m6A Target Gene Information
General Information of the m6A Target Gene (ID: M6ATAR01704)
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Non-coding RNA
m6A Regulator: YTH domain-containing family protein 1 (YTHDF1)
| In total 1 item(s) under this m6A regulator | ||
| Crosstalk ID: M6ACROT05087 | ||
| Epigenetic Regulator | DPPA2 upstream binding RNA (DUBR) | |
| Regulated Target | YTH domain-containing family protein 1 (YTHDF1) | |
| Crosstalk relationship | ncRNA → m6A | |
m6A Regulator: YTH domain-containing family protein 3 (YTHDF3)
| In total 1 item(s) under this m6A regulator | ||
| Crosstalk ID: M6ACROT05088 | ||
| Epigenetic Regulator | DPPA2 upstream binding RNA (DUBR) | |
| Regulated Target | YTH N6-methyladenosine RNA binding protein F3 (YTHDF3) | |
| Crosstalk relationship | ncRNA → m6A | |
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01704)
| In total 4 m6A sequence/site(s) in this target gene | |||
| mod ID: A2ISITE008214 | Click to Show/Hide the Full List | ||
| mod site | chr17:45922092-45922093:+ | [2] | |
| Sequence | GCCGTGGAGCGATCACTGCAACCTCTGTCTCCCAGGTTCAA | ||
| Transcript ID List | ENST00000262410.9; ENST00000570299.5; ENST00000351559.9; ENST00000340799.9; ENST00000446361.7; ENST00000571311.5; ENST00000334239.12; ENST00000344290.9; ENST00000535772.5 | ||
| External Link | RMBase: RNA-editing_site_58571 | ||
| mod ID: A2ISITE008215 | Click to Show/Hide the Full List | ||
| mod site | chr17:45946530-45946531:+ | [2] | |
| Sequence | ATTGCTTGAACCCGAGAGGTAGAGGTTGCAGTGAGCCGAGA | ||
| Transcript ID List | ENST00000571311.5; ENST00000344290.9; ENST00000570299.5; ENST00000446361.7; ENST00000535772.5; rmsk_4703617; ENST00000262410.9; ENST00000334239.12; ENST00000351559.9; ENST00000340799.9 | ||
| External Link | RMBase: RNA-editing_site_58572 | ||
| mod ID: A2ISITE008216 | Click to Show/Hide the Full List | ||
| mod site | chr17:46019558-46019559:+ | [2] | |
| Sequence | TTGTATTTCCTGTGGAGACGAGGTTTTGCCACGTTGCCCAG | ||
| Transcript ID List | ENST00000571987.5; ENST00000420682.6; ENST00000415613.6; ENST00000340799.9; ENST00000431008.7; ENST00000446361.7; ENST00000576518.1; ENST00000535772.5; ENST00000334239.12; ENST00000344290.9; ENST00000351559.9; ENST00000262410.9; ENST00000574436.5 | ||
| External Link | RMBase: RNA-editing_site_58573 | ||
| mod ID: A2ISITE008217 | Click to Show/Hide the Full List | ||
| mod site | chr17:46022830-46022831:+ | [2] | |
| Sequence | TCCCAGTTGCTCTGGAGGTTAAGGTGGGAAGATTGCTTGAG | ||
| Transcript ID List | ENST00000340799.9; ENST00000446361.7; ENST00000415613.6; ENST00000574436.5; ENST00000431008.7; ENST00000262410.9; ENST00000351559.9; ENST00000334239.12; ENST00000571987.5; ENST00000576518.1; rmsk_4703778; ENST00000344290.9; ENST00000420682.6; ENST00000535772.5 | ||
| External Link | RMBase: RNA-editing_site_58574 | ||
2'-O-Methylation (2'-O-Me)
| In total 6 m6A sequence/site(s) in this target gene | |||
| mod ID: 2OMSITE000154 | Click to Show/Hide the Full List | ||
| mod site | chr17:45952014-45952015:+ | [3] | |
| Sequence | GTTTATTTTCCTGTCTGTGTATCGCTTCTCGGCCTTTTGGC | ||
| Seq Type List | RiboMeth-seq | ||
| Transcript ID List | ENST00000351559.9; ENST00000344290.9; ENST00000570299.5; ENST00000262410.9; rmsk_4703630; ENST00000571311.5; ENST00000334239.12; ENST00000535772.5; ENST00000340799.9; ENST00000446361.7 | ||
