General Information of the m6A Target Gene (ID: M6ATAR01244)
Target Name Stromal cell-derived factor 1 (CXCL12)
Synonyms
SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; 3-72; 3-67
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Gene Name CXCL12
Chromosomal Location 10q11.21
Family Intercrine alpha (chemokine CxC) family
Function
Chemoattractant active on T-lymphocytes and monocytes but not neutrophils. Activates the C-X-C chemokine receptor CXCR4 to induce a rapid and transient rise in the level of intracellular calcium ions and chemotaxis. SDF-1-beta(3-72) and SDF-1-alpha(3-67) show a reduced chemotactic activity. Binding to cell surface proteoglycans seems to inhibit formation of SDF-1-alpha(3-67) and thus to preserve activity on local sites. Also binds to atypical chemokine receptor ACKR3, which activates the beta-arrestin pathway and acts as a scavenger receptor for SDF-1. Binds to the allosteric site (site 2) of integrins and activates integrins ITGAV:ITGB3, ITGA4:ITGB1 and ITGA5:ITGB1 in a CXCR4-independent manner (PubMed:29301984). Acts as a positive regulator of monocyte migration and a negative regulator of monocyte adhesion via the LYN kinase. Stimulates migration of monocytes and T-lymphocytes through its receptors, CXCR4 and ACKR3, and decreases monocyte adherence to surfaces coated with ICAM-1, a ligand for beta-2 integrins. SDF1A/CXCR4 signaling axis inhibits beta-2 integrin LFA-1 mediated adhesion of monocytes to ICAM-1 through LYN kinase. Inhibits CXCR4-mediated infection by T-cell line-adapted HIV-1. Plays a protective role after myocardial infarction. Induces down-regulation and internalization of ACKR3 expressed in various cells. Has several critical functions during embryonic development; required for B-cell lymphopoiesis, myelopoiesis in bone marrow and heart ventricular septum formation. Stimulates the proliferation of bone marrow-derived B-cell progenitors in the presence of IL7 as well as growth of stromal cell-dependent pre-B-cells (By similarity).
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Gene ID 6387
Uniprot ID
SDF1_HUMAN
HGNC ID
HGNC:10672
KEGG ID
hsa:6387
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
RNA modification
m6A Regulator: Methyltransferase-like 3 (METTL3)
In total 2 item(s) under this m6A regulator
Crosstalk ID: M6ACROT00469
Epigenetic Regulator Interferon-inducible protein 4 (ADAR1)
Regulated Target MicroRNA 149 (MIR149)
Crosstalk relationship A-to-I → m6A
Crosstalk ID: M6ACROT00470
Epigenetic Regulator Methyltransferase-like protein 1 (METTL1)
Regulated Target MicroRNA 149 (MIR149)
Crosstalk relationship m7G → m6A
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01244)
Stromal cell-derived factor 1 (CXCL12)
N4-acetylcytidine (ac4C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: AC4SITE000141 Click to Show/Hide the Full List
mod site chr10:44375979-44375980:- [2]
Sequence AAAAGATAGGAAAAAAGAAGCGACAGAAGAAGAGAAAGGCT
Cell/Tissue List H1
Seq Type List ac4C-seq
Transcript ID List ENST00000395795.5; ENST00000374429.6; ENST00000395793.7; ENST00000374426.6
External Link RMBase: ac4C_site_205
Adenosine-to-Inosine editing (A-to-I)
In total 1 m6A sequence/site(s) in this target gene
mod ID: A2ISITE004080 Click to Show/Hide the Full List
mod site chr10:44377465-44377466:- [3]
Sequence GCATAAATGCGATCCACAGAAGGTCCTGGTGGTATTTGTAA
Transcript ID List ENST00000395795.5; ENST00000374429.6; ENST00000395793.7; ENST00000374426.6; ENST00000395794.2; ENST00000343575.10
External Link RMBase: RNA-editing_site_15618
N6-methyladenosine (m6A)
In total 32 m6A sequence/site(s) in this target gene
mod ID: M6ASITE096372 Click to Show/Hide the Full List
mod site chr10:44370543-44370544:- [4]
Sequence TTGAGTGCTCTGATCCCTCTACAGAGCTTCCCTGACTCATT
Motif Score 2.078666667
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000374429.6
