m6A Target Genes of This Regulator

General Information of the m6A Regulator (ID: REG00013)
Regulator Name Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2)
Synonyms
IGF2 mRNA-binding protein 2; IMP-2; Hepatocellular carcinoma autoantigen p62; IGF-II mRNA-binding protein 2; VICKZ family member 2; IMP2; VICKZ2
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Gene Name IGF2BP2
Regulator Type ERASER READER WRITER
Regulator Link Click to View Full Information of This Regulator
Full List of Target Gene(s) of This m6A Regulator ( Full Data Download )
Protein coding
Gene with protein product
In total 6976 target gene(s)
3-hydroxybutyrate dehydrogenase 2 (BDH2) [1]
HGNC ID HGNC:32389
Ensembl ID ENSG00000164039
Uniprot ID BDH2_HUMAN
Method RIP-seq logFC: 1.11E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
5'-3' exoribonuclease 2 (XRN2) [1]
HGNC ID HGNC:12836
Ensembl ID ENSG00000088930
Uniprot ID XRN2_HUMAN
Method RIP-seq logFC: 1.32E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Actin beta (ACTB) [1]
HGNC ID HGNC:132
Ensembl ID ENSG00000075624
Uniprot ID ACTB_HUMAN
Method RIP-seq logFC: 1.33E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Actin gamma 1 (ACTG1) [1]
HGNC ID HGNC:144
Ensembl ID ENSG00000184009
Uniprot ID ACTG_HUMAN
Method RIP-seq logFC: 1.99E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Activating transcription factor 2 (ATF2) [1]
HGNC ID HGNC:784
Ensembl ID ENSG00000115966
Uniprot ID ATF2_HUMAN
Method RIP-seq logFC: 1.37E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Activating transcription factor 4 (ATF4) [1]
HGNC ID HGNC:786
Ensembl ID ENSG00000128272
Uniprot ID ATF4_HUMAN
Method RIP-seq logFC: 1.82E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ADP ribosylation factor like GTPase 2 binding protein (ARL2BP) [1]
HGNC ID HGNC:17146
Ensembl ID ENSG00000102931
Uniprot ID AR2BP_HUMAN
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ADP ribosylation factor like GTPase 5B (ARL5B) [1]
HGNC ID HGNC:23052
Ensembl ID ENSG00000165997
Uniprot ID ARL5B_HUMAN
Method RIP-seq logFC: 1.17E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Aldehyde dehydrogenase 1 family member A1 (ALDH1A1) [1]
HGNC ID HGNC:402
Ensembl ID ENSG00000165092
Uniprot ID AL1A1_HUMAN
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase (AASDHPPT) [1]
HGNC ID HGNC:14235
Ensembl ID ENSG00000149313
Uniprot ID ADPPT_HUMAN
Method RIP-seq logFC: 3.70E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Pseudogene
Pseudogene
In total 329 target gene(s)
ADAM metallopeptidase domain 1A (pseudogene) (ADAM1A) [1]
HGNC ID HGNC:187
Ensembl ID ENSG00000229186
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Androgen induced 1 pseudogene 1 (AIG1P1) [1]
HGNC ID HGNC:43926
Ensembl ID ENSG00000249089
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Ankyrin repeat domain 20 family member A18, pseudogene (ANKRD20A18P) [1]
HGNC ID HGNC:23756
Ensembl ID ENSG00000249493
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Annexin A2 pseudogene 2 (ANXA2P2) [1]
HGNC ID HGNC:539
Ensembl ID ENSG00000231991
Uniprot ID AXA2L_HUMAN
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ATP binding cassette subfamily A member 11, pseudogene (ABCA11P) [1]
HGNC ID HGNC:31
Ensembl ID ENSG00000251595
Method RIP-seq logFC: 3.37E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Basic transcription factor 3 like 4 pseudogene 2 (BTF3L4P2) [1]
