m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR01041)
Target Name RNF32 divergent transcript (RNF32-DT)
Synonyms
MY040; C7orf13; chromosome 7 open reading frame 13
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Gene Name LINC01006
Chromosomal Location 7q36.3
Gene ID 100506380
Uniprot ID
R32DT_HUMAN
HGNC ID
HGNC:48971
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Non-coding RNA
m6A Regulator: Methyltransferase-like 3 (METTL3)
 Regulator Info 
In total 16 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05750
 Crosstalk Info 
Epigenetic Regulator RNF32 divergent transcript (RNF32-DT)
Regulated Target MicroRNA 2682 (MIR2682)
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05902
 Crosstalk Info 
Epigenetic Regulator RNF32 divergent transcript (RNF32-DT)
Regulated Target MicroRNA 34a (MIR34A)
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05903
 Crosstalk Info 
Epigenetic Regulator RNF32 divergent transcript (RNF32-DT)
Regulated Target MicroRNA 34b (MIR34B)
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05904
 Crosstalk Info 
Epigenetic Regulator RNF32 divergent transcript (RNF32-DT)
Regulated Target MicroRNA 34c (MIR34C)
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05905
 Crosstalk Info 
Epigenetic Regulator MicroRNA 2682 (MIR2682)
Regulated Target Myc proto-oncogene protein (MYC)
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05906
 Crosstalk Info 
Epigenetic Regulator hsa-miR-34a
Regulated Target Myc proto-oncogene protein (MYC)
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05907
 Crosstalk Info 
Epigenetic Regulator MicroRNA 34b (MIR34B)
Regulated Target Myc proto-oncogene protein (MYC)
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05908
 Crosstalk Info 
Epigenetic Regulator MicroRNA 34c (MIR34C)
Regulated Target Myc proto-oncogene protein (MYC)
Crosstalk relationship m6A → ncRNA
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05909
 Crosstalk Info 
Epigenetic Regulator RNF32 divergent transcript (RNF32-DT)
Regulated Target MicroRNA 2682 (MIR2682)
Crosstalk relationship ncRNA → m6A
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05910
 Crosstalk Info 
Epigenetic Regulator RNF32 divergent transcript (RNF32-DT)
Regulated Target MicroRNA 34a (MIR34A)
Crosstalk relationship ncRNA → m6A
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05911
 Crosstalk Info 
Epigenetic Regulator RNF32 divergent transcript (RNF32-DT)
Regulated Target MicroRNA 34b (MIR34B)
Crosstalk relationship ncRNA → m6A
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05912
 Crosstalk Info 
Epigenetic Regulator RNF32 divergent transcript (RNF32-DT)
Regulated Target MicroRNA 34c (MIR34C)
Crosstalk relationship ncRNA → m6A
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05913
 Crosstalk Info 
Epigenetic Regulator MicroRNA 2682 (MIR2682)
Regulated Target Myc proto-oncogene protein (MYC)
Crosstalk relationship ncRNA → m6A
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05914
 Crosstalk Info 
Epigenetic Regulator hsa-miR-34a
Regulated Target Myc proto-oncogene protein (MYC)
Crosstalk relationship ncRNA → m6A
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05915
 Crosstalk Info 
Epigenetic Regulator MicroRNA 34b (MIR34B)
Regulated Target Myc proto-oncogene protein (MYC)
Crosstalk relationship ncRNA → m6A
Disease Non-small cell lung cancer
 Disease Info 
Crosstalk ID: M6ACROT05916
 Crosstalk Info 
Epigenetic Regulator MicroRNA 34c (MIR34C)
Regulated Target Myc proto-oncogene protein (MYC)
Crosstalk relationship ncRNA → m6A
Disease Non-small cell lung cancer
 Disease Info 
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01041)
RNF32 divergent transcript (RNF32-DT)
5-methylcytidine (m5C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: M5CSITE004252 Click to Show/Hide the Full List
mod site chr7:156640474-156640475:-
Sequence GATCGCCTGGCGGGGGTGTTCGGGAGCCGCGGGCTGAAGCA
Cell/Tissue List testis
Seq Type List Bisulfite-seq
Transcript ID List ENST00000333319.6; ENST00000418309.1; ENST00000624071.1; ENST00000652322.1; ENST00000651649.1; ENST00000458645.5; ENST00000435354.1
External Link RMBase: m5C_site_40916
N6-methyladenosine (m6A)
