General Information of the m6A Target Gene (ID: M6ATAR01696)
Target Name Homeobox protein MSX-1 (MSX1)
Synonyms
Homeobox protein Hox-7; Msh homeobox 1-like protein
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Gene Name MSX1
Chromosomal Location 4p16.2
Family Msh homeobox family
Function
Acts as a transcriptional repressor (By similarity). Capable of transcription autoinactivation (By similarity). Binds to the consensus sequence 5'-C/GTAAT-3' in downstream activin regulatory elements (DARE) in the gene promoter, thereby repressing the transcription of CGA/alpha-GSU and GNRHR (By similarity). Represses transcription of myoblast differentiation factors (By similarity). Binds to core enhancer regions in target gene promoters of myoblast differentiation factors with binding specificity facilitated by interaction with PIAS1 (By similarity). Recruits histone H3 methyltransferases such as EHMT2/G9a to gene promoter regions which leads to inhibition of myoblast differentiation via transcriptional repression of differentiation factors (By similarity). Regulates, in a stage-specific manner, a developmental program of gene expression in the fetal tooth bud that controls odontoblast differentiation and proliferation of dental mesenchymal cells (By similarity). At the bud stage, required for mesenchymal molar tooth bud development via facilitating reciprocal signaling between dental epithelial and mesenchymal cells (By similarity). May also regulate expression of Wnt antagonists such as DKK2 and SFPR2 in the developing tooth mesenchyme (By similarity). Required for BMP4 expression in dental mesenchyme cells (By similarity). Also, in response to BMP4, required for BMP4 expression in neighboring dental epithelial cells (By similarity). Required for maximal FGF4-induced expression of SDC1 in dental mesenchyme cells (By similarity). Also in response to SDC1, required for SDC1 expression in neighboring dental epithelial cells (By similarity). At the early bell stage, acts to drive proliferation of dental mesenchyme cells, however during the late bell stage acts as an homeostatic regulator of the cell cycle (By similarity). Regulates proliferation and inhibits premature mesenchymal odontogenesis during the bell stage via inhibition of the Wnt signaling component CTNNB1 and subsequent repression of the odontoblast differentiation factors BMP2, BMP4, LEF1, ALPL and BGLAP/OCN (By similarity). Additionally, required for correct development and fusion of the palatal shelves and embryonic mandibular formation (By similarity). Plays a role in embryonic bone formation of the middle ear, skull and nasal bones (By similarity). Required for correct formation and thickness of the nail plate (By similarity). May play a role in limb-pattern formation (By similarity).
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Gene ID 4487
Uniprot ID
MSX1_HUMAN
HGNC ID
HGNC:7391
KEGG ID
hsa:4487
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Non-coding RNA
m6A Regulator: Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05070
Epigenetic Regulator P53 upregulated regulator of p53 levels (PURPL)
Regulated Target Insulin like growth factor 2 mRNA binding protein 2 (IGF2BP2)
Crosstalk relationship ncRNA → m6A
Disease Colorectal cancer
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01696)
Homeobox protein MSX-1 (MSX1)
N4-acetylcytidine (ac4C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: AC4SITE000084 Click to Show/Hide the Full List
mod site chr4:4863203-4863204:+
Sequence CAGCCCTGGTGCTGTACCCCCGACGTGCTCCCCTGCTCGGC
Cell/Tissue List DLD1