| External Link | RMBase: Nm_site_2491 | ||
| mod ID: 2OMSITE000156 | Click to Show/Hide the Full List | ||
| mod site | chr17:45952024-45952025:+ | [3] | |
| Sequence | CTGTCTGTGTATCGCTTCTCGGCCTTTTGGCTAAGATCAAG | ||
| Seq Type List | RiboMeth-seq | ||
| Transcript ID List | rmsk_4703630; ENST00000570299.5; ENST00000571311.5; ENST00000351559.9; ENST00000446361.7; ENST00000334239.12; ENST00000340799.9; ENST00000262410.9; ENST00000535772.5; ENST00000344290.9 | ||
| External Link | RMBase: Nm_site_2493 | ||
| mod ID: 2OMSITE000157 | Click to Show/Hide the Full List | ||
| mod site | chr17:45952025-45952026:+ | [3] | |
| Sequence | TGTCTGTGTATCGCTTCTCGGCCTTTTGGCTAAGATCAAGT | ||
| Seq Type List | RiboMeth-seq | ||
| Transcript ID List | ENST00000340799.9; ENST00000446361.7; ENST00000344290.9; ENST00000262410.9; rmsk_4703630; ENST00000571311.5; ENST00000535772.5; ENST00000570299.5; ENST00000334239.12; ENST00000351559.9 | ||
| External Link | RMBase: Nm_site_2494 | ||
| mod ID: 2OMSITE000158 | Click to Show/Hide the Full List | ||
| mod site | chr17:45952032-45952033:+ | [3] | |
| Sequence | GTATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTATTTT | ||
| Seq Type List | RiboMeth-seq | ||
| Transcript ID List | ENST00000344290.9; rmsk_4703630; ENST00000262410.9; ENST00000446361.7; ENST00000535772.5; ENST00000570299.5; ENST00000340799.9; ENST00000334239.12; ENST00000351559.9; ENST00000571311.5 | ||
| External Link | RMBase: Nm_site_2495 | ||
| mod ID: 2OMSITE000159 | Click to Show/Hide the Full List | ||
| mod site | chr17:45952038-45952039:+ | [3] | |
| Sequence | CTTCTCGGCCTTTTGGCTAAGATCAAGTGTATTTTCCTGTC | ||
| Seq Type List | RiboMeth-seq | ||
| Transcript ID List | ENST00000262410.9; ENST00000446361.7; ENST00000571311.5; ENST00000340799.9; ENST00000570299.5; ENST00000344290.9; rmsk_4703630; ENST00000535772.5; ENST00000351559.9; ENST00000334239.12 | ||
| External Link | RMBase: Nm_site_2496 | ||
| mod ID: 2OMSITE000155 | Click to Show/Hide the Full List | ||
| mod site | chr17:45952015-45952016:+ | [3] | |
| Sequence | TTTATTTTCCTGTCTGTGTATCGCTTCTCGGCCTTTTGGCT | ||
| Seq Type List | RiboMeth-seq | ||
| Transcript ID List | ENST00000262410.9; ENST00000344290.9; ENST00000334239.12; ENST00000340799.9; rmsk_4703630; ENST00000571311.5; ENST00000446361.7; ENST00000351559.9; ENST00000570299.5; ENST00000535772.5 | ||
| External Link | RMBase: Nm_site_2492 | ||
Other RNA modification (m2,2,7Gpp(pN))
| In total 1 m6A sequence/site(s) in this target gene | |||
| mod ID: RNASITE000006 | Click to Show/Hide the Full List | ||
| mod site | chr17:45952013-45952014:+ | [4] | |
| Sequence | TGTTTATTTTCCTGTCTGTGTATCGCTTCTCGGCCTTTTGG | ||
| Transcript ID List | ENST00000334239.12; ENST00000535772.5; ENST00000446361.7; ENST00000344290.9; ENST00000262410.9; ENST00000340799.9; ENST00000351559.9; ENST00000571311.5; ENST00000570299.5 | ||
| External Link | RMBase: otherMod_site_528 | ||
5-methylcytidine (m5C)
| In total 4 m6A sequence/site(s) in this target gene | |||
| mod ID: M5CSITE001198 | Click to Show/Hide the Full List | ||
| mod site | chr17:45894592-45894593:+ | [5] | |
| Sequence | AGCTCCGGCACCAACAGCAGCGCCGCTGCCACCGCCCACCT | ||
| Seq Type List | Bisulfite-seq | ||
| Transcript ID List | ENST00000344290.9; ENST00000571311.5; ENST00000340799.9; ENST00000262410.9; ENST00000351559.9; ENST00000535772.5; ENST00000570299.5 | ||