HGNC ID HGNC:39646
Ensembl ID ENSG00000213189
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
BMS1 pseudogene 10 (BMS1P10) [1]
HGNC ID HGNC:49154
Ensembl ID ENSG00000237238
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Bone morphogenetic protein receptor type 1A pseudogene 2 (BMPR1APS2) [1]
HGNC ID HGNC:21743
Ensembl ID ENSG00000232460
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Chromobox 3 pseudogene 9 (CBX3P9) [1]
HGNC ID HGNC:42881
Ensembl ID ENSG00000217241
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
CYCS pseudogene 10 (CYCSP10) [1]
HGNC ID HGNC:24384
Ensembl ID ENSG00000232901
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Long non-coding
Long non-coding RNA
In total 547 target gene(s)
ARAP1 antisense RNA 1 (ARAP1-AS1) [1]
HGNC ID HGNC:39993
Ensembl ID ENSG00000256007
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
C6orf47 antisense RNA 1 (C6orf47-AS1) [1]
HGNC ID HGNC:39767
Ensembl ID ENSG00000227198
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
CDKN2A divergent transcript (CDKN2A-AS1) [1]
HGNC ID HGNC:23831
Ensembl ID ENSG00000224854
Uniprot ID NSGX_HUMAN
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
DSG2 antisense RNA 1 (DSG2-AS1) [1]
HGNC ID HGNC:51311
Ensembl ID ENSG00000264859
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Family with sequence similarity 27 member B (FAM27B) [1]
HGNC ID HGNC:23667
Ensembl ID ENSG00000278763
Uniprot ID FAM27_HUMAN
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
FSIP2 antisense RNA 1 (FSIP2-AS1) [1]
HGNC ID HGNC:40978
Ensembl ID ENSG00000231646
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Long intergenic non-protein coding RNA 1123 (LINC01123) [1]
HGNC ID HGNC:49269
Ensembl ID ENSG00000204588
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Long intergenic non-protein coding RNA 1394 (LINC01394) [1]
HGNC ID HGNC:50670
Ensembl ID ENSG00000281809
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Long intergenic non-protein coding RNA 1473 (LINC01473) [1]
HGNC ID HGNC:51109
Ensembl ID ENSG00000237877
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Long intergenic non-protein coding RNA 308 (LINC00308) [1]
HGNC ID HGNC:16023
Ensembl ID ENSG00000184856
Uniprot ID CU074_HUMAN
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Short non-coding
Micro RNA
In total 400 target gene(s)
MicroRNA 3648-1 (MIR3648-1) [1]
HGNC ID HGNC:38941
Ensembl ID ENSG00000275708
Method RIP-seq logFC: 1.04E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 3648-2 (MIR3648-2) [1]
HGNC ID HGNC:50843
Ensembl ID ENSG00000264462
Method RIP-seq logFC: 1.04E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 3651 (MIR3651) [1]
HGNC ID HGNC:38897
Ensembl ID ENSG00000281156
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103a-1 (MIR103A1) [1]
HGNC ID HGNC:31490
Ensembl ID ENSG00000199035
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103b-1 (MIR103B1) [1]
HGNC ID HGNC:35384
Ensembl ID ENSG00000283612
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 103b-2 (MIR103B2) [1]
HGNC ID HGNC:35385
Ensembl ID ENSG00000283320
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 106b (MIR106B) [1]
HGNC ID HGNC:31495
Ensembl ID ENSG00000208036
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
microRNA 1182 (MIR1182) [1]
HGNC ID HGNC:35263
Ensembl ID ENSG00000283799
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MicroRNA 1200 (MIR1200) [1]
