m6A Target Gene Information
General Information of the m6A Target Gene (ID: M6ATAR01506)
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Non-coding RNA
m6A Regulator: Insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1)
| In total 1 item(s) under this m6A regulator | ||
| Crosstalk ID: M6ACROT05899 | ||
| Epigenetic Regulator | Circ_CMTM3 | |
| Regulated Target | Insulin like growth factor 2 mRNA binding protein 1 (IGF2BP1) | |
| Crosstalk relationship | ncRNA → m6A | |
| Disease | Hepatocellular carcinoma | |
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01506)
| In total 6 m6A sequence/site(s) in this target gene | |||
| mod ID: A2ISITE009787 | Click to Show/Hide the Full List | ||
| mod site | chr1:7966576-7966577:+ | [2] | |
| Sequence | GTGTGGTGGTGCATGCCTGTAGTTCTAGCTACTTAAGAGGC | ||
| Transcript ID List | ENST00000377488.5; ENST00000493373.5; ENST00000493678.5; ENST00000377493.9; ENST00000338639.10; ENST00000460192.5; ENST00000497113.1; ENST00000465354.5; ENST00000469225.1; ENST00000377491.5; rmsk_13729 | ||
| External Link | RMBase: RNA-editing_site_778 | ||
| mod ID: A2ISITE009788 | Click to Show/Hide the Full List | ||
| mod site | chr1:7968160-7968161:+ | [3] | |
| Sequence | TTACTAAAAATACACAGATTAGCCGGGCACAGTGGTGGGTA | ||
| Transcript ID List | rmsk_13732; ENST00000497113.1; ENST00000338639.10; ENST00000460192.5; ENST00000493373.5; ENST00000493678.5; ENST00000377493.9; ENST00000469225.1; ENST00000465354.5; ENST00000377491.5; ENST00000377488.5 | ||
| External Link | RMBase: RNA-editing_site_779 | ||
| mod ID: A2ISITE009789 | Click to Show/Hide the Full List | ||
| mod site | chr1:7972393-7972394:+ | [2] | |
| Sequence | GGGAGGATCGCTTGAAGGCAAGAGTTAGAGGCTGCAGTGAG | ||
| Transcript ID List | ENST00000377488.5; ENST00000493678.5; rmsk_13739; ENST00000338639.10; ENST00000377493.9; ENST00000469225.1; ENST00000377491.5; ENST00000493373.5 | ||
| External Link | RMBase: RNA-editing_site_780 | ||
| mod ID: A2ISITE009790 | Click to Show/Hide the Full List | ||
| mod site | chr1:7978560-7978561:+ | [2] | |
| Sequence | TGCCACCACAAGTTTCTTGTAGACTGGGCACAGTGGCTTCC | ||
| Transcript ID List | ENST00000377488.5; ENST00000377491.5; ENST00000377493.9; ENST00000338639.10; ENST00000493373.5; ENST00000493678.5; ENST00000469225.1 | ||
| External Link | RMBase: RNA-editing_site_781 | ||
| mod ID: A2ISITE009796 | Click to Show/Hide the Full List | ||
| mod site | chr1:7978716-7978717:+ | [2] | |
| Sequence | TTAGCCAGGCATGGTGATGCACACTGGTAGTTGCAGCTGCT | ||
| Transcript ID List | rmsk_13755; ENST00000493373.5; ENST00000377491.5; ENST00000469225.1; ENST00000377493.9; ENST00000377488.5; ENST00000338639.10; ENST00000493678.5 | ||
| External Link | RMBase: RNA-editing_site_782 | ||
| mod ID: A2ISITE009807 | Click to Show/Hide the Full List | ||
| mod site | chr1:7979701-7979702:+ | [2] | |
| Sequence | TGTAGAGACAGGGTCTAACCATATTGCACAGTCTGGTCTTG | ||
| Transcript ID List | ENST00000377493.9; ENST00000493678.5; ENST00000469225.1; ENST00000377491.5; ENST00000377488.5; ENST00000338639.10; ENST00000493373.5 | ||
| External Link | RMBase: RNA-editing_site_783 | ||
5-methylcytidine (m5C)
