General Information of the m6A Target Gene (ID: M6ATAR01247)
Target Name long intergenic non-protein coding RNA 1234 (LINC01234)
Synonyms
onco-lncRNA-32; MBOP; MEK1-binding oncopeptide
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Gene Name LINC01234
Chromosomal Location 12q24.13
Gene ID 100506465
HGNC ID
HGNC:49757
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Non-coding RNA
m6A Regulator: Heterogeneous nuclear ribonucleoproteins A2/B1 (HNRNPA2B1)
In total 6 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05020
Epigenetic Regulator hsa-miR-106b-5p
Regulated Target Cryptochrome circadian regulator 2 (CRY2)
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
Crosstalk ID: M6ACROT05795
Epigenetic Regulator Long intergenic non-protein coding RNA 1234 (LINC01234)
Regulated Target hsa-mir-106b
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
Crosstalk ID: M6ACROT05797
Epigenetic Regulator Long intergenic non-protein coding RNA 1234 (LINC01234)
Regulated Target MIR17
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
Crosstalk ID: M6ACROT05798
Epigenetic Regulator Long intergenic non-protein coding RNA 1234 (LINC01234)
Regulated Target MIR362
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
Crosstalk ID: M6ACROT05799
Epigenetic Regulator Long intergenic non-protein coding RNA 1234 (LINC01234)
Regulated Target MIR374A
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
Crosstalk ID: M6ACROT05800
Epigenetic Regulator Long intergenic non-protein coding RNA 1234 (LINC01234)
Regulated Target hsa-mir-425
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01247)
long intergenic non-protein coding RNA 1234 (LINC01234)
N6-methyladenosine (m6A)
In total 40 m6A sequence/site(s) in this target gene
mod ID: M6ASITE015378 Click to Show/Hide the Full List
mod site chr12:113738008-113738009:- [2]
Sequence CCCCTTCTCTGCTACAGGGGACTCAAGAGCCAGCTCTCCTT
Motif Score 4.065041667
Cell/Tissue List A549
Seq Type List m6A-seq
Transcript ID List ENST00000550905.5; ENST00000551982.1
External Link RMBase: m6A_site_210611
mod ID: M6ASITE015379 Click to Show/Hide the Full List
mod site chr12:113744634-113744635:- [3]
Sequence GTTATAGCGGCAGAAAATGGACTAAGACGGCATTTTGCATA
Motif Score 4.065041667
Cell/Tissue List HeLa; A549
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000547963.1; rmsk_3909959; ENST00000551982.1; ENST00000550905.5
External Link RMBase: m6A_site_210612
mod ID: M6ASITE015380 Click to Show/Hide the Full List
mod site chr12:113744705-113744706:- [4]
Sequence TTGGACTTCCGGCCTCCAGAACTGAGAAATACATGTCTTTT
Motif Score 3.373380952
Cell/Tissue List HeLa; A549; HEK293T; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List rmsk_3909959; ENST00000550905.5; ENST00000547963.1; ENST00000551982.1
External Link RMBase: m6A_site_210613
mod ID: M6ASITE015381 Click to Show/Hide the Full List
mod site chr12:113744721-113744722:- [4]
Sequence TGCTGGCACCTTGCTATTGGACTTCCGGCCTCCAGAACTGA
Motif Score 4.065041667
Cell/Tissue List HeLa; A549; HEK293T; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000550905.5; ENST00000547963.1; rmsk_3909959; ENST00000551982.1
External Link RMBase: m6A_site_210614
mod ID: M6ASITE015382 Click to Show/Hide the Full List
mod site chr12:113744832-113744833:- [4]
Sequence TACCCTTATCGCAGTAGTGGACCCCCCTTTTCTCTTGCTGT
Motif Score 3.622404762
Cell/Tissue List HeLa; A549; HEK293T; hESCs; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List rmsk_3909959; ENST00000547963.1; ENST00000550905.5; ENST00000551982.1
External Link RMBase: m6A_site_210615
mod ID: M6ASITE015383 Click to Show/Hide the Full List
mod site chr12:113744876-113744877:- [4]
Sequence GAGATGATCAGGTCATGAGAACTCTGCCCTCGTGAATGGAT
Motif Score 3.373380952
Cell/Tissue List HeLa; A549; HEK293T; hESCs; HEK293A-TOA; TREX
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000547963.1; ENST00000550905.5; rmsk_3909959; ENST00000551982.1
External Link RMBase: m6A_site_210616
mod ID: M6ASITE015384 Click to Show/Hide the Full List
mod site chr12:113744903-113744904:- [4]
Sequence AACAGTGTTGCAAGGTGAGAACTTTAAGAGATGATCAGGTC
Motif Score 3.373380952
Cell/Tissue List HeLa; A549; HEK293T; hESCs; TREX