HGNC ID HGNC:35266
Ensembl ID ENSG00000221325
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
microRNA 122 (MIR122) [1]
HGNC ID HGNC:31501
Ensembl ID ENSG00000284440
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Misc RNA
In total 5 target gene(s)
Ribonuclease P RNA component H1 (RPPH1) [1]
HGNC ID HGNC:19273
Ensembl ID ENSG00000277209
Method RIP-seq logFC: 1.58E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA component of mitochondrial RNA processing endoribonuclease (RMRP) [1]
HGNC ID HGNC:10031
Ensembl ID ENSG00000277027
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small NF90 (ILF3) associated RNA A9 (SNAR-A9) [1]
HGNC ID HGNC:34312
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small NF90 (ILF3) associated RNA E (SNAR-E) [1]
HGNC ID HGNC:34325
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Telomerase RNA component (TERC) [1]
HGNC ID HGNC:11727
Ensembl ID ENSG00000270141
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Ribosomal RNA
In total 17 target gene(s)
RNA, 5S ribosomal 1 (RNA5S1) [1]
HGNC ID HGNC:34362
Ensembl ID ENSG00000199352
Method RIP-seq logFC: 6.21E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 10 (RNA5S10) [1]
HGNC ID HGNC:34371
Ensembl ID ENSG00000199910
Method RIP-seq logFC: 6.21E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 11 (RNA5S11) [1]
HGNC ID HGNC:34372
Ensembl ID ENSG00000199334
Method RIP-seq logFC: 6.21E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 12 (RNA5S12) [1]
HGNC ID HGNC:34373
Ensembl ID ENSG00000199270
Method RIP-seq logFC: 6.21E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 13 (RNA5S13) [1]
HGNC ID HGNC:34374
Ensembl ID ENSG00000202526
Method RIP-seq logFC: 6.21E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 14 (RNA5S14) [1]
HGNC ID HGNC:34375
Ensembl ID ENSG00000201355
Method RIP-seq logFC: 6.21E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 15 (RNA5S15) [1]
HGNC ID HGNC:34376
Ensembl ID ENSG00000201925
Method RIP-seq logFC: 6.21E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 16 (RNA5S16) [1]
HGNC ID HGNC:34377
Ensembl ID ENSG00000202257
Method RIP-seq logFC: 6.21E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 17 (RNA5S17) [1]
HGNC ID HGNC:34378
Ensembl ID ENSG00000200370
Method RIP-seq logFC: 6.21E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, 5S ribosomal 2 (RNA5S2) [1]
HGNC ID HGNC:34363
Ensembl ID ENSG00000201588
Method RIP-seq logFC: 6.21E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Small nuclear RNA
In total 22 target gene(s)
RNA, U1 small nuclear 1 (RNU1-1) [1]
HGNC ID HGNC:10120
Ensembl ID ENSG00000206652
Method RIP-seq logFC: 1.93E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U1 small nuclear 2 (RNU1-2) [1]
HGNC ID HGNC:10123
Ensembl ID ENSG00000207005
Method RIP-seq logFC: 1.93E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U1 small nuclear 3 (RNU1-3) [1]
HGNC ID HGNC:10130
Ensembl ID ENSG00000207513
Method RIP-seq logFC: 1.93E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U1 small nuclear 4 (RNU1-4) [1]
HGNC ID HGNC:10128
Ensembl ID ENSG00000207389
Method RIP-seq logFC: 1.93E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U4 small nuclear 1 (RNU4-1) [1]
HGNC ID HGNC:10192
Ensembl ID ENSG00000200795
Method RIP-seq logFC: 3.22E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U4 small nuclear 2 (RNU4-2) [1]
HGNC ID HGNC:10193