| External Link | RMBase: m5C_site_19293 | ||
| mod ID: M5CSITE001199 | Click to Show/Hide the Full List | ||
| mod site | chr17:45974437-45974438:+ | [5] | |
| Sequence | CCGGCAAGCAGGCTGCCGCGCAGCCCCACACGGAGATCCCA | ||
| Seq Type List | Bisulfite-seq | ||
| Transcript ID List | ENST00000415613.6; ENST00000570299.5; ENST00000340799.9; ENST00000574436.5; ENST00000431008.7; ENST00000571987.5; ENST00000262410.9; ENST00000576518.1; ENST00000344290.9; ENST00000351559.9; ENST00000571311.5; ENST00000446361.7; ENST00000420682.6; ENST00000535772.5; ENST00000334239.12 | ||
| External Link | RMBase: m5C_site_19294 | ||
| mod ID: M5CSITE001200 | Click to Show/Hide the Full List | ||
| mod site | chr17:45999546-45999547:+ | ||
| Sequence | GCAGCAGGAATGGGGCTGAGCAGGGAAGACAACTTTCCATT | ||
| Cell/Tissue List | frontalcortex | ||
| Seq Type List | Bisulfite-seq | ||
| Transcript ID List | ENST00000574436.5; ENST00000571987.5; ENST00000351559.9; ENST00000576518.1; ENST00000420682.6; ENST00000446361.7; ENST00000431008.7; ENST00000262410.9; ENST00000334239.12; ENST00000537309.1; ENST00000344290.9; ENST00000535772.5; ENST00000570299.5; ENST00000415613.6; ENST00000340799.9 | ||
| External Link | RMBase: m5C_site_19295 | ||
| mod ID: M5CSITE001201 | Click to Show/Hide the Full List | ||
| mod site | chr17:46026924-46026925:+ | ||
| Sequence | AGGGACTTGGCAGTAGAAATCCAGGGCCTCCCCTGGGGCTG | ||
| Cell/Tissue List | muscle | ||
| Seq Type List | Bisulfite-seq | ||
| Transcript ID List | ENST00000262410.9; ENST00000344290.9; ENST00000535772.5; ENST00000340799.9; ENST00000351559.9; ENST00000446361.7 | ||
| External Link | RMBase: m5C_site_19296 | ||
N6-methyladenosine (m6A)
| In total 14 m6A sequence/site(s) in this target gene | |||
| mod ID: M6ASITE033462 | Click to Show/Hide the Full List | ||
| mod site | chr17:45991486-45991487:+ | [6] | |
| Sequence | ATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCT | ||
| Motif Score | 2.053113095 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000571987.5; ENST00000431008.7; ENST00000351559.9; ENST00000535772.5; ENST00000420682.6; ENST00000446361.7; ENST00000262410.9; ENST00000570299.5; ENST00000574436.5; ENST00000576518.1; ENST00000344290.9; ENST00000334239.12; ENST00000340799.9; ENST00000415613.6 | ||
| External Link | RMBase: m6A_site_367793 | ||
| mod ID: M6ASITE033463 | Click to Show/Hide the Full List | ||
| mod site | chr17:45991570-45991571:+ | [6] | |
| Sequence | AAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTAAG | ||
| Motif Score | 2.897386905 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000570299.5; ENST00000576518.1; ENST00000340799.9; ENST00000420682.6; ENST00000334239.12; ENST00000574436.5; ENST00000431008.7; ENST00000571987.5; ENST00000446361.7; ENST00000415613.6; ENST00000262410.9; ENST00000351559.9; ENST00000535772.5; ENST00000344290.9 | ||
| External Link | RMBase: m6A_site_367794 | ||
| mod ID: M6ASITE033464 | Click to Show/Hide the Full List | ||
| mod site | chr17:46014255-46014256:+ | [6] | |
| Sequence | TCTCCAGGTGCAAATAGTCTACAAACCAGTTGACCTGAGCA | ||
| Motif Score | 2.078666667 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000262410.9; ENST00000570299.5; ENST00000571987.5; ENST00000415613.6; ENST00000446361.7; ENST00000340799.9; ENST00000334239.12; ENST00000420682.6; ENST00000431008.7; ENST00000351559.9; ENST00000576518.1; ENST00000574436.5; ENST00000535772.5; ENST00000344290.9 | ||