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List rmsk_3909959; ENST00000547963.1; ENST00000551982.1; ENST00000550905.5
External Link RMBase: m6A_site_210617
mod ID: M6ASITE015385 Click to Show/Hide the Full List
mod site chr12:113745041-113745042:- [5]
Sequence TCCAACACAAGCTTGCGTGAACAGATAATCATCACTACGAG
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T; A549
Seq Type List MAZTER-seq; MeRIP-seq; m6A-seq; m6A-CLIP/IP
Transcript ID List ENST00000551982.1; ENST00000547963.1; ENST00000550905.5
External Link RMBase: m6A_site_210618
mod ID: M6ASITE015386 Click to Show/Hide the Full List
mod site chr12:113745172-113745173:- [3]
Sequence TATCTATCCTAGCTGCCCAGACCCATGTGCCTTTGTTTTAT
Motif Score 2.876744048
Cell/Tissue List A549
Seq Type List MeRIP-seq
Transcript ID List ENST00000547963.1; ENST00000551982.1; ENST00000550905.5
External Link RMBase: m6A_site_210619
mod ID: M6ASITE015387 Click to Show/Hide the Full List
mod site chr12:113745343-113745344:- [4]
Sequence TCAGAACAGTGAAATGATAAACATCTGTTATTTTAAGGTAC
Motif Score 2.20572619
Cell/Tissue List HeLa; A549; HEK293T; hNPCs; hESCs; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List rmsk_3909960; ENST00000547963.1; ENST00000551982.1; ENST00000550905.5
External Link RMBase: m6A_site_210620
mod ID: M6ASITE015388 Click to Show/Hide the Full List
mod site chr12:113745358-113745359:- [4]
Sequence TTGGACTTGTGGCCTTCAGAACAGTGAAATGATAAACATCT
Motif Score 2.951386905
Cell/Tissue List HeLa; A549; HEK293T; hNPCs; hESCs; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List rmsk_3909960; ENST00000551982.1; ENST00000550905.5; ENST00000547963.1
External Link RMBase: m6A_site_210621
mod ID: M6ASITE015389 Click to Show/Hide the Full List
mod site chr12:113745374-113745375:- [4]
Sequence TGCCAACACCTTGATTTTGGACTTGTGGCCTTCAGAACAGT
Motif Score 4.065041667
Cell/Tissue List HeLa; A549; HEK293T; hNPCs; hESCs; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000550905.5; ENST00000547963.1; ENST00000551982.1; rmsk_3909960
External Link RMBase: m6A_site_210622
mod ID: M6ASITE015390 Click to Show/Hide the Full List
mod site chr12:113745389-113745390:- [5]
Sequence AGAAGGAATCAACTCTGCCAACACCTTGATTTTGGACTTGT
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T; A549
Seq Type List MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000551982.1; rmsk_3909960; ENST00000550905.5; ENST00000547963.1
External Link RMBase: m6A_site_210623
mod ID: M6ASITE015391 Click to Show/Hide the Full List
mod site chr12:113745432-113745433:- [4]
Sequence GAAAAGAGAGACAGCAGAGAACTGATTCTCTACTAGAGCCT
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; A549; HEK293T; hNPCs; hESCs; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000551982.1; rmsk_3909960; ENST00000547963.1; ENST00000550905.5
External Link RMBase: m6A_site_210624
mod ID: M6ASITE015392 Click to Show/Hide the Full List
mod site chr12:113745442-113745443:- [4]
Sequence AAAAGAAATTGAAAAGAGAGACAGCAGAGAACTGATTCTCT
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; A549; HEK293T; hNPCs; hESCs; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000551982.1; ENST00000547963.1; ENST00000550905.5; rmsk_3909960
External Link RMBase: m6A_site_210625
mod ID: M6ASITE015393 Click to Show/Hide the Full List
mod site chr12:113745546-113745547:- [4]
Sequence AAGCCACCACGATCTCCTGGACTTTGCAGTTACTTGAGTTC
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hNPCs; hESCs; TIME; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000551982.1; ENST00000550905.5; ENST00000547963.1; rmsk_3909961
External Link RMBase: m6A_site_210626
mod ID: M6ASITE015394 Click to Show/Hide the Full List
mod site chr12:113745736-113745737:- [4]
Sequence CATGCAGGGCTTTGCCTGGAACTATTCTGAAAGGGGCACTC
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hNPCs; hESCs; H1299; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000550905.5; ENST00000551982.1; ENST00000550223.5; rmsk_3909961; ENST00000547963.1
External Link RMBase: m6A_site_210627
mod ID: M6ASITE015395 Click to Show/Hide the Full List
mod site chr12:113745769-113745770:- [4]
Sequence GGACCTGTGACTCAAGCCAGACCAAGGGAGTGACATGCAGG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hNPCs; hESCs; H1299; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000550223.5; ENST00000547963.1; rmsk_3909961; ENST00000551982.1; ENST00000550905.5