Seq Type List acRIP-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: ac4C_site_1444
5-methylcytidine (m5C)
In total 7 m6A sequence/site(s) in this target gene
mod ID: M5CSITE003296 Click to Show/Hide the Full List
mod site chr4:4859807-4859808:+
Sequence CGCCCGGCCAGGGCCCCGGGCGCTCGCAGAGGCCGGCCGCG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m5C_site_33822
mod ID: M5CSITE003297 Click to Show/Hide the Full List
mod site chr4:4859839-4859840:+
Sequence CCGGCCGCGCTCCCAGCCCGCCCGGAGCCCATGCCCGGCGG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m5C_site_33823
mod ID: M5CSITE003298 Click to Show/Hide the Full List
mod site chr4:4859840-4859841:+
Sequence CGGCCGCGCTCCCAGCCCGCCCGGAGCCCATGCCCGGCGGC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m5C_site_33824
mod ID: M5CSITE003299 Click to Show/Hide the Full List
mod site chr4:4859841-4859842:+
Sequence GGCCGCGCTCCCAGCCCGCCCGGAGCCCATGCCCGGCGGCT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m5C_site_33825
mod ID: M5CSITE003300 Click to Show/Hide the Full List
mod site chr4:4859846-4859847:+
Sequence CGCTCCCAGCCCGCCCGGAGCCCATGCCCGGCGGCTGGCCA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m5C_site_33826
mod ID: M5CSITE003301 Click to Show/Hide the Full List
mod site chr4:4859847-4859848:+
Sequence GCTCCCAGCCCGCCCGGAGCCCATGCCCGGCGGCTGGCCAG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m5C_site_33827
mod ID: M5CSITE003302 Click to Show/Hide the Full List
mod site chr4:4859848-4859849:+
Sequence CTCCCAGCCCGCCCGGAGCCCATGCCCGGCGGCTGGCCAGT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m5C_site_33828
N6-methyladenosine (m6A)
In total 32 m6A sequence/site(s) in this target gene
mod ID: M6ASITE065185 Click to Show/Hide the Full List
mod site chr4:4859694-4859695:+ [2]
Sequence GCCGGCGAGTGCTCCCGGGAACTCTGCCTGCGCGGCGGCAG
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; Jurkat; GSC-11; HEK293T; HEK293A-TOA; MSC; iSLK; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m6A_site_629661
mod ID: M6ASITE065186 Click to Show/Hide the Full List
mod site chr4:4859951-4859952:+ [2]
Sequence ACTCGGTGTCAAAGTGGAGGACTCCGCCTTCGGCAAGCCGG
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; HEK293T; A549; GSC-11; HEK293A-TOA; iSLK; MSC; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629662
mod ID: M6ASITE065187 Click to Show/Hide the Full List
mod site chr4:4860264-4860265:+ [2]
Sequence GGCCATTTCTCGGTGGGGGGACTCCTCAAGCTGCCAGAAGA
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; Jurkat; GSC-11; HEK293T; iSLK; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629663
mod ID: M6ASITE065188 Click to Show/Hide the Full List
mod site chr4:4860325-4860326:+ [2]
Sequence GCCCCGAGAAGCCCGAGAGGACCCCGTGGATGCAGAGCCCC
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; Jurkat; GSC-11; HEK293T; iSLK; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629664
mod ID: M6ASITE065189 Click to Show/Hide the Full List
mod site chr4:4862437-4862438:+ [2]
Sequence TGTTTAGGCCTAAGATGTGGACATCGAGCCTTCAACGTGGG
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; Jurkat; GSC-11; HEK293T; iSLK; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000468421.1; ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629665
mod ID: M6ASITE065190 Click to Show/Hide the Full List
mod site chr4:4862502-4862503:+ [2]
Sequence TCTTCATTTGCAAAAAGTAGACAGGAACTTCTCCCCTGCGG
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; Jurkat; GSC-11; HEK293T; endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000652146.1; rmsk_1227194; ENST00000468421.1; ENST00000382723.5
