m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR00806)

Target Name	BACE1 antisense RNA (BACE1-AS)
Synonyms	FJ573250; NCRNA00177; BACE1-AS1; non-protein coding RNA 177; BACE1AS; BACE1 antisense RNA (non-protein coding) Click to Show/Hide
Gene Name	BACE1-AS
Chromosomal Location	11q23.3
Gene ID	100379571
HGNC ID	HGNC:37125

Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator

Non-coding RNA

m6A Regulator: Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2)

Regulator Info

In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05641		Crosstalk Info
Epigenetic Regulator	BACE1 antisense RNA (BACE1-AS)
Regulated Target	hsa-miR-214-3p
Crosstalk relationship	m6A → ncRNA
Disease	Colorectal cancer	Disease Info

RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00806)

BACE1 antisense RNA (BACE1-AS)

N6-methyladenosine (m6A)

In total 30 m6A sequence/site(s) in this target gene
mod ID: M6ASITE008769		Click to Show/Hide the Full List
mod site	chr11:117288689-117288690:+		[2]
Sequence	AAAGGGTGGTTCAGATAGAGACAATGAAATTAATATGGCAG
Motif Score	2.897386905
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165064
mod ID: M6ASITE008770		Click to Show/Hide the Full List
mod site	chr11:117288730-117288731:+		[2]
Sequence	AAATTCATGTGTTAAGTGGAACTTCTTAGTGGGCACTTCAT
Motif Score	3.373380952
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165065
mod ID: M6ASITE008771		Click to Show/Hide the Full List
mod site	chr11:117288843-117288844:+		[3]
Sequence	CAGAAAAGAAAACATTGAAAACAACACCCATCTTCTGAGAT
Motif Score	2.20572619
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165066
mod ID: M6ASITE008772		Click to Show/Hide the Full List
mod site	chr11:117288893-117288894:+		[2]
Sequence	TCTTGGAGATGAGGTCTAAAACTAGGACTGGTGAGTGGTTG
Motif Score	2.627720238
Cell/Tissue List	HeLa; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165068
mod ID: M6ASITE008773		Click to Show/Hide the Full List
mod site	chr11:117288899-117288900:+		[2]
Sequence	AGATGAGGTCTAAAACTAGGACTGGTGAGTGGTTGTGTTTC
Motif Score	4.065041667
Cell/Tissue List	HeLa; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165069
mod ID: M6ASITE008774		Click to Show/Hide the Full List
mod site	chr11:117288960-117288961:+		[4]
Sequence	CCACTATTCCCTGTCTTTGTACTCCCTCTCCTTCTCCTCTT
Motif Score	3.278136905
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165072
mod ID: M6ASITE008775		Click to Show/Hide the Full List
mod site	chr11:117289099-117289100:+		[2]
Sequence	GTCTCTAAAGCAAATAGCAAACTGTGCATCCTCTCCTACTG
Motif Score	2.627720238
Cell/Tissue List	HeLa; HEK293T; hNPCs; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; MSC; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165079
mod ID: M6ASITE008776		Click to Show/Hide the Full List
mod site	chr11:117289138-117289139:+		[5]
Sequence	TGACTTTGGCCAGCAGGGAAACAAGCTTGGTCTCTTCTCTG
Motif Score	2.20572619
Cell/Tissue List	HEK293T; HeLa; fibroblasts; A549; Huh7; HEK293A-TOA; iSLK; MSC; TREX
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165080
mod ID: M6ASITE008777		Click to Show/Hide the Full List
mod site	chr11:117289175-117289176:+		[2]
Sequence	TCTGCCAGGGTACCACAGGGACACACGCCAAGGTAACCTGC
Motif Score	3.643047619
Cell/Tissue List	HeLa; HEK293T; A549; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165082
mod ID: M6ASITE008778		Click to Show/Hide the Full List
mod site	chr11:117289218-117289219:+		[2]
