m6A Target Genes of This Regulator

General Information of the m6A Regulator (ID: REG00024)
Regulator Name YTH domain-containing family protein 1 (YTHDF1)
Synonyms
DF1; Dermatomyositis associated with cancer putative autoantigen 1; DACA-1; C20orf21
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Gene Name YTHDF1
Regulator Type ERASER READER WRITER
Regulator Link Click to View Full Information of This Regulator
Full List of Target Gene(s) of This m6A Regulator ( Full Data Download )
Protein coding
Gene with protein product
In total 11280 target gene(s)
1-acylglycerol-3-phosphate O-acyltransferase 3 (AGPAT3) [1]
HGNC ID HGNC:326
Ensembl ID ENSG00000160216
Uniprot ID PLCC_HUMAN
Method RIP-seq logFC: 1.43E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
1-acylglycerol-3-phosphate O-acyltransferase 5 (AGPAT5) [1]
HGNC ID HGNC:20886
Ensembl ID ENSG00000155189
Uniprot ID PLCE_HUMAN
Method RIP-seq logFC: 1.23E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
2',3'-cyclic nucleotide 3' phosphodiesterase (CNP) [1]
HGNC ID HGNC:2158
Ensembl ID ENSG00000173786
Uniprot ID CN37_HUMAN
Method RIP-seq logFC: 1.15E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
2'-5'-oligoadenylate synthetase 3 (OAS3) [1]
HGNC ID HGNC:8088
Ensembl ID ENSG00000111331
Uniprot ID OAS3_HUMAN
Method RIP-seq logFC: 1.74E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
2-aminoethanethiol dioxygenase (ADO) [1]
HGNC ID HGNC:23506
Ensembl ID ENSG00000181915
Uniprot ID AEDO_HUMAN
Method RIP-seq logFC: 1.02E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
3'(2'), 5'-bisphosphate nucleotidase 2 (IMPAD1) [1]
HGNC ID HGNC:26019
Ensembl ID ENSG00000104331
Uniprot ID IMPA3_HUMAN
Method RIP-seq logFC: 1.11E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
3-hydroxy-3-methylglutaryl-CoA reductase (HMGCR) [1]
HGNC ID HGNC:5006
Ensembl ID ENSG00000113161
Uniprot ID HMDH_HUMAN
Method RIP-seq logFC: 1.46E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
3-hydroxy-3-methylglutaryl-CoA synthase 1 (HMGCS1) [1]
HGNC ID HGNC:5007
Ensembl ID ENSG00000112972
Uniprot ID HMCS1_HUMAN
Method RIP-seq logFC: 1.33E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
3-oxoacid CoA-transferase 2 (OXCT2) [1]
HGNC ID HGNC:18606
Ensembl ID ENSG00000198754
Uniprot ID SCOT2_HUMAN
Method RIP-seq logFC: 1.51E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
3-oxoacyl-ACP synthase, mitochondrial (OXSM) [1]
HGNC ID HGNC:26063
Ensembl ID ENSG00000151093
Uniprot ID OXSM_HUMAN
Method RIP-seq logFC: 1.06E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Pseudogene
Pseudogene
In total 582 target gene(s)
3-oxoacid CoA-transferase 2 pseudogene 1 (OXCT2P1) [1]
HGNC ID HGNC:21627
Ensembl ID ENSG00000237624
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
3-phosphoinositide dependent protein kinase 2, pseudogene (PDPK2P) [1]
HGNC ID HGNC:49897
Ensembl ID ENSG00000205918
Uniprot ID PDPK2_HUMAN
Method RIP-seq logFC: 2.96E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
5-hydroxytryptamine receptor 7 pseudogene 1 (HTR7P1) [1]
HGNC ID HGNC:30411
Ensembl ID ENSG00000183935
Method RIP-seq logFC: 2.64E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Actin gamma 1 pseudogene 10 (ACTG1P10) [1]
HGNC ID HGNC:155
Ensembl ID ENSG00000231340
Method RIP-seq logFC: 4.44E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Actin gamma 1 pseudogene 20 (ACTG1P20) [1]
HGNC ID HGNC:51500
Ensembl ID ENSG00000241547
Method RIP-seq logFC: 1.03E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ADAM metallopeptidase domain 21 pseudogene 1 (ADAM21P1) [1]