Ensembl ID ENSG00000202538
Method RIP-seq logFC: 3.24E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U6 small nuclear 1 (RNU6-1) [1]
HGNC ID HGNC:10227
Ensembl ID ENSG00000206625
Method RIP-seq logFC: 1.97E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U6 small nuclear 2 (RNU6-2) [1]
HGNC ID HGNC:34270
Ensembl ID ENSG00000207357
Method RIP-seq logFC: 1.97E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U6 small nuclear 7 (RNU6-7) [1]
HGNC ID HGNC:34284
Ensembl ID ENSG00000201654
Method RIP-seq logFC: 1.97E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, U6 small nuclear 8 (RNU6-8) [1]
HGNC ID HGNC:34285
Ensembl ID ENSG00000202337
Method RIP-seq logFC: 1.97E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Small nucleolar RNA
In total 268 target gene(s)
Small Cajal body-specific RNA 1 (SCARNA1) [1]
HGNC ID HGNC:32555
Ensembl ID ENSG00000252947
Method RIP-seq logFC: 1.10E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 10 (SCARNA10) [1]
HGNC ID HGNC:32567
Ensembl ID ENSG00000239002
Method RIP-seq logFC: 2.37E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 12 (SCARNA12) [1]
HGNC ID HGNC:32569
Ensembl ID ENSG00000238795
Method RIP-seq logFC: 2.64E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 13 (SCARNA13) [1]
HGNC ID HGNC:32570
Ensembl ID ENSG00000252481
Method RIP-seq logFC: 2.72E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 16 (SCARNA16) [1]
HGNC ID HGNC:32573
Ensembl ID ENSG00000275143
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 4 (SCARNA4) [1]
HGNC ID HGNC:32560
Ensembl ID ENSG00000280466
Method RIP-seq logFC: 2.16E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 5 (SCARNA5) [1]
HGNC ID HGNC:32561
Ensembl ID ENSG00000252010
Method RIP-seq logFC: 1.81E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 6 (SCARNA6) [1]
HGNC ID HGNC:32562
Ensembl ID ENSG00000251791
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small Cajal body-specific RNA 7 (SCARNA7) [1]
HGNC ID HGNC:32563
Ensembl ID ENSG00000238741
Method RIP-seq logFC: 1.72E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Small nucleolar RNA, C/D box 10 (SNORD10) [1]
HGNC ID HGNC:32706
Ensembl ID ENSG00000238917
Method RIP-seq logFC: 5.78E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Transfer RNA
In total 1 target gene(s)
Mitochondrially encoded tRNA-Ser (UCN) 1 (MT-TS1) [1]
HGNC ID HGNC:7497
Ensembl ID ENSG00000210151
Method RIP-seq logFC: 2.98E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Vault RNA
In total 3 target gene(s)
Vault RNA 1-1 (VTRNA1-1) [1]
HGNC ID HGNC:12654
Ensembl ID ENSG00000199990
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Vault RNA 1-3 (VTRNA1-3) [1]
HGNC ID HGNC:12656
Ensembl ID ENSG00000202515
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Vault RNA 2-1 (VTRNA2-1) [1]
HGNC ID HGNC:37054
Ensembl ID ENSG00000270123
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Y RNA
In total 2 target gene(s)
RNA, Ro60-associated Y3 (RNY3) [1]
HGNC ID HGNC:10243
Ensembl ID ENSG00000202354
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
RNA, Ro60-associated Y1 (RNY1) [3]
HGNC ID HGNC:10242
Ensembl ID ENSG00000201098
Method RNA-seq GSE109604
Condition knock down
Evidence logFC: -0.738082708; p-value: 2.52E-05
Cell Line ES-2 cell line Ovarian cancer Homo sapiens CVCL_3509
Click to Download All Target Gene of This Genetic Class
Other
Complex locus constituent
