC:32559
Ensembl ID ENSG00000238835
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 2 (SCARNA2) [1]
HGNC ID HGNC:32558
Ensembl ID ENSG00000278249
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 20 (SCARNA20) [1]
HGNC ID HGNC:32578
Ensembl ID ENSG00000252577
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 21 (SCARNA21) [1]
HGNC ID HGNC:32579
Ensembl ID ENSG00000252835
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 22 (SCARNA22) [1]
HGNC ID HGNC:32580
Ensembl ID ENSG00000249784
Method RIP-seq logFC: 3.14E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Vault RNA
In total 3 target gene(s)
Vault RNA 1-1 (VTRNA1-1) [1]
HGNC ID HGNC:12654
Ensembl ID ENSG00000199990
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Vault RNA 1-2 (VTRNA1-2) [2]
HGNC ID HGNC:12655
Ensembl ID ENSG00000202111
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Vault RNA 1-3 (VTRNA1-3) [2]
HGNC ID HGNC:12656
Ensembl ID ENSG00000202515
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Y RNA
In total 4 target gene(s)
RNA, Ro60-associated Y1 (RNY1) [1]
HGNC ID HGNC:10242
Ensembl ID ENSG00000201098
Method RIP-seq logFC: 6.66E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, Ro60-associated Y3 (RNY3) [1]
HGNC ID HGNC:10243
Ensembl ID ENSG00000202354
Method RIP-seq logFC: 6.95E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, Ro60-associated Y4 (RNY4) [1]
HGNC ID HGNC:10244
Ensembl ID ENSG00000252316
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, Ro60-associated Y5 (RNY5) [2]
HGNC ID HGNC:10248
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Other
Complex locus constituent
In total 1 target gene(s)
Protocadherin alpha subfamily C, 1 (PCDHAC1) [1]
HGNC ID HGNC:8676
Ensembl ID ENSG00000248383
Uniprot ID PCDC1_HUMAN
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Protocadherin
In total 30 target gene(s)
Protocadherin beta 10 (PCDHB10) [1]
HGNC ID HGNC:8681
Ensembl ID ENSG00000120324
Uniprot ID PCDBA_HUMAN
Method RIP-seq logFC: 5.42E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 11 (PCDHB11) [1]
HGNC ID HGNC:8682
Ensembl ID ENSG00000197479
Uniprot ID PCDBB_HUMAN
Method RIP-seq logFC: 3.29E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 12 (PCDHB12) [1]
HGNC ID HGNC:8683
Ensembl ID ENSG00000120328
Uniprot ID PCDBC_HUMAN
Method RIP-seq logFC: 2.35E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 13 (PCDHB13) [1]
HGNC ID HGNC:8684
Ensembl ID ENSG00000187372
Uniprot ID PCDBD_HUMAN
Method RIP-seq logFC: 3.19E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 14 (PCDHB14) [1]
HGNC ID HGNC:8685
Ensembl ID ENSG00000120327
Uniprot ID PCDBE_HUMAN
Method RIP-seq logFC: 3.54E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 15 (PCDHB15) [1]
HGNC ID HGNC:8686
Ensembl ID ENSG00000113248
Uniprot ID PCDBF_HUMAN
Method RIP-seq logFC: 4.12E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 16 (PCDHB16) [1]
HGNC ID HGNC:14546
Ensembl ID ENSG00000272674
Uniprot ID PCDBG_HUMAN
Method RIP-seq logFC: 3.88E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 2 (PCDHB2) [1]
HGNC ID HGNC:8687
Ensembl ID ENSG00000112852
Uniprot ID PCDB2_HUMAN
Method RIP-seq logFC: 2.56E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 3 (PCDHB3) [1]
HGNC ID HGNC:8688
Ensembl ID ENSG00000113205
Uniprot ID PCDB3_HUMAN
Method RIP-seq logFC: 1.35E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 5 (PCDHB5) [1]
HGNC ID HGNC:8690
Ensembl ID ENSG00000113209
Uniprot ID PCDB5_HUMAN
Method RIP-seq logFC: 2.54E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Readthrough
In total 37 target gene(s)
ANKHD1-EIF4EBP3 readthrough (ANKHD1-EIF4EBP3) [1]
HGNC ID HGNC:33530
Ensembl ID ENSG00000254996
Method RIP-seq logFC: 1.41E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ARHGAP19-SLIT1 readthrough (NMD candidate) (ARHGAP19-SLIT1) [1]
HGNC ID HGNC:48348
Ensembl ID ENSG00000269891
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ARL2-SNX15 readthrough (NMD candidate) (ARL2-SNX15) [1]
HGNC ID HGNC:49197
Ensembl ID ENSG00000273003
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ATP5MF-PTCD1 readthrough (ATP5J2-PTCD1) [1]
HGNC ID HGNC:38844
Ensembl ID ENSG00000248919
Method RIP-seq logFC: 1.64E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ATP6V1G2-DDX39B readthrough (NMD candidate) (ATP6V1G2-DDX39B) [1]
HGNC ID HGNC:41999
Ensembl ID ENSG00000254870
Method RIP-seq logFC: 2.58E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
BIVM-ERCC5 readthrough (BIVM-ERCC5) [1]
HGNC ID HGNC:43690
Ensembl ID ENSG00000270181
Method RIP-seq logFC: 2.41E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
BLOC1S5-TXNDC5 readthrough (NMD candidate) (BLOC1S5-TXNDC5) [1]
HGNC ID HGNC:42001
Ensembl ID ENSG00000259040
Method RIP-seq logFC: 1.11E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
C8orf44-SGK3 readthrough (C8orf44-SGK3) [1]
HGNC ID HGNC:48354
Ensembl ID ENSG00000288602
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
CCDC169-SOHLH2 readthrough (CCDC169-SOHLH2) [1]
HGNC ID HGNC:38866
Ensembl ID ENSG00000250709
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
CKLF-CMTM1 readthrough (CKLF-CMTM1) [1]
HGNC ID HGNC:39977
Ensembl ID ENSG00000254788
Method RIP-seq logFC: 2.03E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
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T cell receptor gene
In total 1 target gene(s)
T cell receptor gamma variable 9 (TRGV9) [1]
HGNC ID HGNC:12295
Ensembl ID ENSG00000211695
Uniprot ID TRGV9_HUMAN
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Unknown
In total 3 target gene(s)
Chromosome 1 putative open reading frame 220 (C1orf220) [1]
HGNC ID HGNC:33805
Ensembl ID ENSG00000213057
Uniprot ID CA220_HUMAN
Method RIP-seq logFC: 2.60E+00 GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
elongin A3, pseudogene (TCEB3C) [1]
HGNC ID HGNC:24617
Ensembl ID ENSG00000288631
Method RIP-seq logFC: Inf GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Chromosome 5 putative open reading frame 64 (C5orf64) [2]
HGNC ID HGNC:26744
Ensembl ID ENSG00000178722
Uniprot ID CE064_HUMAN
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
References
Ref 1 YTHDF3 facilitates translation and decay of N(6)-methyladenosine-modified RNA. Cell Res. 2017 Mar;27(3):315-328. doi: 10.1038/cr.2017.15. Epub 2017 Jan 20.
Ref 2 m(6)A RNA methylation promotes XIST-mediated transcriptional repression. Nature. 2016 Sep 15;537(7620):369-373. doi: 10.1038/nature19342. Epub 2016 Sep 7.