m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR01075)

Target Name	long intergenic non-protein coding RNA 641 (LINC00641)
Gene Name	LINC00641
Chromosomal Location	14q11.2
Gene ID	283624
HGNC ID	HGNC:27511

Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator

Non-coding RNA

m6A Regulator: YTH domain-containing protein 1 (YTHDC1)

Regulator Info

In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05767		Crosstalk Info
Epigenetic Regulator	Long intergenic non-protein coding RNA 641 (LINC00641)
Regulated Target	ELAV-like protein 1 (HuR/ELAVL1)
Crosstalk relationship	m6A → ncRNA
Disease	Lung cancer	Disease Info

RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01075)

long intergenic non-protein coding RNA 641 (LINC00641)

N6-methyladenosine (m6A)

In total 26 m6A sequence/site(s) in this target gene
mod ID: M6ASITE018560		Click to Show/Hide the Full List
mod site	chr14:21200485-21200486:-		[2]
Sequence	TTTATTTTGCCTGTTTTTCAACTTCAAATAAATGAAATAAT
Motif Score	2.595904762
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000555379.1; ENST00000555688.1
External Link	RMBase: m6A_site_238798
mod ID: M6ASITE018561		Click to Show/Hide the Full List
mod site	chr14:21200585-21200586:-		[2]
Sequence	AGAGTTGGAACATCACCAGTACTCCAGAAGCCCCATGCATG
Motif Score	3.278136905
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000555379.1; ENST00000555688.1
External Link	RMBase: m6A_site_238799
mod ID: M6ASITE018562		Click to Show/Hide the Full List
mod site	chr14:21200596-21200597:-		[3]
Sequence	GTATGAAATTAAGAGTTGGAACATCACCAGTACTCCAGAAG
Motif Score	2.951386905
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238800
mod ID: M6ASITE018563		Click to Show/Hide the Full List
mod site	chr14:21200841-21200842:-		[2]
Sequence	TTATACTAATTTATATTCTCACTATCTGTAAATGAACATTT
Motif Score	2.469291667
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000555379.1; ENST00000555688.1
External Link	RMBase: m6A_site_238801
mod ID: M6ASITE018564		Click to Show/Hide the Full List
mod site	chr14:21200999-21201000:-		[3]
Sequence	TTGGGATAATACTACTATGAACATTCCTGTACATGTCTTTT
Motif Score	2.951386905
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238802
mod ID: M6ASITE018565		Click to Show/Hide the Full List
mod site	chr14:21201068-21201069:-		[2]
Sequence	GCAATTCTGAGCTGTAATTGACTTTAATAAGCTCCAACAGC
Motif Score	3.28175
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238803
mod ID: M6ASITE018566		Click to Show/Hide the Full List
mod site	chr14:21201496-21201497:-		[4]
Sequence	AAGTAAACATGCCAGTTGAAACACCACTCTGATCAGGATGT
Motif Score	2.20572619
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000555379.1; ENST00000555688.1
External Link	RMBase: m6A_site_238804
mod ID: M6ASITE018567		Click to Show/Hide the Full List
mod site	chr14:21201510-21201511:-		[4]
Sequence	GATGAAGATTTACAAAGTAAACATGCCAGTTGAAACACCAC
Motif Score	2.20572619
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238805
mod ID: M6ASITE018568		Click to Show/Hide the Full List
mod site	chr14:21201552-21201553:-		[4]
Sequence	ACTTATATACTATAAAATGGACACATCTTAAGCATACAGCT
Motif Score	3.643047619
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238806
mod ID: M6ASITE018569		Click to Show/Hide the Full List
mod site	chr14:21202083-21202084:-		[3]
Sequence	AGCTTTCACTGTAATAGTTCACATTCCTCTCCTAGTGTCAG
Motif Score	2.047297619
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238807
mod ID: M6ASITE018570		Click to Show/Hide the Full List
mod site	chr14:21202178-21202179:-		[3]
Sequence	AAGAACTAACTATTCAACACACACCTAGAGGAGCGTTGTAA
Motif Score	2.084928571
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238808
mod ID: M6ASITE018571		Click to Show/Hide the Full List
mod site	chr14:21202344-21202345:-		[2]
Sequence	GAGCAGGGACCACATCTATTACTTGTGATTAATATATTCCT
Motif Score	2.494845238
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000555379.1; ENST00000555688.1; rmsk_4121819
External Link	RMBase: m6A_site_238809
mod ID: M6ASITE018572		Click to Show/Hide the Full List
mod site	chr14:21202353-21202354:-		[5]
Sequence	GAAACTCAAGAGCAGGGACCACATCTATTACTTGTGATTAA
Motif Score	2.053113095
Cell/Tissue List	brain
Seq Type List	m6A-REF-seq
Transcript ID List	rmsk_4121819; ENST00000555379.1; ENST00000555688.1
External Link	RMBase: m6A_site_238810
mod ID: M6ASITE018573		Click to Show/Hide the Full List
mod site	chr14:21202356-21202357:-		[6]
Sequence	AATGAAACTCAAGAGCAGGGACCACATCTATTACTTGTGAT
Motif Score	3.622404762
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1; rmsk_4121819
External Link	RMBase: m6A_site_238811
mod ID: M6ASITE018574		Click to Show/Hide the Full List
mod site	chr14:21202370-21202371:-		[6]
Sequence	TTTTAAAAAATTAGAATGAAACTCAAGAGCAGGGACCACAT
Motif Score	2.627720238
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1; rmsk_4121819
External Link	RMBase: m6A_site_238812
mod ID: M6ASITE018575		Click to Show/Hide the Full List
mod site	chr14:21202431-21202432:-		[5]
Sequence	AATCTCTTCTTCGTAGCACTACAGTCATACTCATTGATACG
Motif Score	2.078666667
Cell/Tissue List	brain
Seq Type List	m6A-REF-seq
Transcript ID List	rmsk_4121819; ENST00000555379.1; ENST00000555688.1
External Link	RMBase: m6A_site_238813
mod ID: M6ASITE018576		Click to Show/Hide the Full List
mod site	chr14:21202703-21202704:-		[2]
Sequence	TACTTGCCCTTAGGATAATGACAAAACTTTTTAACACAGTC
Motif Score	2.859755952
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000555379.1; rmsk_4121819; ENST00000555688.1
External Link	RMBase: m6A_site_238814
mod ID: M6ASITE018577		Click to Show/Hide the Full List
mod site	chr14:21202722-21202723:-		[2]
Sequence	TTAAAACCATTTCTGGCATTACTTGCCCTTAGGATAATGAC
Motif Score	2.494845238
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	rmsk_4121819; ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238815
mod ID: M6ASITE018578		Click to Show/Hide the Full List
mod site	chr14:21202799-21202800:-		[3]
Sequence	CTTTCCAATCACTTGTTCATACAACAGCCATATTGGGTTTT
Motif Score	2.110482143
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	rmsk_4121819; ENST00000555379.1; ENST00000555688.1
External Link	RMBase: m6A_site_238816
mod ID: M6ASITE018579		Click to Show/Hide the Full List
mod site	chr14:21202982-21202983:-		[3]
Sequence	TGTTTAGAAATAAAGATGGAACATATTTTATAGCTACTGTT
Motif Score	2.951386905
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000555379.1; ENST00000555688.1
External Link	RMBase: m6A_site_238817
mod ID: M6ASITE018580		Click to Show/Hide the Full List
mod site	chr14:21204426-21204427:-		[7]
Sequence	CCTGGGGGAAATTACCTCAAACCACAGGGTAGTCTGCTAAA
Motif Score	2.185083333
Cell/Tissue List	CD34
Seq Type List	m6A-seq
Transcript ID List	ENST00000555379.1; ENST00000555688.1
External Link	RMBase: m6A_site_238818
mod ID: M6ASITE018581		Click to Show/Hide the Full List
mod site	chr14:21204548-21204549:-		[7]
Sequence	CAGGCTTAACCTTTCTATGGACCATAATGTCTTGGTGTCTG
Motif Score	3.622404762
Cell/Tissue List	CD34
Seq Type List	m6A-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238819
mod ID: M6ASITE018582		Click to Show/Hide the Full List
mod site	chr14:21204776-21204777:-		[2]
Sequence	AGAAAGACTTGGTCTTTCCCACAGGGACATTAATGTGAAAG
Motif Score	2.053113095
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238820
mod ID: M6ASITE018583		Click to Show/Hide the Full List
mod site	chr14:21205479-21205480:-		[2]
Sequence	AGAGGAAATGGTGTCTTTGAACTGTAGTCTGTAGTCCTAGA
Motif Score	3.373380952
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000555688.1; ENST00000555379.1
External Link	RMBase: m6A_site_238821
mod ID: M6ASITE018584		Click to Show/Hide the Full List
mod site	chr14:21206800-21206801:-		[6]
Sequence	AGAAATAAAAGTTTGGAGAAACATGGCTCTGAAGCTCTGAC
Motif Score	2.20572619
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000555688.1
External Link	RMBase: m6A_site_238822
mod ID: M6ASITE018585		Click to Show/Hide the Full List
mod site	chr14:21206884-21206885:-		[6]
Sequence	ATTAGTAGGAAGGAGTTAGAACCCAAGATAAATGCAGATAG
Motif Score	2.930744048
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000555688.1
External Link	RMBase: m6A_site_238823