N6-methyladenosine (m6A)
| In total 27 m6A sequence/site(s) in this target gene | |||
| mod ID: M6ASITE048498 | Click to Show/Hide the Full List | ||
| mod site | chr1:7954300-7954301:+ | [4] | |
| Sequence | GCTGCGGCCGCCGGAAGTGGACCTACGTCATGCAGGTCAGT | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | U2OS; fibroblasts; A549 | ||
| Seq Type List | MeRIP-seq; m6A-seq | ||
| Transcript ID List | ENST00000493373.5 | ||
| External Link | RMBase: m6A_site_5012 | ||
| mod ID: M6ASITE048575 | Click to Show/Hide the Full List | ||
| mod site | chr1:7961896-7961897:+ | [4] | |
| Sequence | CGGTGTCCCGCTGGCTCAGAACCGGCGCGGGGCCTGGGTCG | ||
| Motif Score | 2.930744048 | ||
| Cell/Tissue List | U2OS; hESCs; HEK293T; fibroblasts; A549; HEK293A-TOA; MSC; TIME; iSLK | ||
| Seq Type List | MeRIP-seq; m6A-seq | ||
| Transcript ID List | ENST00000465354.5; ENST00000377493.9; ENST00000338639.10; ENST00000493373.5; ENST00000493678.5; ENST00000460192.5; ENST00000377491.5 | ||
| External Link | RMBase: m6A_site_5013 | ||
| mod ID: M6ASITE048586 | Click to Show/Hide the Full List | ||
| mod site | chr1:7962062-7962063:+ | [5] | |
| Sequence | CTGGCTAGCCGTTTTATTAAACTCTGTTTTGCGTGGACGGT | ||
| Motif Score | 2.627720238 | ||
| Cell/Tissue List | A549; MSC; TIME | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000465354.5; ENST00000377488.5; ENST00000338639.10; ENST00000377491.5; ENST00000493678.5; ENST00000493373.5; ENST00000377493.9; ENST00000460192.5 | ||
| External Link | RMBase: m6A_site_5014 | ||
| mod ID: M6ASITE048597 | Click to Show/Hide the Full List | ||
| mod site | chr1:7962085-7962086:+ | [5] | |
| Sequence | CTGTTTTGCGTGGACGGTAAACCCTCCAGATAATCTGTAAA | ||
| Motif Score | 2.185083333 | ||
| Cell/Tissue List | A549; MSC; TIME | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000465354.5; ENST00000460192.5; ENST00000377488.5; ENST00000493373.5; ENST00000377493.9; ENST00000377491.5; ENST00000338639.10; ENST00000493678.5 | ||
| External Link | RMBase: m6A_site_5015 | ||
| mod ID: M6ASITE048608 | Click to Show/Hide the Full List | ||
| mod site | chr1:7962770-7962771:+ | [6] | |
| Sequence | TTTTTTTTTAAGGCTTGTAAACATATAACATAAAAATGGCT | ||
| Motif Score | 2.20572619 | ||
| Cell/Tissue List | hESC-HEK293T; HepG2; A549; MSC; TIME | ||
| Seq Type List | MAZTER-seq; m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000497113.1; ENST00000377488.5; ENST00000493373.5; ENST00000377491.5; ENST00000460192.5; ENST00000465354.5; ENST00000338639.10; ENST00000493678.5; ENST00000377493.9 | ||
| External Link | RMBase: m6A_site_5016 | ||
| mod ID: M6ASITE048619 | Click to Show/Hide the Full List | ||
| mod site | chr1:7962777-7962778:+ | [6] | |
| Sequence | TTAAGGCTTGTAAACATATAACATAAAAATGGCTTCCAAAA | ||
| Motif Score | 2.168095238 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000377488.5; ENST00000377491.5; ENST00000377493.9; ENST00000493678.5; ENST00000338639.10; ENST00000460192.5; ENST00000497113.1; ENST00000493373.5; ENST00000465354.5 | ||
| External Link | RMBase: m6A_site_5017 | ||
| mod ID: M6ASITE048655 | Click to Show/Hide the Full List | ||
| mod site | chr1:7965357-7965358:+ | [7] | |