External Link RMBase: m6A_site_99331
mod ID: M6ASITE096373 Click to Show/Hide the Full List
mod site chr10:44371982-44371983:- [5]
Sequence CAGGACATTTCTCTAAGAGAACAATGTGCTATGTGAAGAGT
Motif Score 2.951386905
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000374429.6
External Link RMBase: m6A_site_99332
mod ID: M6ASITE096374 Click to Show/Hide the Full List
mod site chr10:44371998-44371999:- [5]
Sequence CTTCGGGCCCTTCCCACAGGACATTTCTCTAAGAGAACAAT
Motif Score 3.643047619
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000374429.6
External Link RMBase: m6A_site_99333
mod ID: M6ASITE096375 Click to Show/Hide the Full List
mod site chr10:44372553-44372554:- [6]
Sequence ATGTCTTGTGTTACCTGAAAACACTGTGCACATCTGTGTCT
Motif Score 2.20572619
Cell/Tissue List hESCs; fibroblasts; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000374429.6
External Link RMBase: m6A_site_99334
mod ID: M6ASITE096376 Click to Show/Hide the Full List
mod site chr10:44372598-44372599:- [6]
Sequence GGACCAAAGCTTTCATGTAAACTGTGCACCAAGCAGGAAAT
Motif Score 2.627720238
Cell/Tissue List hESCs; fibroblasts; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000374429.6
External Link RMBase: m6A_site_99335
mod ID: M6ASITE096377 Click to Show/Hide the Full List
mod site chr10:44372616-44372617:- [6]
Sequence CCTGCAAAAGGACTCTCAGGACCAAAGCTTTCATGTAAACT
Motif Score 3.622404762
Cell/Tissue List hESCs; fibroblasts; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000374429.6
External Link RMBase: m6A_site_99336
mod ID: M6ASITE096378 Click to Show/Hide the Full List
mod site chr10:44372625-44372626:- [6]
Sequence CTCCATGGCCCTGCAAAAGGACTCTCAGGACCAAAGCTTTC
Motif Score 4.065041667
Cell/Tissue List hESCs; fibroblasts; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000374429.6; ENST00000395793.7
External Link RMBase: m6A_site_99337
mod ID: M6ASITE096379 Click to Show/Hide the Full List
mod site chr10:44372734-44372735:- [6]
Sequence TGAGGCCAGGGCAGAGTGAGACCCAGCCCTCATCCCGAGCA
Motif Score 2.876744048
Cell/Tissue List fibroblasts; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000395793.7; ENST00000374429.6
External Link RMBase: m6A_site_99338
mod ID: M6ASITE096380 Click to Show/Hide the Full List
mod site chr10:44377510-44377511:- [5]
Sequence GGTTTCAGGTTCCAATCAGAACTGTTGGCAAGGTGACATTT
Motif Score 3.373380952
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000395793.7; ENST00000374429.6; ENST00000343575.10; ENST00000395795.5; ENST00000374426.6; ENST00000395794.2
External Link RMBase: m6A_site_99339
mod ID: M6ASITE096381 Click to Show/Hide the Full List
mod site chr10:44377618-44377619:- [4]
Sequence TGTATGCCATGGAGGCACTAACAAACTCTGAGGTTTCCGAA
Motif Score 2.168095238
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000395794.2; ENST00000374429.6; ENST00000395795.5; ENST00000395793.7; ENST00000374426.6; ENST00000343575.10
External Link RMBase: m6A_site_99340
mod ID: M6ASITE096382 Click to Show/Hide the Full List
mod site chr10:44377983-44377984:- [5]
Sequence TACTGGGACTGTGCTCAGAGACCCCTCTCCCAGCTATTCCT
Motif Score 2.876744048
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000395794.2; ENST00000395793.7; ENST00000374426.6; ENST00000374429.6; ENST00000395795.5; ENST00000343575.10
External Link RMBase: m6A_site_99341
mod ID: M6ASITE096383 Click to Show/Hide the Full List
mod site chr10:44377996-44377997:- [5]
Sequence TAGAAGCCACTATTACTGGGACTGTGCTCAGAGACCCCTCT
Motif Score 4.065041667
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000395793.7; ENST00000343575.10; ENST00000395794.2; ENST00000374426.6; ENST00000374429.6; ENST00000395795.5
External Link RMBase: m6A_site_99342
mod ID: M6ASITE096384 Click to Show/Hide the Full List
mod site chr10:44378150-44378151:- [5]
Sequence AAAAAGTGTCCTTTCTTCAGACACTGAGGCTCCCGCAGCAG
Motif Score 2.897386905
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000374426.6; ENST00000343575.10; ENST00000395793.7; ENST00000395795.5; ENST00000395794.2; ENST00000374429.6