External Link RMBase: m6A_site_210628
mod ID: M6ASITE015396 Click to Show/Hide the Full List
mod site chr12:113745787-113745788:- [4]
Sequence AGTGATTGGTTCAACTCTGGACCTGTGACTCAAGCCAGACC
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hNPCs; hESCs; H1299; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000550905.5; rmsk_3909961; ENST00000550223.5; ENST00000547963.1; ENST00000551982.1
External Link RMBase: m6A_site_210629
mod ID: M6ASITE015397 Click to Show/Hide the Full List
mod site chr12:113745821-113745822:- [4]
Sequence AGTGAAGGTCTCAAGCCTGGACAACCAAATGCACAGTGATT
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; A549; hNPCs; hESCs; H1299; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000551982.1; ENST00000550905.5; ENST00000550223.5; ENST00000547963.1
External Link RMBase: m6A_site_210630
mod ID: M6ASITE015398 Click to Show/Hide the Full List
mod site chr12:113745887-113745888:- [4]
Sequence CCTTTGTATAGAAACTTCAAACCATTTCCCTTTGAAGGCAC
Motif Score 2.185083333
Cell/Tissue List HeLa; HEK293T; A549; hNPCs; HEK293A-TOA; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000550905.5; ENST00000547963.1; ENST00000550223.5; ENST00000551982.1
External Link RMBase: m6A_site_210631
mod ID: M6ASITE015399 Click to Show/Hide the Full List
mod site chr12:113745894-113745895:- [4]
Sequence CCTTCCCCCTTTGTATAGAAACTTCAAACCATTTCCCTTTG
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; A549; HEK293A-TOA; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000550223.5; ENST00000551982.1; ENST00000547963.1; ENST00000550905.5
External Link RMBase: m6A_site_210632
mod ID: M6ASITE015400 Click to Show/Hide the Full List
mod site chr12:113746022-113746023:- [4]
Sequence GCTCTTGGAGAACACCCAGGACTCAGGGTCTCTGCACACAT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; H1B; HEK293A-TOA; TREX
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000550223.5; ENST00000550905.5; ENST00000547963.1; ENST00000551982.1
External Link RMBase: m6A_site_210633
mod ID: M6ASITE015401 Click to Show/Hide the Full List
mod site chr12:113746031-113746032:- [4]
Sequence TTAGCATGTGCTCTTGGAGAACACCCAGGACTCAGGGTCTC
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; A549; H1B; HEK293A-TOA; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000547963.1; ENST00000550905.5; ENST00000550223.5; ENST00000551982.1
External Link RMBase: m6A_site_210634
mod ID: M6ASITE015402 Click to Show/Hide the Full List
mod site chr12:113746130-113746131:- [4]
Sequence TTTTTATTCCCTGAAAAGAAACTCTTGGTGCTGAGTGGTCT
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; A549; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000551982.1; ENST00000547963.1; ENST00000550223.5; ENST00000550905.5
External Link RMBase: m6A_site_210635
mod ID: M6ASITE015403 Click to Show/Hide the Full List
mod site chr12:113746174-113746175:- [4]
Sequence TTATACTACTAAGGCAGTGGACATGATGGCCTCAAGTCTCA
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; A549; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000550223.5; ENST00000551982.1; rmsk_3909962; ENST00000550905.5; ENST00000547963.1
External Link RMBase: m6A_site_210636
mod ID: M6ASITE015404 Click to Show/Hide the Full List
mod site chr12:113746298-113746299:- [4]
Sequence AAGTGTGTGGGGGAATGAAGACCAGCCCAGGAATCTGAGAT
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; A549; HEK293T; U2OS; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000550223.5; ENST00000547963.1; ENST00000551982.1; rmsk_3909962; ENST00000550905.5
External Link RMBase: m6A_site_210637
mod ID: M6ASITE015405 Click to Show/Hide the Full List
mod site chr12:113746340-113746341:- [4]
Sequence AGGTAGCTACATCCCACAAAACAACCACCCATCTGACCATG
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; A549; HEK293T; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000550223.5; ENST00000550905.5; ENST00000551982.1; ENST00000547963.1
External Link RMBase: m6A_site_210638
mod ID: M6ASITE015406 Click to Show/Hide the Full List
mod site chr12:113751034-113751035:- [4]
Sequence AGCCTGGGCGACAGAGCAAGACTCTGAGAAAAAAAAAAAAA
