m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR01355)

Target Name	long intergenic non-protein coding RNA 1106 (LINC01106)
Synonyms	FLJ38359 Click to Show/Hide
Gene Name	LINC01106
Chromosomal Location	2q13
Gene ID	151009
HGNC ID	HGNC:26769

Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator

Non-coding RNA

m6A Regulator: Protein virilizer homolog (VIRMA)

Regulator Info

In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05826		Crosstalk Info
Epigenetic Regulator	Long intergenic non-protein coding RNA 1106 (LINC01106)
Crosstalk relationship	m6A → ncRNA
Disease	Lung cancer	Disease Info

RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01355)

long intergenic non-protein coding RNA 1106 (LINC01106)

N6-methyladenosine (m6A)

In total 18 m6A sequence/site(s) in this target gene
mod ID: M6ASITE046870		Click to Show/Hide the Full List
mod site	chr2:110375891-110375892:-		[2]
Sequence	TGTTGCAGCAGCAATAGAAAACTAATGCAGGGCCCAAGAAA
Motif Score	2.627720238
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	rmsk_637780; ENST00000448359.1; ENST00000436665.2
External Link	RMBase: m6A_site_488393
mod ID: M6ASITE046871		Click to Show/Hide the Full List
mod site	chr2:110376017-110376018:-		[2]
Sequence	TCCTTGAGCCTCCAGAAGGGACACAGCCCCGCCAGCACCTT
Motif Score	3.643047619
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000436665.2; rmsk_637780; ENST00000448359.1
External Link	RMBase: m6A_site_488394
mod ID: M6ASITE046872		Click to Show/Hide the Full List
mod site	chr2:110376048-110376049:-		[2]
Sequence	AGAAGCTAGAAAAGGCAGGGACCCGATTCTTTCCTTGAGCC
Motif Score	3.622404762
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000436665.2; ENST00000448359.1; rmsk_637780
External Link	RMBase: m6A_site_488395
mod ID: M6ASITE046873		Click to Show/Hide the Full List
mod site	chr2:110376088-110376089:-		[2]
Sequence	ATGGAGGAAGGAGGCCACAAACCTAGAAGCTGGAGCCCCTA
Motif Score	2.185083333
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000436665.2; ENST00000448359.1; rmsk_637780
External Link	RMBase: m6A_site_488396
mod ID: M6ASITE046874		Click to Show/Hide the Full List
mod site	chr2:110376507-110376508:-		[3]
Sequence	TGCACAAACCCAGGTCTGGAACTGGCTCCTTACCTTGGAAG
Motif Score	3.373380952
Cell/Tissue List	A549
Seq Type List	m6A-seq
Transcript ID List	rmsk_637781; ENST00000436665.2; ENST00000448359.1
External Link	RMBase: m6A_site_488397
mod ID: M6ASITE046875		Click to Show/Hide the Full List
mod site	chr2:110376520-110376521:-		[3]
Sequence	GGGAGCTTGGAGCTGCACAAACCCAGGTCTGGAACTGGCTC
Motif Score	2.185083333
Cell/Tissue List	A549
Seq Type List	m6A-seq
Transcript ID List	ENST00000448359.1; rmsk_637781; ENST00000436665.2
External Link	RMBase: m6A_site_488398
mod ID: M6ASITE046876		Click to Show/Hide the Full List
mod site	chr2:110376524-110376525:-		[4]
Sequence	ACGGGGGAGCTTGGAGCTGCACAAACCCAGGTCTGGAACTG
Motif Score	2.830589286
Cell/Tissue List	brain
Seq Type List	m6A-REF-seq
Transcript ID List	ENST00000436665.2; rmsk_637781; ENST00000448359.1
External Link	RMBase: m6A_site_488399
mod ID: M6ASITE046877		Click to Show/Hide the Full List
mod site	chr2:110377800-110377801:-		[2]
Sequence	CTGGCTCATTTGATGCCAAGACTGACCATCACCACCATACC
Motif Score	3.319380952
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000436665.2; ENST00000448359.1
External Link	RMBase: m6A_site_488400
mod ID: M6ASITE046878		Click to Show/Hide the Full List
mod site	chr2:110377821-110377822:-		[2]
Sequence	TTGAATAGCTGATGATATAAACTGGCTCATTTGATGCCAAG
Motif Score	2.627720238
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000448359.1; ENST00000436665.2
External Link	RMBase: m6A_site_488401