| Sequence | TGCAGGCCTGGCTGGAAAAGACCCAGTACAGTGTAGCCGTG | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | HepG2; MT4; A549 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000377493.9; ENST00000460192.5; ENST00000469225.1; ENST00000493373.5; ENST00000497113.1; ENST00000493678.5; ENST00000465354.5; ENST00000377491.5; ENST00000377488.5; ENST00000338639.10 | ||
| External Link | RMBase: m6A_site_5018 | ||
| mod ID: M6ASITE048723 | Click to Show/Hide the Full List | ||
| mod site | chr1:7969122-7969123:+ | [7] | |
| Sequence | CCTGCTACTCTGCAGCGTGGACATCCTTGCATGTCACTACA | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | HepG2; MT4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000338639.10; ENST00000497113.1; ENST00000377488.5; ENST00000377491.5; ENST00000377493.9; ENST00000460192.5; ENST00000493678.5; ENST00000469225.1; ENST00000465354.5; ENST00000493373.5 | ||
| External Link | RMBase: m6A_site_5019 | ||
| mod ID: M6ASITE048800 | Click to Show/Hide the Full List | ||
| mod site | chr1:7969346-7969347:+ | [8] | |
| Sequence | TGTTTTAAACTGTTACAGGGACCATATGATGTGGTGGTTCT | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | MT4 | ||
| Seq Type List | MeRIP-seq | ||
| Transcript ID List | ENST00000493373.5; ENST00000460192.5; ENST00000469225.1; ENST00000465354.5; ENST00000377488.5; ENST00000338639.10; ENST00000377493.9; ENST00000377491.5; ENST00000497113.1; ENST00000493678.5 | ||
| External Link | RMBase: m6A_site_5020 | ||
| mod ID: M6ASITE048860 | Click to Show/Hide the Full List | ||
| mod site | chr1:7970913-7970914:+ | [9] | |
| Sequence | TCTGCTGCTGTGAAGGAGATACTGAAGGAGCAGGAAAACCG | ||
| Motif Score | 2.53247619 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000493678.5; ENST00000377493.9; ENST00000377488.5; ENST00000338639.10; ENST00000497113.1; ENST00000460192.5; ENST00000493373.5; ENST00000469225.1; ENST00000377491.5; ENST00000465354.5 | ||
| External Link | RMBase: m6A_site_5021 | ||
| mod ID: M6ASITE048886 | Click to Show/Hide the Full List | ||
| mod site | chr1:7977698-7977699:+ | [9] | |
| Sequence | TAGGTTTTGGAAGTAAAGTTACAACACACCCTCTTGCTAAA | ||
| Motif Score | 2.07285119 | ||
| Cell/Tissue List | HEK293T; hESC-HEK293T | ||
| Seq Type List | DART-seq; MAZTER-seq | ||
| Transcript ID List | ENST00000493678.5; ENST00000469225.1; ENST00000377493.9; ENST00000377488.5; ENST00000338639.10; ENST00000493373.5; ENST00000377491.5 | ||
| External Link | RMBase: m6A_site_5022 | ||
| mod ID: M6ASITE048887 | Click to Show/Hide the Full List | ||
| mod site | chr1:7977720-7977721:+ | [9] | |
| Sequence | AACACACCCTCTTGCTAAAGACAAAATGATGAATGGAGGTA | ||
| Motif Score | 2.897386905 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000469225.1; ENST00000493678.5; ENST00000338639.10; ENST00000377488.5; ENST00000493373.5; ENST00000377493.9; ENST00000377491.5 | ||
| External Link | RMBase: m6A_site_5023 | ||
| mod ID: M6ASITE048910 | Click to Show/Hide the Full List | ||
| mod site | chr1:7984899-7984900:+ | [6] | |
| Sequence | TTTCTACTTTGCAGGTCATTACACCTACTCTGAGAATCGTG | ||
| Motif Score | 2.07285119 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000493373.5; ENST00000469225.1; ENST00000338639.10; ENST00000377488.5; ENST00000377491.5; ENST00000493678.5; ENST00000377493.9 | ||
