m6A Target Genes of This Regulator

General Information of the m6A Regulator (ID: REG00022)
Regulator Name YTH domain-containing protein 1 (YTHDC1)
Synonyms
Splicing factor YT521; YT521-B; KIAA1966; YT521
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Gene Name YTHDC1
Regulator Type ERASER READER WRITER
Regulator Link Click to View Full Information of This Regulator
Full List of Target Gene(s) of This m6A Regulator ( Full Data Download )
Protein coding
Gene with protein product
In total 9751 target gene(s)
1,4-alpha-glucan branching enzyme 1 (GBE1) [1]
HGNC ID HGNC:4180
Ensembl ID ENSG00000114480
Uniprot ID GLGB_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
1-acylglycerol-3-phosphate O-acyltransferase 3 (AGPAT3) [1]
HGNC ID HGNC:326
Ensembl ID ENSG00000160216
Uniprot ID PLCC_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
1-acylglycerol-3-phosphate O-acyltransferase 5 (AGPAT5) [1]
HGNC ID HGNC:20886
Ensembl ID ENSG00000155189
Uniprot ID PLCE_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
2',3'-cyclic nucleotide 3' phosphodiesterase (CNP) [1]
HGNC ID HGNC:2158
Ensembl ID ENSG00000173786
Uniprot ID CN37_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
2-aminoethanethiol dioxygenase (ADO) [1]
HGNC ID HGNC:23506
Ensembl ID ENSG00000181915
Uniprot ID AEDO_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
2-oxoglutarate and iron dependent oxygenase domain containing 1 (OGFOD1) [1]
HGNC ID HGNC:25585
Ensembl ID ENSG00000087263
Uniprot ID OGFD1_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
2-oxoglutarate and iron dependent oxygenase domain containing 3 (OGFOD3) [1]
HGNC ID HGNC:26174
Ensembl ID ENSG00000181396
Uniprot ID OGFD3_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
24-dehydrocholesterol reductase (DHCR24) [1]
HGNC ID HGNC:2859
Ensembl ID ENSG00000116133
Uniprot ID DHC24_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
3'(2'), 5'-bisphosphate nucleotidase 2 (IMPAD1) [1]
HGNC ID HGNC:26019
Ensembl ID ENSG00000104331
Uniprot ID IMPA3_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
3'-phosphoadenosine 5'-phosphosulfate synthase 2 (PAPSS2) [1]
HGNC ID HGNC:8604
Ensembl ID ENSG00000198682
Uniprot ID PAPS2_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Pseudogene
Immunoglobulin pseudogene
In total 1 target gene(s)
Immunoglobulin lambda variable 1-41 (pseudogene) (IGLV1-41) [4]
HGNC ID HGNC:5878
Ensembl ID ENSG00000253818
Method RNA-seq GSE178859
Condition knock down
Evidence logFC: -2.355969971; p-value: 0.007041328
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Click to Download All Target Gene of This Genetic Class
Pseudogene
In total 479 target gene(s)
5-hydroxytryptamine receptor 7 pseudogene 1 (HTR7P1) [1]
HGNC ID HGNC:30411
Ensembl ID ENSG00000183935
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ABHD11 antisense RNA 1 (tail to tail) (ABHD11-AS1) [1]
HGNC ID HGNC:18289
Ensembl ID ENSG00000225969
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Acidic nuclear phosphoprotein 32 family member A pseudogene 1 (ANP32AP1) [1]
HGNC ID HGNC:42949
Ensembl ID ENSG00000259516
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
actin epsilon 1, pseudogene (FLJ42102) [1]
HGNC ID HGNC:51491
Ensembl ID ENSG00000172900
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Actin gamma 1 pseudogene 20 (ACTG1P20) [1]
HGNC ID HGNC:51500
Ensembl ID ENSG00000241547
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Activator of HSP90 ATPase homolog 2, pseudogene (AHSA2) [1]
HGNC ID HGNC:20437
Ensembl ID ENSG00000173209
Uniprot ID AHSA2_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ADAM metallopeptidase domain 1A (pseudogene) (ADAM1A) [1]
HGNC ID HGNC:187
Ensembl ID ENSG00000229186