In total 21 m6A sequence/site(s) in this target gene
mod ID: M6ASITE083533 Click to Show/Hide the Full List
mod site chr7:156472608-156472609:- [2]
Sequence TGACAGGCAAAGCACGCAGGACCAGGAGATGGCTTCGTTCC
Motif Score 3.622404762
Cell/Tissue List A549
Seq Type List m6A-seq
Transcript ID List ENST00000652322.1; ENST00000425712.1; ENST00000651649.1; ENST00000447933.5
External Link RMBase: m6A_site_784939
mod ID: M6ASITE083534 Click to Show/Hide the Full List
mod site chr7:156584403-156584404:- [3]
Sequence TTACTTACAAAACTGTACGAACCATTTTTAATTAAGATGGA
Motif Score 2.930744048
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000447933.5; ENST00000425712.1; ENST00000651649.1; ENST00000458645.5; ENST00000652322.1
External Link RMBase: m6A_site_784940
mod ID: M6ASITE083535 Click to Show/Hide the Full List
mod site chr7:156584412-156584413:- [3]
Sequence AGACAGACTTTACTTACAAAACTGTACGAACCATTTTTAAT
Motif Score 2.627720238
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000425712.1; ENST00000447933.5; ENST00000458645.5; ENST00000651649.1; ENST00000652322.1
External Link RMBase: m6A_site_784941
mod ID: M6ASITE083536 Click to Show/Hide the Full List
mod site chr7:156638861-156638862:- [4]
Sequence GAATGTAGAAACAGCAACAGACATGAAATGGCAGTTGTATT
Motif Score 2.897386905
Cell/Tissue List MT4
Seq Type List MeRIP-seq
Transcript ID List ENST00000652322.1; ENST00000333319.6; ENST00000651649.1; ENST00000458645.5; ENST00000418309.1
External Link RMBase: m6A_site_784942
mod ID: M6ASITE083537 Click to Show/Hide the Full List
mod site chr7:156638871-156638872:- [5]
Sequence AATTCTAACTGAATGTAGAAACAGCAACAGACATGAAATGG
Motif Score 2.20572619
Cell/Tissue List HeLa; A549; MT4; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000652322.1; ENST00000651649.1; ENST00000333319.6; ENST00000418309.1; ENST00000458645.5
External Link RMBase: m6A_site_784943
mod ID: M6ASITE083538 Click to Show/Hide the Full List
mod site chr7:156638929-156638930:- [5]
Sequence TAGGTAGGCCAACCAGGTGGACTCAGTATTTTTGTGGGTGC
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; GM12878; MT4; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000652322.1; ENST00000333319.6; ENST00000651649.1; ENST00000418309.1; ENST00000458645.5
External Link RMBase: m6A_site_784944
mod ID: M6ASITE083539 Click to Show/Hide the Full List
mod site chr7:156639002-156639003:- [5]
Sequence CGTATGATTAGCCTAAGCGAACCAGAAAATCCAGGCCCGTG
Motif Score 2.930744048
Cell/Tissue List HeLa; hESCs; GM12878; Huh7; HEK293A-TOA; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000418309.1; ENST00000333319.6; ENST00000458645.5; ENST00000651649.1; ENST00000652322.1
External Link RMBase: m6A_site_784945
mod ID: M6ASITE083540 Click to Show/Hide the Full List
mod site chr7:156639076-156639077:- [6]
Sequence GCTCCTTATTTGTAAAGGGGACATTAGCCACTCTCCAGCAA
Motif Score 3.643047619
Cell/Tissue List GM12878; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000458645.5; ENST00000333319.6; ENST00000652322.1; ENST00000418309.1; rmsk_2420559; ENST00000651649.1
External Link RMBase: m6A_site_784946
mod ID: M6ASITE083541 Click to Show/Hide the Full List
mod site chr7:156639103-156639104:- [6]
Sequence TGGCAAGCTCATCTTCCTAAACCATGAGCTCCTTATTTGTA
Motif Score 2.185083333
Cell/Tissue List GM12878; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000418309.1; ENST00000651649.1; ENST00000458645.5; ENST00000652322.1; rmsk_2420559; ENST00000333319.6
External Link RMBase: m6A_site_784947
mod ID: M6ASITE083542 Click to Show/Hide the Full List
mod site chr7:156639166-156639167:- [6]
Sequence CTTTGGGCTCAGATAAGTAGACTTAAGTTCAAATTTTGACT
Motif Score 3.319380952
Cell/Tissue List GM12878; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000418309.1; ENST00000333319.6; ENST00000458645.5; ENST00000651649.1; ENST00000652322.1; rmsk_2420559
External Link RMBase: m6A_site_784948
mod ID: M6ASITE083543 Click to Show/Hide the Full List
mod site chr7:156639187-156639188:- [6]
Sequence CAGCCATAAATGGTTGTAAGACTTTGGGCTCAGATAAGTAG
Motif Score 3.319380952
Cell/Tissue List GM12878; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000418309.1; ENST00000651649.1; rmsk_2420559; ENST00000458645.5; ENST00000652322.1; ENST00000333319.6
External Link RMBase: m6A_site_784949