Ref 1	PPAR-gamma in ulcerative colitis: a novel target for intervention. Curr Drug Targets. 2013 Nov;14(12):1501-7. doi: 10.2174/13894501113149990162.
Ref 2	DART-seq: an antibody-free method for global m(6)A detection. Nat Methods. 2019 Dec;16(12):1275-1280. doi: 10.1038/s41592-019-0570-0. Epub 2019 Sep 23.
Ref 3	Deciphering the "m(6)A Code" via Antibody-Independent Quantitative Profiling. Cell. 2019 Jul 25;178(3):731-747.e16. doi: 10.1016/j.cell.2019.06.013. Epub 2019 Jun 27.
Ref 4	N6-Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection. Cell Host Microbe. 2016 Nov 9;20(5):654-665. doi: 10.1016/j.chom.2016.09.015. Epub 2016 Oct 20.
Ref 5	Single-base mapping of m(6)A by an antibody-independent method. Sci Adv. 2019 Jul 3;5(7):eaax0250. doi: 10.1126/sciadv.aax0250. eCollection 2019 Jul.
Ref 6	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.
Ref 7	Suppression of m(6)A reader Ythdf2 promotes hematopoietic stem cell expansion. Cell Res. 2018 Sep;28(9):904-917. doi: 10.1038/s41422-018-0072-0. Epub 2018 Jul 31.

m6A Target Gene Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

Visitor Map