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ADAM metallopeptidase domain 6 (pseudogene) (ADAM6) [1]
HGNC ID HGNC:213
Ensembl ID ENSG00000271968
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ADCY10 pseudogene 1 (ADCY10P1) [1]
HGNC ID HGNC:44143
Ensembl ID ENSG00000161912
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
AFG3 like matrix AAA peptidase subunit 1, pseudogene (AFG3L1P) [1]
HGNC ID HGNC:314
Ensembl ID ENSG00000223959
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
T cell receptor pseudogene
In total 1 target gene(s)
T cell receptor alpha variable 28 (pseudogene) (TRAV28) [4]
HGNC ID HGNC:12126
Ensembl ID ENSG00000258835
Method RNA-seq GSE178859
Condition knock down
Evidence logFC: 0.70170666; p-value: 0.020348038
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Click to Download All Target Gene of This Genetic Class
Long non-coding
Long non-coding RNA
In total 1220 target gene(s)
A1BG antisense RNA 1 (A1BG-AS1) [1]
HGNC ID HGNC:37133
Ensembl ID ENSG00000268895
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ABCC5 antisense RNA 1 (ABCC5-AS1) [1]
HGNC ID HGNC:40055
Ensembl ID ENSG00000223882
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ADAMTS9 antisense RNA 1 (ADAMTS9-AS1) [1]
HGNC ID HGNC:40625
Ensembl ID ENSG00000241158
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ADAMTSL4 antisense RNA 1 (ADAMTSL4-AS1) [1]
HGNC ID HGNC:32041
Ensembl ID ENSG00000203804
Uniprot ID A4AS1_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ADGRL1 antisense RNA 1 (LOC100507373) [1]
HGNC ID HGNC:55309
Ensembl ID ENSG00000267169
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ADPGK antisense RNA 1 (ADPGK-AS1) [1]
HGNC ID HGNC:44144
Ensembl ID ENSG00000260898
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
AGAP1 intronic transcript 1 (AGAP1-IT1) [1]
HGNC ID HGNC:41427
Ensembl ID ENSG00000235529
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
AGBL5 antisense RNA 1 (AGBL5-AS1) [1]
HGNC ID HGNC:41133
Ensembl ID ENSG00000231636
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
AGPAT4 intronic transcript 1 (AGPAT4-IT1) [1]
HGNC ID HGNC:20988
Ensembl ID ENSG00000279355
Uniprot ID AGIT1_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ALMS1 intronic transcript 1 (ALMS1-IT1) [1]
HGNC ID HGNC:41305
Ensembl ID ENSG00000230002
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Short non-coding
Micro RNA
In total 571 target gene(s)
MicroRNA 101-2 (MIR101-2) [1]
HGNC ID HGNC:31489
Ensembl ID ENSG00000199065
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103a-1 (MIR103A1) [1]
HGNC ID HGNC:31490
Ensembl ID ENSG00000199035
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103a-2 (MIR103A2) [1]
HGNC ID HGNC:31491
Ensembl ID ENSG00000199024
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103b-1 (MIR103B1) [1]
HGNC ID HGNC:35384
Ensembl ID ENSG00000283612
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103b-2 (MIR103B2) [1]
HGNC ID HGNC:35385
Ensembl ID ENSG00000283320
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 107 (MIR107) [1]
HGNC ID HGNC:31496
Ensembl ID ENSG00000198997
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
microRNA 10a (MIR10A) [1]
HGNC ID HGNC:31497
Ensembl ID ENSG00000284038
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 10b (MIR10B) [1]
HGNC ID HGNC:31498
Ensembl ID ENSG00000207744
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
microRNA 1178 (MIR1178) [1]
HGNC ID HGNC:35259
Ensembl ID ENSG00000283768
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
microRNA 1181 (MIR1181) [1]
HGNC ID HGNC:35262
Ensembl ID ENSG00000284268
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Misc RNA
In total 9 target gene(s)
Ribonuclease P RNA component H1 (RPPH1) [1]