| External Link | RMBase: m6A_site_5024 | ||
| mod ID: M6ASITE048914 | Click to Show/Hide the Full List | ||
| mod site | chr1:7984943-7984944:+ | [6] | |
| Sequence | AAAAAGACGGCCTGATTCTTACAAGCCGGGGGCCTGGGACC | ||
| Motif Score | 2.07285119 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000377493.9; ENST00000338639.10; ENST00000377491.5; ENST00000377488.5; ENST00000493678.5; ENST00000493373.5; ENST00000469225.1 | ||
| External Link | RMBase: m6A_site_5025 | ||
| mod ID: M6ASITE048915 | Click to Show/Hide the Full List | ||
| mod site | chr1:7984961-7984962:+ | [7] | |
| Sequence | TTACAAGCCGGGGGCCTGGGACCAGCTTCGAGTTTGCGCTT | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HepG2; endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000493678.5; ENST00000377493.9; ENST00000377491.5; ENST00000493373.5; ENST00000338639.10; ENST00000377488.5; ENST00000469225.1 | ||
| External Link | RMBase: m6A_site_5026 | ||
| mod ID: M6ASITE048916 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985049-7985050:+ | [10] | |
| Sequence | GGCTCCACTTGTTCTTAAAGACTAGAGCAGCGAACTGCGAC | ||
| Motif Score | 3.319380952 | ||
| Cell/Tissue List | HeLa; HEK293T; H1299; endometrial; AML | ||
| Seq Type List | m6A-seq; DART-seq; MeRIP-seq; miCLIP | ||
| Transcript ID List | ENST00000377488.5; ENST00000377493.9; ENST00000338639.10; ENST00000493373.5; ENST00000469225.1; ENST00000493678.5; ENST00000377491.5 | ||
| External Link | RMBase: m6A_site_5027 | ||
| mod ID: M6ASITE048917 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985062-7985063:+ | [10] | |
| Sequence | CTTAAAGACTAGAGCAGCGAACTGCGACGATCACTTAGAGA | ||
| Motif Score | 3.373380952 | ||
| Cell/Tissue List | HeLa; HEK293T; H1299; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000377493.9; ENST00000469225.1; ENST00000377488.5; ENST00000493678.5; ENST00000338639.10; ENST00000377491.5 | ||
| External Link | RMBase: m6A_site_5028 | ||
| mod ID: M6ASITE048918 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985074-7985075:+ | [9] | |
| Sequence | AGCAGCGAACTGCGACGATCACTTAGAGAAACAGGCCGTTA | ||
| Motif Score | 2.469291667 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000377491.5; ENST00000377493.9; ENST00000377488.5; ENST00000493678.5; ENST00000469225.1; ENST00000338639.10 | ||
| External Link | RMBase: m6A_site_5029 | ||
| mod ID: M6ASITE048919 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985084-7985085:+ | [10] | |
| Sequence | TGCGACGATCACTTAGAGAAACAGGCCGTTAGGAATCCATT | ||
| Motif Score | 2.20572619 | ||
| Cell/Tissue List | HeLa; HEK293T; H1299; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000338639.10; ENST00000377493.9; ENST00000493678.5; ENST00000377488.5; ENST00000377491.5; ENST00000469225.1 | ||
| External Link | RMBase: m6A_site_5030 | ||
| mod ID: M6ASITE048920 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985124-7985125:+ | [10] | |
| Sequence | TCTCACTGTGTTCGCTCTAAACAAAACAGTGGTAGGTTAAT | ||
| Motif Score | 2.20572619 | ||
| Cell/Tissue List | HeLa; HEK293T; hESC-HEK293T; HepG2; H1299; endometrial | ||