HGNC ID HGNC:19822
Ensembl ID ENSG00000235812
Method RIP-seq logFC: 1.55E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ADCY10 pseudogene 1 (ADCY10P1) [1]
HGNC ID HGNC:44143
Ensembl ID ENSG00000161912
Method RIP-seq logFC: 3.46E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Adenosylhomocysteinase pseudogene 2 (AHCYP2) [1]
HGNC ID HGNC:44994
Ensembl ID ENSG00000238181
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Adenosylmethionine decarboxylase 1 pseudogene 3 (AMD1P3) [1]
HGNC ID HGNC:51608
Ensembl ID ENSG00000249286
Method RIP-seq logFC: 1.30E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Adenylate kinase 3 pseudogene 3 (AK3P3) [1]
HGNC ID HGNC:39062
Ensembl ID ENSG00000230042
Method RIP-seq logFC: 2.34E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Long non-coding
Long non-coding RNA
In total 1068 target gene(s)
ABHD15 antisense RNA 1 (ABHD15-AS1) [1]
HGNC ID HGNC:49685
Ensembl ID ENSG00000264031
Method RIP-seq logFC: 2.22E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ACAP2 intronic transcript 1 (ACAP2-IT1) [1]
HGNC ID HGNC:41426
Ensembl ID ENSG00000229325
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ACTA2 antisense RNA 1 (ACTA2-AS1) [1]
HGNC ID HGNC:45169
Ensembl ID ENSG00000180139
Method RIP-seq logFC: 1.17E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ADGRL1 antisense RNA 1 (CTB-55O6.12) [1]
HGNC ID HGNC:55309
Ensembl ID ENSG00000267169
Method RIP-seq logFC: 1.41E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
AFAP1 antisense RNA 1 (AFAP1-AS1) [1]
HGNC ID HGNC:28141
Ensembl ID ENSG00000272620
Method RIP-seq logFC: 1.22E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
AFTPH divergent transcript (RP11-568N6.1) [1]
HGNC ID HGNC:52788
Ensembl ID ENSG00000260101
Method RIP-seq logFC: 1.46E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
AGAP2 antisense RNA 1 (AGAP2-AS1) [1]
HGNC ID HGNC:48633
Ensembl ID ENSG00000255737
Method RIP-seq logFC: 1.02E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
AHI1 divergent transcript (LINC00271) [1]
HGNC ID HGNC:32526
Ensembl ID ENSG00000231028
Uniprot ID CF217_HUMAN
Method RIP-seq logFC: 1.09E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ALMS1 intronic transcript 1 (ALMS1-IT1) [1]
HGNC ID HGNC:41305
Ensembl ID ENSG00000230002
Method RIP-seq logFC: 1.82E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Androgen receptor regulated long noncoding RNA 1 (PRCAT47) [1]
HGNC ID HGNC:53032
Ensembl ID ENSG00000260896
Method RIP-seq logFC: 1.24E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Short non-coding
Micro RNA
In total 537 target gene(s)
MicroRNA 101-2 (MIR101-2) [2]
HGNC ID HGNC:31489
Ensembl ID ENSG00000199065
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103a-1 (MIR103A1) [2]
HGNC ID HGNC:31490
Ensembl ID ENSG00000199035
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103a-2 (MIR103A2) [2]
HGNC ID HGNC:31491
Ensembl ID ENSG00000199024
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103b-1 (MIR103B1) [2]
HGNC ID HGNC:35384
Ensembl ID ENSG00000283612
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 106b (MIR106B) [2]
HGNC ID HGNC:31495
Ensembl ID ENSG00000208036
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 107 (MIR107) [2]
HGNC ID HGNC:31496
Ensembl ID ENSG00000198997
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 1180 (MIR1180) [2]
HGNC ID HGNC:35261
Ensembl ID ENSG00000221540
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
microRNA 1181 (MIR1181) [2]
HGNC ID HGNC:35262
Ensembl ID ENSG00000284268