In total 2 target gene(s)
Protocadherin alpha subfamily C, 1 (PCDHAC1) [1]
HGNC ID HGNC:8676
Ensembl ID ENSG00000248383
Uniprot ID PCDC1_HUMAN
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Protocadherin alpha subfamily C, 2 (PCDHAC2) [1]
HGNC ID HGNC:8677
Ensembl ID ENSG00000243232
Uniprot ID PCDC2_HUMAN
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Endogenous retrovirus
In total 2 target gene(s)
Endogenous retrovirus group 48 member 1 (ERVH48-1) [1]
HGNC ID HGNC:17216
Ensembl ID ENSG00000233056
Uniprot ID SUPYN_HUMAN
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Endogenous retrovirus group K3 member 1 (ERVK3-1) [1]
HGNC ID HGNC:30466
Ensembl ID ENSG00000142396
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Immunoglobulin gene
In total 1 target gene(s)
Immunoglobulin lambda variable 5-52 (IGLV5-52) [1]
HGNC ID HGNC:5926
Ensembl ID ENSG00000211643
Uniprot ID LV552_HUMAN
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
Protocadherin
In total 7 target gene(s)
Protocadherin beta 1 (PCDHB1) [1]
HGNC ID HGNC:8680
Ensembl ID ENSG00000171815
Uniprot ID PCDB1_HUMAN
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Protocadherin beta 2 (PCDHB2) [1]
HGNC ID HGNC:8687
Ensembl ID ENSG00000112852
Uniprot ID PCDB2_HUMAN
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Protocadherin gamma subfamily C, 5 (PCDHGC5) [1]
HGNC ID HGNC:8718
Ensembl ID ENSG00000240764
Uniprot ID PCDGM_HUMAN
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Protocadherin beta 5 (PCDHB5) [3]
HGNC ID HGNC:8690
Ensembl ID ENSG00000113209
Uniprot ID PCDB5_HUMAN
Method RNA-seq GSE109604
Condition knock down
Evidence logFC: -0.779943095; p-value: 0.006318381
Cell Line ES-2 cell line Ovarian cancer Homo sapiens CVCL_3509
Protocadherin beta 6 (PCDHB6) [3]
HGNC ID HGNC:8691
Ensembl ID ENSG00000113211
Uniprot ID PCDB6_HUMAN
Method RNA-seq GSE109604
Condition knock down
Evidence logFC: -0.616850963; p-value: 0.001302344
Cell Line ES-2 cell line Ovarian cancer Homo sapiens CVCL_3509
Protocadherin gamma subfamily A, 1 (PCDHGA1) [3]
HGNC ID HGNC:8696
Ensembl ID ENSG00000204956
Uniprot ID PCDG1_HUMAN
Method RNA-seq GSE109604
Condition knock down
Evidence logFC: -0.58589226; p-value: 0.008835292
Cell Line ES-2 cell line Ovarian cancer Homo sapiens CVCL_3509
Protocadherin gamma subfamily A, 6 (PCDHGA6) [2]
HGNC ID HGNC:8704
Ensembl ID ENSG00000253731
Uniprot ID PCDG6_HUMAN
Method RNA-seq GSE191022
Condition knock down
Evidence logFC: -1.175032839; p-value: 0.002741089
Cell Line KGN cells Ovarian granulosa cell tumor Homo sapiens CVCL_0375
Click to Download All Target Gene of This Genetic Class
Readthrough
In total 39 target gene(s)
ANKHD1-EIF4EBP3 readthrough (ANKHD1-EIF4EBP3) [1]
HGNC ID HGNC:33530
Ensembl ID ENSG00000254996
Method RIP-seq logFC: 1.18E+00 GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
ARPIN-AP3S2 readthrough (C15orf38-AP3S2) [1]
HGNC ID HGNC:38824
Ensembl ID ENSG00000250021
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
BCL2L2-PABPN1 readthrough (BCL2L2-PABPN1) [1]
HGNC ID HGNC:42959
Ensembl ID ENSG00000258643
Uniprot ID B2CL2_HUMAN
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
BIVM-ERCC5 readthrough (BIVM-ERCC5) [1]
HGNC ID HGNC:43690
Ensembl ID ENSG00000270181
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
BLOC1S5-TXNDC5 readthrough (NMD candidate) (BLOC1S5-TXNDC5) [1]
HGNC ID HGNC:42001
Ensembl ID ENSG00000259040