HGNC ID HGNC:19273
Ensembl ID ENSG00000277209
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA component of mitochondrial RNA processing endoribonuclease (RMRP) [1]
HGNC ID HGNC:10031
Ensembl ID ENSG00000277027
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small NF90 (ILF3) associated RNA A8 (SNAR-A8) [1]
HGNC ID HGNC:34311
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small NF90 (ILF3) associated RNA B1 (SNAR-B1) [1]
HGNC ID HGNC:34317
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small NF90 (ILF3) associated RNA E (SNAR-E) [1]
HGNC ID HGNC:34325
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Telomerase RNA component (TERC) [1]
HGNC ID HGNC:11727
Ensembl ID ENSG00000270141
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small NF90 (ILF3) associated RNA A11 (SNAR-A11) [2]
HGNC ID HGNC:34314
Method PARCLIP-seq GSE71096
Cell Line HeLa Cervical cancer Homo sapiens CVCL_0030
Small NF90 (ILF3) associated RNA A7 (SNAR-A7) [2]
HGNC ID HGNC:34310
Method PARCLIP-seq GSE71096
Cell Line HeLa Cervical cancer Homo sapiens CVCL_0030
Small NF90 (ILF3) associated RNA I (SNAR-I) [2]
HGNC ID HGNC:34330
Method PARCLIP-seq GSE71096
Cell Line HeLa Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Ribosomal RNA
In total 6 target gene(s)
RNA, 18S ribosomal 5 (RNA18S5) [1]
HGNC ID HGNC:37657
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 28S ribosomal 5 (RNA28S5) [1]
HGNC ID HGNC:37659
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 45S pre-ribosomal 5 (RNA45S5) [1]
HGNC ID HGNC:44273
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5.8S ribosomal 5 (RNA5-8S5) [1]
HGNC ID HGNC:37660
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 5 (RNA5S5) [1]
HGNC ID HGNC:34366
Ensembl ID ENSG00000199396
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 9 (RNA5S9) [1]
HGNC ID HGNC:34370
Ensembl ID ENSG00000201321
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Small nuclear RNA
In total 34 target gene(s)
RNA, U1 small nuclear 3 (RNU1-3) [1]
HGNC ID HGNC:10130
Ensembl ID ENSG00000207513
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U1 small nuclear 4 (RNU1-4) [1]
HGNC ID HGNC:10128
Ensembl ID ENSG00000207389
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U11 small nuclear (RNU11) [1]
HGNC ID HGNC:10108
Ensembl ID ENSG00000274978
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U12 small nuclear (RNU12) [1]
HGNC ID HGNC:19380
Ensembl ID ENSG00000276027
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U2 small nuclear 1 (RNU2-1) [1]
HGNC ID HGNC:10142
Ensembl ID ENSG00000274585
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U4 small nuclear 1 (RNU4-1) [1]
HGNC ID HGNC:10192
Ensembl ID ENSG00000200795
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U4 small nuclear 2 (RNU4-2) [1]
HGNC ID HGNC:10193
Ensembl ID ENSG00000202538
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U4atac small nuclear (RNU4ATAC) [1]
HGNC ID HGNC:34016
Ensembl ID ENSG00000264229
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U5A small nuclear 1 (RNU5A-1) [1]
HGNC ID HGNC:10211
Ensembl ID ENSG00000199568
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U5B small nuclear 1 (RNU5B-1) [1]
HGNC ID HGNC:10212
Ensembl ID ENSG00000200156
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Small nucleolar RNA
In total 291 target gene(s)
Small Cajal body-specific RNA 1 (SCARNA1) [1]
HGNC ID HGNC:32555
Ensembl ID ENSG00000252947
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 10 (SCARNA10) [1]
HGNC ID HGNC:32567
Ensembl ID ENSG00000239002
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 11 (SCARNA11) [1]
HGNC ID HGNC:32568
Ensembl ID ENSG00000251898
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 12 (SCARNA12) [1]