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
microRNA 1182 (MIR1182) [2]
HGNC ID HGNC:35263
Ensembl ID ENSG00000283799
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 1225 (MIR1225) [2]
HGNC ID HGNC:33931
Ensembl ID ENSG00000221656
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Misc RNA
In total 5 target gene(s)
Ribonuclease P RNA component H1 (RPPH1) [1]
HGNC ID HGNC:19273
Ensembl ID ENSG00000277209
Method RIP-seq logFC: 6.03E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA component of mitochondrial RNA processing endoribonuclease (RMRP) [1]
HGNC ID HGNC:10031
Ensembl ID ENSG00000277027
Method RIP-seq logFC: 6.07E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Telomerase RNA component (TERC) [1]
HGNC ID HGNC:11727
Ensembl ID ENSG00000270141
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small NF90 (ILF3) associated RNA E (SNAR-E) [2]
HGNC ID HGNC:34325
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small NF90 (ILF3) associated RNA I (SNAR-I) [2]
HGNC ID HGNC:34330
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Ribosomal RNA
In total 21 target gene(s)
RNA, 5S ribosomal 1 (RNA5S1) [1]
HGNC ID HGNC:34362
Ensembl ID ENSG00000199352
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 10 (RNA5S10) [1]
HGNC ID HGNC:34371
Ensembl ID ENSG00000199910
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 11 (RNA5S11) [1]
HGNC ID HGNC:34372
Ensembl ID ENSG00000199334
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 12 (RNA5S12) [1]
HGNC ID HGNC:34373
Ensembl ID ENSG00000199270
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 13 (RNA5S13) [1]
HGNC ID HGNC:34374
Ensembl ID ENSG00000202526
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 14 (RNA5S14) [1]
HGNC ID HGNC:34375
Ensembl ID ENSG00000201355
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 15 (RNA5S15) [1]
HGNC ID HGNC:34376
Ensembl ID ENSG00000201925
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 16 (RNA5S16) [1]
HGNC ID HGNC:34377
Ensembl ID ENSG00000202257
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 17 (RNA5S17) [1]
HGNC ID HGNC:34378
Ensembl ID ENSG00000200370
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, 5S ribosomal 2 (RNA5S2) [1]
HGNC ID HGNC:34363
Ensembl ID ENSG00000201588
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Small nuclear RNA
In total 32 target gene(s)
RNA, U1 small nuclear 1 (RNU1-1) [1]
HGNC ID HGNC:10120
Ensembl ID ENSG00000206652
Method RIP-seq logFC: 8.82E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U1 small nuclear 2 (RNU1-2) [1]
HGNC ID HGNC:10123
Ensembl ID ENSG00000207005
Method RIP-seq logFC: 8.82E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U1 small nuclear 3 (RNU1-3) [1]
HGNC ID HGNC:10130
Ensembl ID ENSG00000207513
Method RIP-seq logFC: 8.82E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U1 small nuclear 4 (RNU1-4) [1]
HGNC ID HGNC:10128
Ensembl ID ENSG00000207389
Method RIP-seq logFC: 8.82E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U12 small nuclear (RNU12) [1]
HGNC ID HGNC:19380
Ensembl ID ENSG00000276027
Method RIP-seq logFC: 6.33E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U2 small nuclear 1 (RNU2-1) [1]
HGNC ID HGNC:10142
Ensembl ID ENSG00000274585
Method RIP-seq logFC: 6.40E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U4 small nuclear 1 (RNU4-1) [1]
HGNC ID HGNC:10192
Ensembl ID ENSG00000200795
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U4 small nuclear 2 (RNU4-2) [1]
HGNC ID HGNC:10193
Ensembl ID ENSG00000202538