mod ID: M6ASITE083544 Click to Show/Hide the Full List
mod site chr7:156639241-156639242:- [2]
Sequence AGGGTCTTTGCAGTCTTAGGACTCTTCCGTTCCGCGACGTA
Motif Score 4.065041667
Cell/Tissue List hNPCs; GM12878; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000458645.5; ENST00000333319.6; ENST00000418309.1; ENST00000652322.1; ENST00000651649.1
External Link RMBase: m6A_site_784950
mod ID: M6ASITE083545 Click to Show/Hide the Full List
mod site chr7:156639282-156639283:- [2]
Sequence GAAATTACCAACCAACTTAGACTGGATCTAGAAGAAAAGGA
Motif Score 3.319380952
Cell/Tissue List hNPCs; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000652322.1; ENST00000651649.1; ENST00000333319.6; ENST00000418309.1; ENST00000458645.5
External Link RMBase: m6A_site_784951
mod ID: M6ASITE083546 Click to Show/Hide the Full List
mod site chr7:156639326-156639327:- [2]
Sequence ATGCAAGTAATTTTTTTTAAACTTCCCTGAAAGCAGGGTCT
Motif Score 2.627720238
Cell/Tissue List hNPCs; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000458645.5; ENST00000651649.1; ENST00000333319.6; ENST00000418309.1; ENST00000652322.1
External Link RMBase: m6A_site_784952
mod ID: M6ASITE083547 Click to Show/Hide the Full List
mod site chr7:156639499-156639500:- [5]
Sequence GATTTTGTAGTTGTTTGAGAACTTAAGTCTGGTCCCTCACA
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; GM12878; A549; iSLK; MSC
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000458645.5; ENST00000435354.1; ENST00000651649.1; ENST00000652322.1; ENST00000418309.1; ENST00000333319.6
External Link RMBase: m6A_site_784953
mod ID: M6ASITE083548 Click to Show/Hide the Full List
mod site chr7:156639539-156639540:- [5]
Sequence CTGTCGTCCGGTGCCTGGAAACCATTGTATTTTTTGGTCTG
Motif Score 2.185083333
Cell/Tissue List HeLa; HEK293T; A549; H1B; GM12878; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000435354.1; ENST00000651649.1; ENST00000458645.5; ENST00000333319.6; ENST00000652322.1; ENST00000418309.1
External Link RMBase: m6A_site_784954
mod ID: M6ASITE083549 Click to Show/Hide the Full List
mod site chr7:156639669-156639670:- [5]
Sequence ATTGCGTCTTGGCCCCTGGAACCCTCCCTCTGTATCCTCTG
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T; A549; H1A; H1B; hESCs; GM12878; H1299; MM6; Jurkat; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000333319.6; ENST00000418309.1; ENST00000652322.1; ENST00000435354.1; ENST00000651649.1; ENST00000458645.5
External Link RMBase: m6A_site_784955
mod ID: M6ASITE083550 Click to Show/Hide the Full List
mod site chr7:156639722-156639723:- [5]
Sequence CTCGAGAAGGCCACCCCAGGACTCCAGCTCTCCCCGGAAGG
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; H1A; H1B; hESCs; GM12878; H1299; MM6; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000333319.6; ENST00000651649.1; ENST00000458645.5; ENST00000435354.1; ENST00000652322.1; ENST00000418309.1
External Link RMBase: m6A_site_784956
mod ID: M6ASITE083551 Click to Show/Hide the Full List
mod site chr7:156639743-156639744:- [5]
Sequence GCACAGACCTGCTCGGGAAGACTCGAGAAGGCCACCCCAGG
Motif Score 3.319380952
Cell/Tissue List HeLa; HEK293T; A549; H1A; H1B; hESCs; fibroblasts; GM12878; H1299; MM6; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000458645.5; ENST00000652322.1; ENST00000333319.6; ENST00000435354.1; ENST00000418309.1; ENST00000651649.1
External Link RMBase: m6A_site_784957
mod ID: M6ASITE083552 Click to Show/Hide the Full List
mod site chr7:156639757-156639758:- [5]
Sequence GATGTTTCCTCGCTGCACAGACCTGCTCGGGAAGACTCGAG
Motif Score 2.876744048
Cell/Tissue List HeLa; HEK293T; A549; H1A; H1B; hESCs; fibroblasts; GM12878; H1299; MM6; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000435354.1; ENST00000333319.6; ENST00000418309.1; ENST00000458645.5; ENST00000652322.1; ENST00000651649.1
External Link RMBase: m6A_site_784958
mod ID: M6ASITE083553 Click to Show/Hide the Full List
mod site chr7:156639841-156639842:- [5]
Sequence AGGGGCTGTCGCGAGCTAGAACTCTTCCCCGCCCCTGTGAG
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; A549; H1A; H1B; hESCs; fibroblasts; GM12878; Jurkat; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000651649.1; ENST00000333319.6; ENST00000652322.1; ENST00000458645.5; ENST00000418309.1; ENST00000435354.1
External Link RMBase: m6A_site_784959