HGNC ID HGNC:32569
Ensembl ID ENSG00000238795
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 13 (SCARNA13) [1]
HGNC ID HGNC:32570
Ensembl ID ENSG00000252481
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 14 (SCARNA14) [1]
HGNC ID HGNC:32571
Ensembl ID ENSG00000252712
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 16 (SCARNA16) [1]
HGNC ID HGNC:32573
Ensembl ID ENSG00000275143
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 18 (SCARNA18) [1]
HGNC ID HGNC:32559
Ensembl ID ENSG00000238835
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 18B (SCARNA18B) [1]
HGNC ID HGNC:52236
Ensembl ID ENSG00000238754
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 2 (SCARNA2) [1]
HGNC ID HGNC:32558
Ensembl ID ENSG00000278249
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Vault RNA
In total 4 target gene(s)
Vault RNA 1-1 (VTRNA1-1) [1]
HGNC ID HGNC:12654
Ensembl ID ENSG00000199990
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Vault RNA 1-2 (VTRNA1-2) [1]
HGNC ID HGNC:12655
Ensembl ID ENSG00000202111
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Vault RNA 1-3 (VTRNA1-3) [1]
HGNC ID HGNC:12656
Ensembl ID ENSG00000202515
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Vault RNA 2-1 (VTRNA2-1) [2]
HGNC ID HGNC:37054
Ensembl ID ENSG00000270123
Method PARCLIP-seq GSE71096
Cell Line HeLa Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Y RNA
In total 4 target gene(s)
RNA, Ro60-associated Y1 (RNY1) [1]
HGNC ID HGNC:10242
Ensembl ID ENSG00000201098
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, Ro60-associated Y3 (RNY3) [1]
HGNC ID HGNC:10243
Ensembl ID ENSG00000202354
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, Ro60-associated Y4 (RNY4) [1]
HGNC ID HGNC:10244
Ensembl ID ENSG00000252316
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, Ro60-associated Y5 (RNY5) [1]
HGNC ID HGNC:10248
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Other
Complex locus constituent
In total 5 target gene(s)
Protocadherin alpha 12 (PCDHA12) [4]
HGNC ID HGNC:8666
Ensembl ID ENSG00000251664
Uniprot ID PCDAC_HUMAN
Method RNA-seq GSE178859
Condition knock down
Evidence logFC: -0.628389375; p-value: 0.020219681
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin alpha 5 (PCDHA5) [3]
HGNC ID HGNC:8671
Ensembl ID ENSG00000204965
Uniprot ID PCDA5_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -0.726701168; p-value: 0.008523747
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin alpha 6 (PCDHA6) [3]
HGNC ID HGNC:8672
Ensembl ID ENSG00000081842
Uniprot ID PCDA6_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -1.111700635; p-value: 0.001524415
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin alpha 9 (PCDHA9) [3]
HGNC ID HGNC:8675
Ensembl ID ENSG00000204961
Uniprot ID PCDA9_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -0.839533248; p-value: 0.003899216
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
UDP glucuronosyltransferase family 1 member A7 (UGT1A7) [2]
HGNC ID HGNC:12539
Ensembl ID ENSG00000244122
Uniprot ID UD17_HUMAN
Method RNA-seq GSE71095
Condition knock down
Evidence logFC: -0.69760248; p-value: 0.002555747
Cell Line HeLa cell line Cervical cancer Homo sapiens CVCL_0030
Click to Download All Target Gene of This Genetic Class
Endogenous retrovirus
In total 1 target gene(s)
Endogenous retrovirus group K13 member 1 (ERVK13-1) [1]
HGNC ID HGNC:27548
Ensembl ID ENSG00000260565
Uniprot ID ENK13_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Immunoglobulin gene
In total 3 target gene(s)
Immunoglobulin heavy constant alpha 1 (IGHA1) [2]
HGNC ID HGNC:5478
Ensembl ID ENSG00000211895
Uniprot ID IGHA1_HUMAN
Method RNA-seq GSE71095
Condition knock down
Evidence logFC: 3.279521028; p-value: 0.017766363