| External Link | RMBase: m6A_site_367795 | ||
| mod ID: M6ASITE033465 | Click to Show/Hide the Full List | ||
| mod site | chr17:46014306-46014307:+ | [6] | |
| Sequence | CAAGTGTGGCTCATTAGGCAACATCCATCATAAACCAGGTA | ||
| Motif Score | 2.173910714 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000344290.9; ENST00000571987.5; ENST00000576518.1; ENST00000574436.5; ENST00000535772.5; ENST00000334239.12; ENST00000446361.7; ENST00000431008.7; ENST00000570299.5; ENST00000420682.6; ENST00000262410.9; ENST00000340799.9; ENST00000351559.9; ENST00000415613.6 | ||
| External Link | RMBase: m6A_site_367796 | ||
| mod ID: M6ASITE033466 | Click to Show/Hide the Full List | ||
| mod site | chr17:46018692-46018693:+ | [6] | |
| Sequence | GTCGAAGATTGGGTCCCTGGACAATATCACCCACGTCCCTG | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000446361.7; ENST00000415613.6; ENST00000420682.6; ENST00000535772.5; ENST00000576518.1; ENST00000351559.9; ENST00000431008.7; ENST00000570299.5; ENST00000574436.5; ENST00000344290.9; ENST00000340799.9; ENST00000571987.5; ENST00000334239.12; ENST00000262410.9 | ||
| External Link | RMBase: m6A_site_367797 | ||
| mod ID: M6ASITE033467 | Click to Show/Hide the Full List | ||
| mod site | chr17:46024049-46024050:+ | [6] | |
| Sequence | GTCGCCAGTGGTGTCTGGGGACACGTCTCCACGGCATCTCA | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000415613.6; ENST00000431008.7; ENST00000576518.1; ENST00000262410.9; ENST00000574436.5; ENST00000571987.5; ENST00000420682.6; ENST00000340799.9; ENST00000351559.9; ENST00000446361.7; ENST00000535772.5; ENST00000344290.9; ENST00000334239.12 | ||
| External Link | RMBase: m6A_site_367798 | ||
| mod ID: M6ASITE033468 | Click to Show/Hide the Full List | ||
| mod site | chr17:46024097-46024098:+ | [6] | |
| Sequence | CTCCTCCACCGGCAGCATCGACATGGTAGACTCGCCCCAGC | ||
| Motif Score | 2.865571429 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000262410.9; ENST00000571987.5; ENST00000431008.7; ENST00000574436.5; ENST00000535772.5; ENST00000415613.6; ENST00000344290.9; ENST00000334239.12; ENST00000446361.7; ENST00000351559.9; ENST00000420682.6; ENST00000340799.9; ENST00000576518.1 | ||
| External Link | RMBase: m6A_site_367799 | ||
| mod ID: M6ASITE033469 | Click to Show/Hide the Full List | ||
| mod site | chr17:46025986-46025987:+ | [6] | |
| Sequence | GCTGGAGCAGCTGAACATATACATAGATGTTGCCCTGCCCT | ||
| Motif Score | 2.110482143 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000262410.9; ENST00000344290.9; ENST00000446361.7; ENST00000535772.5; ENST00000351559.9; ENST00000340799.9 | ||
| External Link | RMBase: m6A_site_367800 | ||
| mod ID: M6ASITE033470 | Click to Show/Hide the Full List | ||
| mod site | chr17:46026175-46026176:+ | [6] | |
| Sequence | ACGAGGTGTCTCTCACCCCCACACTGGGACTCGTGTGGCCT | ||
| Motif Score | 2.053113095 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000446361.7; ENST00000535772.5; ENST00000351559.9; ENST00000340799.9; ENST00000262410.9; ENST00000344290.9 | ||
| External Link | RMBase: m6A_site_367801 | ||
| mod ID: M6ASITE033471 | Click to Show/Hide the Full List | ||
| mod site | chr17:46026728-46026729:+ | [6] | |
| Sequence | ATGACTTGACAAGTCAGGAGACACTGTTCCCAAAGCCTTGA | ||