| Seq Type List | m6A-seq; DART-seq; MAZTER-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000377491.5; ENST00000377493.9; ENST00000469225.1; ENST00000493678.5; ENST00000338639.10 | ||
| External Link | RMBase: m6A_site_5031 | ||
| mod ID: M6ASITE048921 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985129-7985130:+ | [10] | |
| Sequence | CTGTGTTCGCTCTAAACAAAACAGTGGTAGGTTAATGTGTT | ||
| Motif Score | 2.20572619 | ||
| Cell/Tissue List | HeLa; hESC-HEK293T; HepG2; H1299; endometrial; AML | ||
| Seq Type List | m6A-seq; MAZTER-seq; MeRIP-seq; miCLIP | ||
| Transcript ID List | ENST00000377491.5; ENST00000338639.10; ENST00000493678.5; ENST00000377493.9; ENST00000469225.1 | ||
| External Link | RMBase: m6A_site_5032 | ||
| mod ID: M6ASITE048950 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985167-7985168:+ | [9] | |
| Sequence | GTTCAGAAGTCGCTGTCCTTACTACTTTTGCGGAAGTATGG | ||
| Motif Score | 2.494845238 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000377491.5; ENST00000469225.1; ENST00000377493.9; ENST00000338639.10; ENST00000493678.5 | ||
| External Link | RMBase: m6A_site_5033 | ||
| mod ID: M6ASITE049051 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985170-7985171:+ | [9] | |
| Sequence | CAGAAGTCGCTGTCCTTACTACTTTTGCGGAAGTATGGAAG | ||
| Motif Score | 2.500660714 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000469225.1; ENST00000493678.5; ENST00000377491.5; ENST00000377493.9; ENST00000338639.10 | ||
| External Link | RMBase: m6A_site_5034 | ||
| mod ID: M6ASITE049134 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985193-7985194:+ | [9] | |
| Sequence | TTTGCGGAAGTATGGAAGTCACAACTACACAGAGATTTCTC | ||
| Motif Score | 2.047297619 | ||
| Cell/Tissue List | HEK293T; hESC-HEK293T | ||
| Seq Type List | DART-seq; MAZTER-seq | ||
| Transcript ID List | ENST00000469225.1; ENST00000338639.10; ENST00000377491.5; ENST00000377493.9; ENST00000493678.5 | ||
| External Link | RMBase: m6A_site_5035 | ||
| mod ID: M6ASITE049156 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985196-7985197:+ | [9] | |
| Sequence | GCGGAAGTATGGAAGTCACAACTACACAGAGATTTCTCAGC | ||
| Motif Score | 2.595904762 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000377491.5; ENST00000338639.10; ENST00000493678.5; ENST00000377493.9; ENST00000469225.1 | ||
| External Link | RMBase: m6A_site_5036 | ||
| mod ID: M6ASITE049157 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985199-7985200:+ | [6] | |
| Sequence | GAAGTATGGAAGTCACAACTACACAGAGATTTCTCAGCCTA | ||
| Motif Score | 2.078666667 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000469225.1; ENST00000377493.9; ENST00000377491.5; ENST00000338639.10; ENST00000493678.5 | ||
| External Link | RMBase: m6A_site_5037 | ||
| mod ID: M6ASITE049158 | Click to Show/Hide the Full List | ||
| mod site | chr1:7985219-7985220:+ | [9] | |
| Sequence | ACACAGAGATTTCTCAGCCTACAAATTGTGTCTATACATTT | ||
| Motif Score | 2.078666667 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000338639.10; ENST00000377493.9; ENST00000377491.5; ENST00000469225.1; ENST00000493678.5 | ||
| External Link | RMBase: m6A_site_5038 | ||
References