External Link RMBase: m6A_site_99343
mod ID: M6ASITE096385 Click to Show/Hide the Full List
mod site chr10:44378201-44378202:- [4]
Sequence CTCCCCTGGGGAGTCTGGGCACAGTCAGGTGGTGGCTTAAC
Motif Score 2.830589286
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000343575.10; ENST00000374426.6; ENST00000374429.6; ENST00000395794.2; ENST00000395795.5; ENST00000395793.7
External Link RMBase: m6A_site_99344
mod ID: M6ASITE096386 Click to Show/Hide the Full List
mod site chr10:44378343-44378344:- [4]
Sequence AGAAAGAAATTGTATTATCAACAGCATTTTCAAGCAGTTAG
Motif Score 2.173910714
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000374426.6; ENST00000395794.2; ENST00000374429.6; ENST00000395795.5; ENST00000343575.10; ENST00000395793.7
External Link RMBase: m6A_site_99345
mod ID: M6ASITE096387 Click to Show/Hide the Full List
mod site chr10:44378460-44378461:- [7]
Sequence TGAGGTTTGCCAGCATTTAGACCCTGCATTTATAGCATACG
Motif Score 2.876744048
Cell/Tissue List H1A; H1B; fibroblasts; HEK293A-TOA; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000395793.7; ENST00000374429.6; ENST00000395795.5; ENST00000374426.6; ENST00000395794.2; ENST00000343575.10
External Link RMBase: m6A_site_99346
mod ID: M6ASITE096388 Click to Show/Hide the Full List
mod site chr10:44378525-44378526:- [7]
Sequence AGGGGGCCTTAACCATGAGGACCAGGTGTGTGTGTGGGGTG
Motif Score 3.622404762
Cell/Tissue List HEK293T; H1A; H1B; hESCs; fibroblasts; HEK293A-TOA; MSC; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000395794.2; ENST00000374426.6; ENST00000395795.5; ENST00000395793.7; ENST00000374429.6; ENST00000343575.10
External Link RMBase: m6A_site_99347
mod ID: M6ASITE096389 Click to Show/Hide the Full List
mod site chr10:44378580-44378581:- [7]
Sequence CCCACTCGAGGAAAACTAAAACCTTGTGAGAGATGAAAGGG
Motif Score 2.185083333
Cell/Tissue List HEK293T; H1A; H1B; hESCs; fibroblasts; HEK293A-TOA; MSC; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000395795.5; ENST00000343575.10; ENST00000395794.2; ENST00000374429.6; ENST00000496375.1; ENST00000374426.6; ENST00000395793.7
External Link RMBase: m6A_site_99348
mod ID: M6ASITE096390 Click to Show/Hide the Full List
mod site chr10:44378586-44378587:- [7]
Sequence GCTAGACCCACTCGAGGAAAACTAAAACCTTGTGAGAGATG
Motif Score 2.627720238
Cell/Tissue List HEK293T; H1A; H1B; hESCs; fibroblasts; HEK293A-TOA; MSC; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000496375.1; ENST00000374426.6; ENST00000395795.5; ENST00000343575.10; ENST00000395793.7; ENST00000395794.2; ENST00000374429.6
External Link RMBase: m6A_site_99349
mod ID: M6ASITE096391 Click to Show/Hide the Full List
mod site chr10:44378601-44378602:- [7]
Sequence CAAAAAGGACTTTCCGCTAGACCCACTCGAGGAAAACTAAA
Motif Score 2.876744048
Cell/Tissue List HEK293T; H1A; H1B; hESCs; fibroblasts; HEK293A-TOA; MSC; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000395793.7; ENST00000395795.5; ENST00000374426.6; ENST00000496375.1; ENST00000374429.6; ENST00000395794.2; ENST00000343575.10
External Link RMBase: m6A_site_99350
mod ID: M6ASITE096392 Click to Show/Hide the Full List
mod site chr10:44378613-44378614:- [7]
Sequence AAGCACAACAGCCAAAAAGGACTTTCCGCTAGACCCACTCG
Motif Score 4.065041667
Cell/Tissue List HEK293T; H1A; H1B; hESCs; fibroblasts; HEK293A-TOA; MSC; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000395793.7; ENST00000374429.6; ENST00000395794.2; ENST00000343575.10; ENST00000395795.5; ENST00000374426.6; ENST00000496375.1
External Link RMBase: m6A_site_99351
mod ID: M6ASITE096393 Click to Show/Hide the Full List
mod site chr10:44378639-44378640:- [8]
Sequence GTACCTGGAGAAAGCTTTAAACAAGTAAGCACAACAGCCAA
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T; hESCs; fibroblasts; HEK293A-TOA; MSC; endometrial
Seq Type List MAZTER-seq; m6A-seq; MeRIP-seq