Method RIP-seq logFC: 8.23E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U4atac small nuclear (RNU4ATAC) [1]
HGNC ID HGNC:34016
Ensembl ID ENSG00000264229
Method RIP-seq logFC: 1.54E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, U5A small nuclear 1 (RNU5A-1) [1]
HGNC ID HGNC:10211
Ensembl ID ENSG00000199568
Method RIP-seq logFC: 7.54E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Small nucleolar RNA
In total 282 target gene(s)
Small Cajal body-specific RNA 1 (SCARNA1) [1]
HGNC ID HGNC:32555
Ensembl ID ENSG00000252947
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 10 (SCARNA10) [1]
HGNC ID HGNC:32567
Ensembl ID ENSG00000239002
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 13 (SCARNA13) [1]
HGNC ID HGNC:32570
Ensembl ID ENSG00000252481
Method RIP-seq logFC: 3.72E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 14 (SCARNA14) [1]
HGNC ID HGNC:32571
Ensembl ID ENSG00000252712
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 16 (SCARNA16) [1]
HGNC ID HGNC:32573
Ensembl ID ENSG00000275143
Method RIP-seq logFC: 6.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 18 (SCARNA18) [1]
HGNC ID HGNC:32559
Ensembl ID ENSG00000238835
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 20 (SCARNA20) [1]
HGNC ID HGNC:32578
Ensembl ID ENSG00000252577
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 21 (SCARNA21) [1]
HGNC ID HGNC:32579
Ensembl ID ENSG00000252835
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 22 (SCARNA22) [1]
HGNC ID HGNC:32580
Ensembl ID ENSG00000249784
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Small Cajal body-specific RNA 23 (SCARNA23) [1]
HGNC ID HGNC:32581
Ensembl ID ENSG00000251869
Method RIP-seq logFC: 2.12E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Transfer RNA
In total 4 target gene(s)
Mitochondrially encoded tRNA-Ala (GCN) (MT-TA) [4]
HGNC ID HGNC:7475
Ensembl ID ENSG00000210127
Method RNA-seq GSE159425
Condition knock down
Evidence logFC: 1.343750319; p-value: 0.01085766
Cell Line Gastric adenocarcinoma AGS cell line Homo sapiens CVCL_0139
Mitochondrially encoded tRNA-His (CAU/C) (MT-TH) [4]
HGNC ID HGNC:7487
Ensembl ID ENSG00000210176
Method RNA-seq GSE159425
Condition knock down
Evidence logFC: -0.759646992; p-value: 0.023321584
Cell Line Gastric adenocarcinoma AGS cell line Homo sapiens CVCL_0139
Mitochondrially encoded tRNA-Leu (UUA/G) 1 (MT-TL1) [4]
HGNC ID HGNC:7490
Ensembl ID ENSG00000209082
Method RNA-seq GSE159425
Condition knock down
Evidence logFC: -1.146645241; p-value: 0.048486762
Cell Line Gastric adenocarcinoma AGS cell line Homo sapiens CVCL_0139
Mitochondrially encoded tRNA-Ser (UCN) 1 (MT-TS1) [4]
HGNC ID HGNC:7497
Ensembl ID ENSG00000210151
Method RNA-seq GSE159425
Condition knock down
Evidence logFC: 2.603880867; p-value: 0.005029885
Cell Line Gastric adenocarcinoma AGS cell line Homo sapiens CVCL_0139
Click to Download All Target Gene of This Genetic Class
Vault RNA
In total 4 target gene(s)
Vault RNA 1-1 (VTRNA1-1) [1]
HGNC ID HGNC:12654
Ensembl ID ENSG00000199990
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Vault RNA 1-2 (VTRNA1-2) [2]
HGNC ID HGNC:12655
Ensembl ID ENSG00000202111
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Vault RNA 1-3 (VTRNA1-3) [2]
HGNC ID HGNC:12656
Ensembl ID ENSG00000202515
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Vault RNA 2-1 (VTRNA2-1) [1]
HGNC ID HGNC:37054
Ensembl ID ENSG00000270123
Method PARCLIP-seq GSE63591; GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Y RNA
In total 4 target gene(s)
RNA, Ro60-associated Y1 (RNY1) [1]
HGNC ID HGNC:10242
Ensembl ID ENSG00000201098