Sequence	GTGATGCCAGTACTTCTGAAACTAAGAAAAGAAGAATACTT
Motif Score	2.627720238
Cell/Tissue List	HeLa; HEK293T; A549; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165084
mod ID: M6ASITE008779		Click to Show/Hide the Full List
mod site	chr11:117289267-117289268:+		[2]
Sequence	AGAATTTAAAGGAATGGTGGACAAAGGTTCAGGGCTGAAGT
Motif Score	3.643047619
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1B; hNPCs; fibroblasts; Huh7; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165085
mod ID: M6ASITE008780		Click to Show/Hide the Full List
mod site	chr11:117289396-117289397:+		[2]
Sequence	CTACAGGTACAGTCCCTGGAACCCACCTTGCCAGCCTTTTC
Motif Score	2.930744048
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; fibroblasts; MM6; Huh7; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165090
mod ID: M6ASITE008781		Click to Show/Hide the Full List
mod site	chr11:117289514-117289515:+		[2]
Sequence	CCTACTTGTGACCAAAGTGAACCACGGAGGTGTGGTCCAGG
Motif Score	2.930744048
Cell/Tissue List	HeLa; HepG2; HEK293T; H1A; H1B; fibroblasts; A549; Huh7; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165093
mod ID: M6ASITE008782		Click to Show/Hide the Full List
mod site	chr11:117289795-117289796:+		[2]
Sequence	TTCCACCGCTGCCGTCCTGAACTCATCGTGCACTGGGGAGA
Motif Score	3.373380952
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165099
mod ID: M6ASITE008783		Click to Show/Hide the Full List
mod site	chr11:117289832-117289833:+		[2]
Sequence	GAGAGGGCAAATGTGAATGGACAGCTCTCATTGTCATAGAG
Motif Score	3.643047619
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000649580.1; rmsk_3668902
External Link	RMBase: m6A_site_165100
mod ID: M6ASITE008784		Click to Show/Hide the Full List
mod site	chr11:117290604-117290605:+		[2]
Sequence	GGATGACTGTGAGATGGCAAACTTGTAACAGTCGTCTTGGG
Motif Score	2.627720238
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000649580.1
External Link	RMBase: m6A_site_165101
mod ID: M6ASITE008785		Click to Show/Hide the Full List
mod site	chr11:117291749-117291750:+		[2]
Sequence	GGATTTGACTGCAGCTTCAAACACTTTCTTGGGCAAACGAA
Motif Score	2.20572619
Cell/Tissue List	HeLa; brain
Seq Type List	m6A-seq; m6A-REF-seq
Transcript ID List	ENST00000614401.1; ENST00000649580.1
External Link	RMBase: m6A_site_165103
mod ID: M6ASITE008786		Click to Show/Hide the Full List
mod site	chr11:117291790-117291791:+		[6]
Sequence	GGTTGGTGGTGCCACTGTCCACAATGCTCTTGTCATAGTTG
Motif Score	2.053113095
Cell/Tissue List	brain
Seq Type List	m6A-REF-seq
Transcript ID List	ENST00000614401.1; ENST00000649580.1
External Link	RMBase: m6A_site_165104
mod ID: M6ASITE008787		Click to Show/Hide the Full List
mod site	chr11:117292291-117292292:+		[2]
Sequence	CCTCTGCCTCCTGGATTCAAACCATTCTTTTGCCTCAGCCT
Motif Score	2.185083333
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000614401.1; ENST00000649580.1
External Link	RMBase: m6A_site_165105
mod ID: M6ASITE008788		Click to Show/Hide the Full List
mod site	chr11:117292492-117292493:+		[4]
Sequence	CGCTTTTAACTTTTCTTAGTACATTTATATCTATTCTAATT
Motif Score	2.856142857
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000614401.1; ENST00000649580.1
External Link	RMBase: m6A_site_165106
mod ID: M6ASITE008789		Click to Show/Hide the Full List
mod site	chr11:117292519-117292520:+		[4]
Sequence	TATCTATTCTAATTTAACATACATAAGAATCTAGGGAAGGA
Motif Score	2.110482143
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000649580.1; ENST00000614401.1