| Motif Score | 2.897386905 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000340799.9; ENST00000351559.9; ENST00000446361.7; ENST00000344290.9; ENST00000262410.9; ENST00000535772.5 | ||
| External Link | RMBase: m6A_site_367802 | ||
| mod ID: M6ASITE033472 | Click to Show/Hide the Full List | ||
| mod site | chr17:46026777-46026778:+ | [6] | |
| Sequence | CCTCAGCCCGCTGACCTTGCACAAACTCCATCTGCTGCCAT | ||
| Motif Score | 2.830589286 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000340799.9; ENST00000535772.5; ENST00000262410.9; ENST00000344290.9; ENST00000351559.9; ENST00000446361.7 | ||
| External Link | RMBase: m6A_site_367803 | ||
| mod ID: M6ASITE033473 | Click to Show/Hide the Full List | ||
| mod site | chr17:46026824-46026825:+ | [7] | |
| Sequence | AGGGAAGCCGCCTTTGCAAAACATTGCTGCCTAAAGAAACT | ||
| Motif Score | 2.20572619 | ||
| Cell/Tissue List | brain | ||
| Seq Type List | m6A-REF-seq | ||
| Transcript ID List | ENST00000351559.9; ENST00000535772.5; ENST00000340799.9; ENST00000344290.9; ENST00000262410.9; ENST00000446361.7 | ||
| External Link | RMBase: m6A_site_367804 | ||
| mod ID: M6ASITE033474 | Click to Show/Hide the Full List | ||
| mod site | chr17:46027344-46027345:+ | [6] | |
| Sequence | GCTTGTGATCTTAAATGAGGACAATCCCCCCAGGGCTGGGC | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000262410.9; ENST00000351559.9; ENST00000446361.7; ENST00000340799.9; ENST00000344290.9; ENST00000535772.5 | ||
| External Link | RMBase: m6A_site_367805 | ||
| mod ID: M6ASITE033475 | Click to Show/Hide the Full List | ||
| mod site | chr17:46027705-46027706:+ | [7] | |
| Sequence | GGGGTTTCTCTTTTCCACTGACAGGCTTTCCCAGGCAGCTG | ||
| Motif Score | 2.859755952 | ||
| Cell/Tissue List | brain | ||
| Seq Type List | m6A-REF-seq | ||
| Transcript ID List | ENST00000535772.5; ENST00000351559.9; ENST00000446361.7; ENST00000340799.9; ENST00000344290.9; ENST00000262410.9 | ||
| External Link | RMBase: m6A_site_367806 | ||
Pseudouridine (Pseudo)
| In total 3 m6A sequence/site(s) in this target gene | |||
| mod ID: PSESITE000094 | Click to Show/Hide the Full List | ||
| mod site | chr17:45952019-45952020:+ | [4] | |
| Sequence | TTTTCCTGTCTGTGTATCGCTTCTCGGCCTTTTGGCTAAGA | ||
| Transcript ID List | ENST00000571311.5; rmsk_4703630; ENST00000262410.9; ENST00000446361.7; ENST00000535772.5; ENST00000340799.9; ENST00000570299.5; ENST00000351559.9; ENST00000344290.9; ENST00000334239.12 | ||
| External Link | RMBase: Pseudo_site_2203 | ||
| mod ID: PSESITE000095 | Click to Show/Hide the Full List | ||
| mod site | chr17:45952020-45952021:+ | [8] | |
| Sequence | TTTCCTGTCTGTGTATCGCTTCTCGGCCTTTTGGCTAAGAT | ||
| Transcript ID List | ENST00000344290.9; ENST00000570299.5; rmsk_4703630; ENST00000446361.7; ENST00000340799.9; ENST00000571311.5; ENST00000334239.12; ENST00000535772.5; ENST00000351559.9; ENST00000262410.9 | ||
| External Link | RMBase: Pseudo_site_2204 | ||
| mod ID: PSESITE000096 | Click to Show/Hide the Full List | ||
| mod site | chr17:45952028-45952029:+ | [4] | |
| Sequence | CTGTGTATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTA | ||
| Transcript ID List | ENST00000351559.9; ENST00000344290.9; rmsk_4703630; ENST00000340799.9; ENST00000446361.7; ENST00000570299.5; ENST00000571311.5; ENST00000262410.9; ENST00000535772.5; ENST00000334239.12 | ||
| External Link | RMBase: Pseudo_site_2205 | ||
References