mod ID: M6ASITE046879		Click to Show/Hide the Full List
mod site	chr2:110382787-110382788:-		[2]
Sequence	TATGGATTTGCCTATTCTAGACCATTCATATAAATGAAGTC
Motif Score	2.876744048
Cell/Tissue List	HeLa; HEK293T; A549
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000448359.1; ENST00000436665.2
External Link	RMBase: m6A_site_488402
mod ID: M6ASITE046880		Click to Show/Hide the Full List
mod site	chr2:110382882-110382883:-		[2]
Sequence	CATTCATCACTCCAGAAGAAACTACTACCCATCAGCAGCCA
Motif Score	2.627720238
Cell/Tissue List	HeLa; HEK293T; A549; Huh7; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000448359.1; ENST00000436665.2
External Link	RMBase: m6A_site_488403
mod ID: M6ASITE046881		Click to Show/Hide the Full List
mod site	chr2:110382903-110382904:-		[2]
Sequence	TCCATCACCATCGTTTTAGAACATTCATCACTCCAGAAGAA
Motif Score	2.951386905
Cell/Tissue List	HeLa; HEK293T; brain; A549; Huh7; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq; m6A-REF-seq
Transcript ID List	ENST00000436665.2; ENST00000448359.1
External Link	RMBase: m6A_site_488404
mod ID: M6ASITE046882		Click to Show/Hide the Full List
mod site	chr2:110382993-110382994:-		[5]
Sequence	GTTTTATTGAGATATAATTTACATGCTATCCAGCCCATCTA
Motif Score	2.07285119
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000448359.1; ENST00000436665.2
External Link	RMBase: m6A_site_488405
mod ID: M6ASITE046883		Click to Show/Hide the Full List
mod site	chr2:110383219-110383220:-		[5]
Sequence	CAGCGAAGCTTCATGAATGCACACAGTCACGTCGCAGAAGT
Motif Score	2.830589286
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000436665.2; ENST00000448359.1
External Link	RMBase: m6A_site_488406
mod ID: M6ASITE046884		Click to Show/Hide the Full List
mod site	chr2:110383319-110383320:-		[5]
Sequence	GCACAGGCACCACCGAAGGCACACGGATCTCAGAGGGGCCG
Motif Score	2.830589286
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000436665.2
External Link	RMBase: m6A_site_488408
mod ID: M6ASITE046885		Click to Show/Hide the Full List
mod site	chr2:110383912-110383913:-		[5]
Sequence	CCCGGAAGAAAATCTCTCCCACACCACTGTAGTCAGAGAGG
Motif Score	2.053113095
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000436665.2
External Link	RMBase: m6A_site_488410
mod ID: M6ASITE046886		Click to Show/Hide the Full List
mod site	chr2:110384375-110384376:-		[2]
Sequence	CTTCTCCCCCGAGTGGATGAACATGTGCTTGGTGTCGTTTT
Motif Score	2.951386905
Cell/Tissue List	HeLa; hESC-HEK293T
Seq Type List	m6A-seq; MAZTER-seq
Transcript ID List	ENST00000436665.2
External Link	RMBase: m6A_site_488413
mod ID: M6ASITE046887		Click to Show/Hide the Full List
mod site	chr2:110384414-110384415:-		[5]
Sequence	CAGCGAGAAGGATCGCCATCACACGGCGCACTGGTGCGGCT
Motif Score	2.047297619
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000436665.2
External Link	RMBase: m6A_site_488414

Ref 1	URL: http://www.guidetopharmacology.org Nucleic Acids Res. 2015 Oct 12. pii: gkv1037. The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands. (Target id: 1811).
Ref 2	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.
Ref 3	Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites. Cell Rep. 2014 Jul 10;8(1):284-96. doi: 10.1016/j.celrep.2014.05.048. Epub 2014 Jun 26.
Ref 4	Single-base mapping of m(6)A by an antibody-independent method. Sci Adv. 2019 Jul 3;5(7):eaax0250. doi: 10.1126/sciadv.aax0250. eCollection 2019 Jul.
Ref 5	Deciphering the "m(6)A Code" via Antibody-Independent Quantitative Profiling. Cell. 2019 Jul 25;178(3):731-747.e16. doi: 10.1016/j.cell.2019.06.013. Epub 2019 Jun 27.

m6A Target Gene Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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