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
CHURC1-FNTB readthrough (CHURC1-FNTB) [1]
HGNC ID HGNC:42960
Ensembl ID ENSG00000125954
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
EEF1E1-BLOC1S5 readthrough (NMD candidate) (EEF1E1-BLOC1S5) [1]
HGNC ID HGNC:49187
Ensembl ID ENSG00000265818
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
FMC1-LUC7L2 readthrough (C7orf55-LUC7L2) [1]
HGNC ID HGNC:44671
Ensembl ID ENSG00000269955
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
HNRNPUL2-BSCL2 readthrough (NMD candidate) (HNRNPUL2-BSCL2) [1]
HGNC ID HGNC:49189
Ensembl ID ENSG00000234857
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MSH5-SAPCD1 readthrough (NMD candidate) (MSH5-SAPCD1) [1]
HGNC ID HGNC:41994
Ensembl ID ENSG00000255152
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Click to Download All Target Gene of This Genetic Class
T cell receptor gene
In total 1 target gene(s)
T cell receptor beta constant 2 (TRBC2) [3]
HGNC ID HGNC:12157
Ensembl ID ENSG00000211772
Uniprot ID TRBC2_HUMAN
Method RNA-seq GSE109604
Condition knock down
Evidence logFC: -0.707968111; p-value: 0.049482586
Cell Line ES-2 cell line Ovarian cancer Homo sapiens CVCL_3509
Click to Download All Target Gene of This Genetic Class
Unknown
In total 8 target gene(s)
Cerebellar degeneration related protein 1 (CDR1) [1]
HGNC ID HGNC:1798
Ensembl ID ENSG00000288642
Uniprot ID CDR1_HUMAN
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Ribosomal protein SA pseudogene 58 (RPSAP58) [1]
HGNC ID HGNC:36809
Ensembl ID ENSG00000225178
Method RIP-seq logFC: Inf GSE90639
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Chromosome 10 putative open reading frame 55 (C10orf55) [1]
HGNC ID HGNC:31008
Ensembl ID ENSG00000222047
Uniprot ID CJ055_HUMAN
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
elongin A3, pseudogene (TCEB3C) [1]
HGNC ID HGNC:24617
Ensembl ID ENSG00000288631
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Long intergenic non-protein coding RNA 672 (LINC00672) [1]
HGNC ID HGNC:44353
Ensembl ID ENSG00000263874
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
MYCN opposite strand (MYCNOS) [1]
HGNC ID HGNC:16911
Ensembl ID ENSG00000233718
Uniprot ID NCYM_HUMAN
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Zinc finger protein 883 (ZNF883) [1]
HGNC ID HGNC:27271
Ensembl ID ENSG00000228623
Uniprot ID ZN883_HUMAN
Method eCLIP-seq GSE78507
Cell Line HEK293T Normal Homo sapiens CVCL_0063
Orofacial cleft 1 candidate 1 (OFCC1) [3]
HGNC ID HGNC:21017
Ensembl ID ENSG00000181355
Uniprot ID OFCC1_HUMAN
Method RNA-seq GSE109604
Condition knock down
Evidence logFC: -0.721965092; p-value: 0.004693866
Cell Line ES-2 cell line Ovarian cancer Homo sapiens CVCL_3509
Click to Download All Target Gene of This Genetic Class
References
Ref 1 Recognition of RNA N(6)-methyladenosine by IGF2BP proteins enhances mRNA stability and translation. Nat Cell Biol. 2018 Mar;20(3):285-295. doi: 10.1038/s41556-018-0045-z. Epub 2018 Feb 23.
Ref 2 Insulin-like growth factor 2 mRNA-binding protein 2-regulated alternative splicing of nuclear factor 1 C-type causes excessive granulosa cell proliferation in polycystic ovary syndrome. Cell Prolif. 2022 Apr;55(4):e13216.
Ref 3 IGF2BP1 enhances an aggressive tumor cell phenotype by impairing miRNA-directed downregulation of oncogenic factors. Nucleic Acids Res. 2018 Jul 6;46(12):6285-6303.