Method RIP-seq logFC: 6.27E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, Ro60-associated Y3 (RNY3) [1]
HGNC ID HGNC:10243
Ensembl ID ENSG00000202354
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
RNA, Ro60-associated Y4 (RNY4) [2]
HGNC ID HGNC:10244
Ensembl ID ENSG00000252316
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, Ro60-associated Y5 (RNY5) [2]
HGNC ID HGNC:10248
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Other
Complex locus constituent
In total 1 target gene(s)
Protocadherin alpha 1 (PCDHA1) [1]
HGNC ID HGNC:8663
Ensembl ID ENSG00000204970
Uniprot ID PCDA1_HUMAN
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Endogenous retrovirus
In total 1 target gene(s)
Endogenous retrovirus group K3 member 1 (ERVK3-1) [2]
HGNC ID HGNC:30466
Ensembl ID ENSG00000142396
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Protocadherin
In total 27 target gene(s)
Protocadherin beta 10 (PCDHB10) [1]
HGNC ID HGNC:8681
Ensembl ID ENSG00000120324
Uniprot ID PCDBA_HUMAN
Method RIP-seq logFC: 1.05E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 11 (PCDHB11) [1]
HGNC ID HGNC:8682
Ensembl ID ENSG00000197479
Uniprot ID PCDBB_HUMAN
Method RIP-seq logFC: 2.48E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 12 (PCDHB12) [1]
HGNC ID HGNC:8683
Ensembl ID ENSG00000120328
Uniprot ID PCDBC_HUMAN
Method RIP-seq logFC: 1.35E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 13 (PCDHB13) [1]
HGNC ID HGNC:8684
Ensembl ID ENSG00000187372
Uniprot ID PCDBD_HUMAN
Method RIP-seq logFC: 2.24E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 14 (PCDHB14) [1]
HGNC ID HGNC:8685
Ensembl ID ENSG00000120327
Uniprot ID PCDBE_HUMAN
Method RIP-seq logFC: 1.95E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 15 (PCDHB15) [1]
HGNC ID HGNC:8686
Ensembl ID ENSG00000113248
Uniprot ID PCDBF_HUMAN
Method RIP-seq logFC: 1.60E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 2 (PCDHB2) [1]
HGNC ID HGNC:8687
Ensembl ID ENSG00000112852
Uniprot ID PCDB2_HUMAN
Method RIP-seq logFC: 3.64E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 3 (PCDHB3) [1]
HGNC ID HGNC:8688
Ensembl ID ENSG00000113205
Uniprot ID PCDB3_HUMAN
Method RIP-seq logFC: 1.58E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 5 (PCDHB5) [1]
HGNC ID HGNC:8690
Ensembl ID ENSG00000113209
Uniprot ID PCDB5_HUMAN
Method RIP-seq logFC: 1.12E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Protocadherin beta 7 (PCDHB7) [1]
HGNC ID HGNC:8692
Ensembl ID ENSG00000113212
Uniprot ID PCDB7_HUMAN
Method RIP-seq logFC: 2.00E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Readthrough
In total 47 target gene(s)
ARHGAP19-SLIT1 readthrough (NMD candidate) (ARHGAP19-SLIT1) [1]
HGNC ID HGNC:48348
Ensembl ID ENSG00000269891
Method RIP-seq logFC: 5.19E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ARL2-SNX15 readthrough (NMD candidate) (ARL2-SNX15) [1]
HGNC ID HGNC:49197
Ensembl ID ENSG00000273003
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ATP5MF-PTCD1 readthrough (ATP5J2-PTCD1) [1]
HGNC ID HGNC:38844
Ensembl ID ENSG00000248919
Method RIP-seq logFC: 1.77E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
ATP6V1G2-DDX39B readthrough (NMD candidate) (ATP6V1G2-DDX39B) [1]
HGNC ID HGNC:41999
Ensembl ID ENSG00000254870
Method RIP-seq logFC: 2.41E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
BIVM-ERCC5 readthrough (BIVM-ERCC5) [1]
HGNC ID HGNC:43690
Ensembl ID ENSG00000270181
Method RIP-seq logFC: 1.40E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
BLOC1S5-TXNDC5 readthrough (NMD candidate) (BLOC1S5-TXNDC5) [1]