Cell Line HeLa cell line Cervical cancer Homo sapiens CVCL_0030
Immunoglobulin heavy diversity 6-6 (IGHD6-6) [4]
HGNC ID HGNC:5517
Ensembl ID ENSG00000228131
Method RNA-seq GSE178859
Condition knock down
Evidence logFC: -2.641103706; p-value: 0.043519335
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Immunoglobulin heavy variable 1-45 (IGHV1-45) [4]
HGNC ID HGNC:5553
Ensembl ID ENSG00000211961
Uniprot ID HV145_HUMAN
Method RNA-seq GSE178859
Condition knock down
Evidence logFC: -1.457091992; p-value: 0.015067924
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Click to Download All Target Gene of This Genetic Class
Protocadherin
In total 21 target gene(s)
Protocadherin gamma subfamily C, 5 (PCDHGC5) [1]
HGNC ID HGNC:8718
Ensembl ID ENSG00000240764
Uniprot ID PCDGM_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Protocadherin beta 10 (PCDHB10) [3]
HGNC ID HGNC:8681
Ensembl ID ENSG00000120324
Uniprot ID PCDBA_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -1.387614056; p-value: 0.002291699
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin beta 11 (PCDHB11) [3]
HGNC ID HGNC:8682
Ensembl ID ENSG00000197479
Uniprot ID PCDBB_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -0.776120916; p-value: 0.01886291
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin beta 12 (PCDHB12) [3]
HGNC ID HGNC:8683
Ensembl ID ENSG00000120328
Uniprot ID PCDBC_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -1.481590641; p-value: 0.001914672
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin beta 13 (PCDHB13) [3]
HGNC ID HGNC:8684
Ensembl ID ENSG00000187372
Uniprot ID PCDBD_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -0.586272017; p-value: 0.005542103
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin beta 14 (PCDHB14) [3]
HGNC ID HGNC:8685
Ensembl ID ENSG00000120327
Uniprot ID PCDBE_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -1.791904253; p-value: 0.00101653
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin beta 15 (PCDHB15) [3]
HGNC ID HGNC:8686
Ensembl ID ENSG00000113248
Uniprot ID PCDBF_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -0.915100557; p-value: 0.004688729
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin beta 16 (PCDHB16) [3]
HGNC ID HGNC:14546
Ensembl ID ENSG00000272674
Uniprot ID PCDBG_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -0.619389891; p-value: 0.018377586
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin beta 4 (PCDHB4) [3]
HGNC ID HGNC:8689
Ensembl ID ENSG00000081818
Uniprot ID PCDB4_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -0.883064396; p-value: 0.011503492
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Protocadherin beta 5 (PCDHB5) [3]
HGNC ID HGNC:8690
Ensembl ID ENSG00000113209
Uniprot ID PCDB5_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: -1.689755662; p-value: 0.001141385
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Click to Download All Target Gene of This Genetic Class
Readthrough
In total 34 target gene(s)
ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene (ARHGAP27P1-BPTFP1-KPNA2P3) [1]
HGNC ID HGNC:52873
Ensembl ID ENSG00000215769
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
C1QTNF3-AMACR readthrough (NMD candidate) (C1QTNF3-AMACR) [1]
HGNC ID HGNC:49198
Ensembl ID ENSG00000273294
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
CENPS-CORT readthrough (APITD1-CORT) [1]
HGNC ID HGNC:38843
Ensembl ID ENSG00000251503
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
CHURC1-FNTB readthrough (CHURC1-FNTB) [1]
HGNC ID HGNC:42960
Ensembl ID ENSG00000125954
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
DNAAF4-CCPG1 readthrough (NMD candidate) (DYX1C1-CCPG1) [1]
HGNC ID HGNC:43019