Motif Score 3.319380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000547963.1; ENST00000550905.5; ENST00000550223.5; ENST00000551982.1; ENST00000510694.2; rmsk_3909980
External Link RMBase: m6A_site_210639
mod ID: M6ASITE015407 Click to Show/Hide the Full List
mod site chr12:113751672-113751673:- [4]
Sequence CCTGGCCCACAAAACCCAGAACAAATTAAAATGAGTGTTTT
Motif Score 2.951386905
Cell/Tissue List HeLa; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000510694.2; ENST00000550223.5; ENST00000551982.1; rmsk_3909983; ENST00000550905.5; ENST00000547963.1
External Link RMBase: m6A_site_210640
mod ID: M6ASITE015408 Click to Show/Hide the Full List
mod site chr12:113751679-113751680:- [4]
Sequence CCAAGTTCCTGGCCCACAAAACCCAGAACAAATTAAAATGA
Motif Score 2.185083333
Cell/Tissue List HeLa; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000547963.1; ENST00000551982.1; ENST00000550223.5; ENST00000550905.5; rmsk_3909983; ENST00000510694.2
External Link RMBase: m6A_site_210641
mod ID: M6ASITE015409 Click to Show/Hide the Full List
mod site chr12:113751719-113751720:- [4]
Sequence TGAGAGACCCTCAAGTGAGAACCGCCCAGCTGAGCCTTTCC
Motif Score 2.930744048
Cell/Tissue List HeLa; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000510694.2; rmsk_3909983; ENST00000550905.5; ENST00000550223.5; ENST00000551982.1; ENST00000547963.1
External Link RMBase: m6A_site_210642
mod ID: M6ASITE015410 Click to Show/Hide the Full List
mod site chr12:113751733-113751734:- [4]
Sequence GAACTGCAACCGCATGAGAGACCCTCAAGTGAGAACCGCCC
Motif Score 2.876744048
Cell/Tissue List HeLa; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000551982.1; ENST00000547963.1; ENST00000550223.5; rmsk_3909983; ENST00000550905.5; ENST00000510694.2
External Link RMBase: m6A_site_210643
mod ID: M6ASITE015411 Click to Show/Hide the Full List
mod site chr12:113751751-113751752:- [4]
Sequence CTGCCCCAACCAACATGTGAACTGCAACCGCATGAGAGACC
Motif Score 3.373380952
Cell/Tissue List HeLa; A549; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000547963.1; ENST00000550905.5; ENST00000510694.2; ENST00000551982.1; rmsk_3909983; ENST00000550223.5
External Link RMBase: m6A_site_210644
mod ID: M6ASITE015412 Click to Show/Hide the Full List
mod site chr12:113751803-113751804:- [4]
Sequence CCAGAAGGGAGCCATCTCAGACATCCAGCCCAGCTGAGCCT
Motif Score 2.897386905
Cell/Tissue List HeLa; A549; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List rmsk_3909983; ENST00000547963.1; ENST00000550905.5; ENST00000510694.2; ENST00000551982.1; ENST00000550223.5
External Link RMBase: m6A_site_210645
mod ID: M6ASITE015413 Click to Show/Hide the Full List
mod site chr12:113752137-113752138:- [4]
Sequence AATGAACATTCGGCCAAAAGACAAAAGGAAGGTATTGCTAG
Motif Score 2.897386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000547963.1; ENST00000550905.5; ENST00000510694.2; ENST00000550223.5; ENST00000551982.1
External Link RMBase: m6A_site_210646
mod ID: M6ASITE015414 Click to Show/Hide the Full List
mod site chr12:113752152-113752153:- [4]
Sequence AAAATAACCTACTTCAATGAACATTCGGCCAAAAGACAAAA
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000510694.2; ENST00000547963.1; ENST00000551982.1; ENST00000550905.5; ENST00000550223.5
External Link RMBase: m6A_site_210647
mod ID: M6ASITE015415 Click to Show/Hide the Full List
mod site chr12:113753434-113753435:- [4]
Sequence GGTGCTTCACTGGGAAATGAACCAGGTAGGCCTCTCTCTGA
Motif Score 2.930744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000550223.5; ENST00000547963.1; ENST00000510694.2; ENST00000550905.5; ENST00000551982.1
External Link RMBase: m6A_site_210648
mod ID: M6ASITE015416 Click to Show/Hide the Full List
mod site chr12:113767170-113767171:- [4]
Sequence CATTAGCTTGGAGGCAGAAGACAGACCTCCCTGACTGCTGA
Motif Score 2.897386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000550223.5; ENST00000510694.2; ENST00000550905.5; ENST00000547963.1; ENST00000551982.1
External Link RMBase: m6A_site_210649
mod ID: M6ASITE015417 Click to Show/Hide the Full List
mod site chr12:113773682-113773683:- [5]
Sequence CAATCGGAGCCAACCCAGGGACATTTTCCTGGAGCGGCTGG
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List rmsk_3910039; ENST00000547963.1
External Link RMBase: m6A_site_210650