Transcript ID List ENST00000395795.5; ENST00000343575.10; ENST00000395793.7; ENST00000374429.6; ENST00000374426.6; ENST00000395794.2; ENST00000496375.1
External Link RMBase: m6A_site_99352
mod ID: M6ASITE096394 Click to Show/Hide the Full List
mod site chr10:44378698-44378699:- [8]
Sequence CGGCTGAAGAACAACAACAGACAAGTGTGCATTGACCCGAA
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T; hESCs; fibroblasts; HEK293A-TOA; endometrial
Seq Type List MAZTER-seq; m6A-seq
Transcript ID List ENST00000395794.2; ENST00000374426.6; ENST00000343575.10; ENST00000496375.1; ENST00000374429.6; ENST00000395795.5; ENST00000395793.7
External Link RMBase: m6A_site_99353
mod ID: M6ASITE096395 Click to Show/Hide the Full List
mod site chr10:44378708-44378709:- [8]
Sequence TCACAGAGCCCGGCTGAAGAACAACAACAGACAAGTGTGCA
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T; hESCs; fibroblasts; HEK293A-TOA; endometrial
Seq Type List MAZTER-seq; m6A-seq
Transcript ID List ENST00000395795.5; ENST00000374429.6; ENST00000374426.6; ENST00000343575.10; ENST00000395793.7; ENST00000395794.2; ENST00000496375.1
External Link RMBase: m6A_site_99354
mod ID: M6ASITE096396 Click to Show/Hide the Full List
mod site chr10:44380476-44380477:- [5]
Sequence CACAGCTGGATGCTGGAGAAACTATGGGCTTCACCAAGGTT
Motif Score 2.627720238
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000395795.5; ENST00000488591.1; ENST00000374426.6; ENST00000374429.6; ENST00000395793.7; ENST00000343575.10; ENST00000496375.1; ENST00000395794.2
External Link RMBase: m6A_site_99355
mod ID: M6ASITE096397 Click to Show/Hide the Full List
mod site chr10:44380744-44380745:- [5]
Sequence TGTGTAAGTCTTGAAATTGAACATCATCTAACGAACATAGT
Motif Score 2.951386905
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000374426.6; ENST00000395795.5; ENST00000496375.1; ENST00000343575.10; ENST00000374429.6; ENST00000395793.7; ENST00000488591.1; ENST00000395794.2
External Link RMBase: m6A_site_99356
mod ID: M6ASITE096398 Click to Show/Hide the Full List
mod site chr10:44380780-44380781:- [5]
Sequence CAAAATTCTCAACACTCCAAACTGTGCCCTTCAGATTGTGT
Motif Score 2.627720238
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000496375.1; ENST00000395794.2; ENST00000374429.6; ENST00000395795.5; ENST00000374426.6; ENST00000488591.1; ENST00000343575.10; ENST00000395793.7
External Link RMBase: m6A_site_99357
mod ID: M6ASITE096399 Click to Show/Hide the Full List
mod site chr10:44380789-44380790:- [8]
Sequence CAAGCATCTCAAAATTCTCAACACTCCAAACTGTGCCCTTC
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000374429.6; ENST00000395794.2; ENST00000488591.1; ENST00000374426.6; ENST00000395795.5; ENST00000343575.10; ENST00000395793.7; ENST00000496375.1
External Link RMBase: m6A_site_99358
mod ID: M6ASITE096400 Click to Show/Hide the Full List
mod site chr10:44386068-44386069:- [7]
Sequence CCGTGGGAAGAGTTTTCTGGACCCAGAAGGCAGACGCCAGT
Motif Score 3.622404762
Cell/Tissue List H1A; H1B
Seq Type List m6A-seq
Transcript ID List ENST00000496375.1
External Link RMBase: m6A_site_99359
mod ID: M6ASITE096401 Click to Show/Hide the Full List
mod site chr10:44386150-44386151:- [7]
Sequence CACCCTCCCTTCGCCACCGGACTGGGGCCATCTGGGATGTC
Motif Score 4.065041667
Cell/Tissue List H1A; H1B
Seq Type List m6A-seq
Transcript ID List ENST00000496375.1
External Link RMBase: m6A_site_99360
mod ID: M6ASITE096402 Click to Show/Hide the Full List
mod site chr10:44386261-44386262:- [7]
Sequence TGGACGCTGTGCTGGGAAGGACACAGAGAGGTGGCTGGGGC
Motif Score 3.643047619
Cell/Tissue List H1A; H1B
Seq Type List m6A-seq
Transcript ID List ENST00000496375.1
External Link RMBase: m6A_site_99361
mod ID: M6ASITE096403 Click to Show/Hide the Full List
mod site chr10:44386340-44386341:- [7]
Sequence ACGGCCAGGACTCCCCAGGGACAGGGACGTGTCCCCAGGGC
Motif Score 3.643047619
Cell/Tissue List H1B
Seq Type List m6A-seq
Transcript ID List ENST00000496375.1
External Link RMBase: m6A_site_99362