Ensembl ID ENSG00000261771
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
GPR75-ASB3 readthrough (GPR75-ASB3) [1]
HGNC ID HGNC:40043
Ensembl ID ENSG00000270898
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
JMJD7-PLA2G4B readthrough (JMJD7-PLA2G4B) [1]
HGNC ID HGNC:34449
Ensembl ID ENSG00000168970
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
NDUFC2-KCTD14 readthrough (NDUFC2-KCTD14) [1]
HGNC ID HGNC:42956
Ensembl ID ENSG00000259112
Uniprot ID NDUCR_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RBM14-RBM4 readthrough (RBM14-RBM4) [1]
HGNC ID HGNC:38840
Ensembl ID ENSG00000248643
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
SUGT1P4-STRA6LP-CCDC180 readthrough (LOC100499484-C9ORF174) [1]
HGNC ID HGNC:53835
Ensembl ID ENSG00000255036
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
T cell receptor gene
In total 3 target gene(s)
T cell receptor beta joining 2-6 (TRBJ2-6) [4]
HGNC ID HGNC:12174
Ensembl ID ENSG00000211770
Uniprot ID TJB26_HUMAN
Method RNA-seq GSE178859
Condition knock down
Evidence logFC: 0.647402218; p-value: 0.000337509
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
T cell receptor beta variable 15 (TRBV15) [4]
HGNC ID HGNC:12190
Ensembl ID ENSG00000276819
Method RNA-seq GSE178859
Condition knock down
Evidence logFC: 0.588032915; p-value: 0.035543144
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
T cell receptor gamma constant 1 (TRGC1) [3]
HGNC ID HGNC:12275
Ensembl ID ENSG00000211689
Uniprot ID TRGC1_HUMAN
Method RNA-seq GSE168565
Condition knock down
Evidence logFC: 0.964452274; p-value: 0.00089814
Cell Line MOLM13 Acute myeloid leukemia Homo sapiens CVCL_2119
Click to Download All Target Gene of This Genetic Class
Unknown
In total 8 target gene(s)
Adhesion G protein-coupled receptor F2 (ADGRF2) [1]
HGNC ID HGNC:18991
Ensembl ID ENSG00000164393
Uniprot ID AGRF2_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Cerebellar degeneration related protein 1 (CDR1) [1]
HGNC ID HGNC:1798
Ensembl ID ENSG00000288642
Uniprot ID CDR1_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Chromosome 1 putative open reading frame 220 (C1orf220) [1]
HGNC ID HGNC:33805
Ensembl ID ENSG00000213057
Uniprot ID CA220_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Chromosome 19 open reading frame 48 (C19orf48) [1]
HGNC ID HGNC:29667
Ensembl ID ENSG00000167747
Uniprot ID CS048_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Chromosome 5 putative open reading frame 64 (C5orf64) [1]
HGNC ID HGNC:26744
Ensembl ID ENSG00000178722
Uniprot ID CE064_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Long intergenic non-protein coding RNA 672 (LINC00672) [1]
HGNC ID HGNC:44353
Ensembl ID ENSG00000263874
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Ribosomal protein SA pseudogene 58 (RPSAP58) [1]
HGNC ID HGNC:36809
Ensembl ID ENSG00000225178
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Surfactant associated 3 (SFTA3) [1]
HGNC ID HGNC:18387
Ensembl ID ENSG00000229415
Uniprot ID SFTA3_HUMAN
Method iCLIP-seq GSE78030; GSE86214
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
References
Ref 1 m(6)A RNA methylation promotes XIST-mediated transcriptional repression. Nature. 2016 Sep 15;537(7620):369-373. doi: 10.1038/nature19342. Epub 2016 Sep 7.
Ref 2 Nuclear m(6)A Reader YTHDC1 Regulates mRNA Splicing. Mol Cell. 2016 Feb 18;61(4):507-519. doi: 10.1016/j.molcel.2016.01.012. Epub 2016 Feb 11.
Ref 3 RNA-seq identifies differential expressed genes upon YTHDC1 knockdown in MOLM13 human acute myeloid leukemia cells
Ref 4 A critical role of nuclear m6A reader YTHDC1 in leukemogenesis by regulating MCM complex-mediated DNA replication. Blood. 2021 Dec 30;138(26):2838-2852. doi: 10.1182/blood.2021011707.