External Link RMBase: m6A_site_629666
mod ID: M6ASITE065191 Click to Show/Hide the Full List
mod site chr4:4862508-4862509:+ [2]
Sequence TTTGCAAAAAGTAGACAGGAACTTCTCCCCTGCGGGGTTGC
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; Jurkat; GSC-11; HEK293T; endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List rmsk_1227194; ENST00000382723.5; ENST00000652146.1; ENST00000468421.1
External Link RMBase: m6A_site_629667
mod ID: M6ASITE065192 Click to Show/Hide the Full List
mod site chr4:4862734-4862735:+ [2]
Sequence CCAGCCTGCACCCTCCGCAAACACAAGACGAACCGTAAGCC
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; iSLK; MSC; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000468421.1; ENST00000652146.1; ENST00000382723.5
External Link RMBase: m6A_site_629668
mod ID: M6ASITE065193 Click to Show/Hide the Full List
mod site chr4:4862745-4862746:+ [2]
Sequence CCTCCGCAAACACAAGACGAACCGTAAGCCGCGGACGCCCT
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000382723.5; ENST00000468421.1; ENST00000652146.1
External Link RMBase: m6A_site_629669
mod ID: M6ASITE065194 Click to Show/Hide the Full List
mod site chr4:4862895-4862896:+ [2]
Sequence GGTGAAGATATGGTTCCAGAACCGCCGCGCCAAGGCAAAGA
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; HEK293T; hNPCs; A549; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000652146.1; ENST00000468421.1; ENST00000382723.5
External Link RMBase: m6A_site_629670
mod ID: M6ASITE065195 Click to Show/Hide the Full List
mod site chr4:4862917-4862918:+ [2]
Sequence CGCCGCGCCAAGGCAAAGAGACTACAAGAGGCAGAGCTGGA
Motif Score 3.319380952
Cell/Tissue List HeLa; HepG2; HEK293T; hNPCs; A549; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1; ENST00000468421.1
External Link RMBase: m6A_site_629671
mod ID: M6ASITE065196 Click to Show/Hide the Full List
mod site chr4:4862920-4862921:+ [3]
Sequence CGCGCCAAGGCAAAGAGACTACAAGAGGCAGAGCTGGAGAA
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000468421.1; ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629672
mod ID: M6ASITE065197 Click to Show/Hide the Full List
mod site chr4:4863097-4863098:+ [2]
Sequence CTGCCTGTGGCGCCCGTGGGACTCTACACGGCCCATGTGGG
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; A549; HEK293T; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m6A_site_629673
mod ID: M6ASITE065198 Click to Show/Hide the Full List
mod site chr4:4863102-4863103:+ [4]
Sequence TGTGGCGCCCGTGGGACTCTACACGGCCCATGTGGGCTACA
Motif Score 2.078666667
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629674
mod ID: M6ASITE065199 Click to Show/Hide the Full List
mod site chr4:4863137-4863138:+ [3]
Sequence GCTACAGCATGTACCACCTGACATAGAGGGTCCCAGGTCGC
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629675
mod ID: M6ASITE065200 Click to Show/Hide the Full List
mod site chr4:4863205-4863206:+ [4]
Sequence GCCCTGGTGCTGTACCCCCGACGTGCTCCCCTGCTCGGCAC
Motif Score 2.839505952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629676
mod ID: M6ASITE065201 Click to Show/Hide the Full List
mod site chr4:4863252-4863253:+ [3]
Sequence CCGCCTTCCCTTTAACCCTCACACTGCTCCAGTTTCACCTC
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629677
mod ID: M6ASITE065202 Click to Show/Hide the Full List
mod site chr4:4863361-4863362:+ [3]
Sequence CTCTTCTAGCATTTAGATCTACACTCTCGAGTTAAAGATGG
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m6A_site_629678
mod ID: M6ASITE065203 Click to Show/Hide the Full List
mod site chr4:4863386-4863387:+ [5]
Sequence CTCGAGTTAAAGATGGGGAAACTGAGGGCAGAGAGGTTAAC
Motif Score 2.627720238
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629679