HGNC ID HGNC:42001
Ensembl ID ENSG00000259040
Method RIP-seq logFC: 3.04E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
CCDC169-SOHLH2 readthrough (CCDC169-SOHLH2) [1]
HGNC ID HGNC:38866
Ensembl ID ENSG00000250709
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
CHURC1-FNTB readthrough (CHURC1-FNTB) [1]
HGNC ID HGNC:42960
Ensembl ID ENSG00000125954
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
CKLF-CMTM1 readthrough (CKLF-CMTM1) [1]
HGNC ID HGNC:39977
Ensembl ID ENSG00000254788
Method RIP-seq logFC: 1.17E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
GCOM1, MYZAP-POLR2M combined locus (GCOM1) [1]
HGNC ID HGNC:26424
Ensembl ID ENSG00000137878
Method RIP-seq logFC: 1.65E+00 GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Unknown
In total 9 target gene(s)
elongin A3, pseudogene (TCEB3C) [1]
HGNC ID HGNC:24617
Ensembl ID ENSG00000288631
Method RIP-seq logFC: Inf GSE63591
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Acidic nuclear phosphoprotein 32 family member C (ANP32C) [2]
HGNC ID HGNC:16675
Ensembl ID ENSG00000248546
Uniprot ID AN32C_HUMAN
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Chromosome 5 putative open reading frame 64 (C5orf64) [2]
HGNC ID HGNC:26744
Ensembl ID ENSG00000178722
Uniprot ID CE064_HUMAN
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Ribosomal protein SA pseudogene 58 (RPSAP58) [2]
HGNC ID HGNC:36809
Ensembl ID ENSG00000225178
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Surfactant associated 3 (SFTA3) [2]
HGNC ID HGNC:18387
Ensembl ID ENSG00000229415
Uniprot ID SFTA3_HUMAN
Method iCLIP-seq GSE78030
Cell Line HEK293T Normal Homo sapiens CVCL_0063
XK related, Y-linked (XKRY) [1]
HGNC ID HGNC:18571
Ensembl ID ENSG00000250868
Uniprot ID XKRY_HUMAN
Method PARCLIP-seq GSE63591; GSE86214
Cell Line Hela Cervical cancer Homo sapiens CVCL_0030
Chromosome 19 putative open reading frame 48 (C19orf48) [4]
HGNC ID HGNC:29667
Ensembl ID ENSG00000167747
Uniprot ID CS048_HUMAN
Method RNA-seq GSE159425
Condition knock down
Evidence logFC: 0.784497127; p-value: 0.045461457
Cell Line Gastric adenocarcinoma AGS cell line Homo sapiens CVCL_0139
Chromosome 22 putative open reading frame 46 (C22orf46) [4]
HGNC ID HGNC:26294
Ensembl ID ENSG00000184208
Uniprot ID CV046_HUMAN
Method RNA-seq GSE159425
Condition knock down
Evidence logFC: -1.347059326; p-value: 0.001884625
Cell Line Gastric adenocarcinoma AGS cell line Homo sapiens CVCL_0139
Proapoptotic nucleolar protein 1 (PANO1) [4]
HGNC ID HGNC:51237
Ensembl ID ENSG00000288675
Uniprot ID PANO1_HUMAN
Method RNA-seq GSE159425
Condition knock down
Evidence logFC: -0.912001972; p-value: 0.001971587
Cell Line Gastric adenocarcinoma AGS cell line Homo sapiens CVCL_0139
Click to Download All Target Gene of This Genetic Class
References
Ref 1 N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency. Cell. 2015 Jun 4;161(6):1388-99. doi: 10.1016/j.cell.2015.05.014.
Ref 2 m(6)A RNA methylation promotes XIST-mediated transcriptional repression. Nature. 2016 Sep 15;537(7620):369-373. doi: 10.1038/nature19342. Epub 2016 Sep 7.
Ref 3 The m(6)A Reader YTHDF1 Facilitates the Tumorigenesis and Metastasis of Gastric Cancer via USP14 Translation in an m(6)A-Dependent Manner. Front Cell Dev Biol. 2021 Mar 15;9:647702. doi: 10.3389/fcell.2021.647702. eCollection 2021.
Ref 4 N6-Methyladenosine Reader YTHDF1 Promotes ARHGEF2 Translation and RhoA Signaling in Colorectal Cancer. Gastroenterology. 2022 Apr;162(4):1183-1196. doi: 10.1053/j.gastro.2021.12.269. Epub 2021 Dec 28.