mod ID: M6ASITE065204 Click to Show/Hide the Full List
mod site chr4:4863436-4863437:+ [4]
Sequence TAAGGTCCCCAGCAGAATTGACAGTTGAACAGAGCTAGAGG
Motif Score 2.859755952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m6A_site_629680
mod ID: M6ASITE065205 Click to Show/Hide the Full List
mod site chr4:4863444-4863445:+ [4]
Sequence CCAGCAGAATTGACAGTTGAACAGAGCTAGAGGCCATGTCT
Motif Score 2.951386905
Cell/Tissue List HEK293T; Huh7
Seq Type List MeRIP-seq; DART-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629681
mod ID: M6ASITE065206 Click to Show/Hide the Full List
mod site chr4:4863489-4863490:+ [3]
Sequence CATAGCTTTTCCCTGTCCTGACACCAGGCAAGAAAAGCGCA
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m6A_site_629682
mod ID: M6ASITE065207 Click to Show/Hide the Full List
mod site chr4:4863526-4863527:+ [4]
Sequence CGCAGAGAAATCGGTGTCTGACGATTTTGGAAATGAGAACA
Motif Score 2.833690476
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629683
mod ID: M6ASITE065208 Click to Show/Hide the Full List
mod site chr4:4863544-4863545:+ [2]
Sequence TGACGATTTTGGAAATGAGAACAATCTCAAAAAAAAAAAAA
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; hESC-HEK293T; Huh7; HEK293A-TOA; endometrial
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629684
mod ID: M6ASITE065209 Click to Show/Hide the Full List
mod site chr4:4863605-4863606:+ [2]
Sequence AAAGAAAAGAGAAAAAAAAGACTAGCCAGCCAGGAAGATGA
Motif Score 3.319380952
Cell/Tissue List HeLa; HepG2; HEK293T; hNPCs; Huh7; HEK293A-TOA; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629685
mod ID: M6ASITE065210 Click to Show/Hide the Full List
mod site chr4:4863656-4863657:+ [2]
Sequence CTTCCATTGGAAAATTTAAGACAAGTTCAACAACAAAACAT
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; HEK293T; hESC-HEK293T; hNPCs; Huh7; HEK293A-TOA; endometrial
Seq Type List m6A-seq; MeRIP-seq; DART-seq; MAZTER-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m6A_site_629686
mod ID: M6ASITE065211 Click to Show/Hide the Full List
mod site chr4:4863673-4863674:+ [2]
Sequence AAGACAAGTTCAACAACAAAACATTTGCTCTGGGGGGCAGG
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; HEK293T; hNPCs; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m6A_site_629687
mod ID: M6ASITE065212 Click to Show/Hide the Full List
mod site chr4:4863698-4863699:+ [2]
Sequence TGCTCTGGGGGGCAGGGAAAACACAGATGTGTTGCAAAGGT
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; HEK293T; hESC-HEK293T; hNPCs; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m6A_site_629688
mod ID: M6ASITE065213 Click to Show/Hide the Full List
mod site chr4:4863730-4863731:+ [2]
Sequence TGCAAAGGTAGGTTGAAGGGACCTCTCTCTTACCAGTACCA
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; HEK293T; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629689
mod ID: M6ASITE065214 Click to Show/Hide the Full List
mod site chr4:4863754-4863755:+ [2]
Sequence CTCTCTTACCAGTACCAGAAACACAATTGTAAAATTAAAAA
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; HEK293T; hESC-HEK293T; Huh7
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000652146.1; ENST00000382723.5
External Link RMBase: m6A_site_629690
mod ID: M6ASITE065215 Click to Show/Hide the Full List
mod site chr4:4863784-4863785:+ [2]
Sequence AAAATTAAAAAAAAAAAAAAACTCTTTCTATTTAACAGTAC
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629691
mod ID: M6ASITE065216 Click to Show/Hide the Full List
mod site chr4:4863822-4863823:+ [2]
Sequence TACATTTGTGTGGCTCTCAAACATCCCTTTGGAAGGGATTG
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000382723.5; ENST00000652146.1
External Link RMBase: m6A_site_629692