External Link	RMBase: m6A_site_165107
mod ID: M6ASITE008790		Click to Show/Hide the Full List
mod site	chr11:117292595-117292596:+		[4]
Sequence	TGCCAACCACAGAGATAAACACTTTACACATTATCTCTGAT
Motif Score	2.506922619
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000614401.1; ENST00000649580.1
External Link	RMBase: m6A_site_165108
mod ID: M6ASITE008791		Click to Show/Hide the Full List
mod site	chr11:117292600-117292601:+		[4]
Sequence	ACCACAGAGATAAACACTTTACACATTATCTCTGATATTCT
Motif Score	2.07285119
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000649580.1; ENST00000614401.1
External Link	RMBase: m6A_site_165109
mod ID: M6ASITE008792		Click to Show/Hide the Full List
mod site	chr11:117292663-117292664:+		[4]
Sequence	TTGCAGATAAGGAAACTGAGACACAGAATAGTAACTGGCCT
Motif Score	2.897386905
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000649580.1; ENST00000614401.1
External Link	RMBase: m6A_site_165110
mod ID: M6ASITE008793		Click to Show/Hide the Full List
mod site	chr11:117292825-117292826:+		[4]
Sequence	AGGCAGTGACTAGAGTCCAGACATCAGAACTAGTTCCATGT
Motif Score	2.897386905
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000614401.1; ENST00000649580.1; ENST00000618857.1
External Link	RMBase: m6A_site_165111
mod ID: M6ASITE008794		Click to Show/Hide the Full List
mod site	chr11:117292878-117292879:+		[3]
Sequence	TACCAGTCCCTAGGCCCCAAACCGCAGATCCTGCTGTGTGA
Motif Score	2.185083333
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000614401.1; ENST00000618857.1; ENST00000649580.1
External Link	RMBase: m6A_site_165112
mod ID: M6ASITE008795		Click to Show/Hide the Full List
mod site	chr11:117292976-117292977:+		[4]
Sequence	ACCTCTGCCTCATCCTCCCAACATGATAACCAGAGTCTTCC
Motif Score	2.173910714
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000618857.1; ENST00000649580.1; ENST00000614401.1
External Link	RMBase: m6A_site_165113
mod ID: M6ASITE008796		Click to Show/Hide the Full List
mod site	chr11:117293449-117293450:+		[3]
Sequence	ATAAAGTTATTTAAATCTAAACTGCCACAATAAATGTTGAA
Motif Score	2.627720238
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000618857.1; ENST00000649580.1
External Link	RMBase: m6A_site_165115
mod ID: M6ASITE008797		Click to Show/Hide the Full List
mod site	chr11:117293522-117293523:+		[3]
Sequence	TTTTCTCTGCTTATTGGAGAACCATTCACCATTGTTCTAAT
Motif Score	2.930744048
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000618857.1
External Link	RMBase: m6A_site_165116
mod ID: M6ASITE008798		Click to Show/Hide the Full List
mod site	chr11:117293557-117293558:+		[3]
Sequence	TCTAATTAATTAATAAATAGACAAACTTCTTATATCTCTGC
Motif Score	2.897386905
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000618857.1
External Link	RMBase: m6A_site_165117

Ref 1	Monoclonal antibodies to target epidermal growth factor receptor-positive tumors: a new paradigm for cancer therapy. Cancer. 2002 Mar 1;94(5):1593-611. doi: 10.1002/cncr.10372.
Ref 2	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.
Ref 3	N6-Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection. Cell Host Microbe. 2016 Nov 9;20(5):654-665. doi: 10.1016/j.chom.2016.09.015. Epub 2016 Oct 20.
Ref 4	DART-seq: an antibody-free method for global m(6)A detection. Nat Methods. 2019 Dec;16(12):1275-1280. doi: 10.1038/s41592-019-0570-0. Epub 2019 Sep 23.
Ref 5	Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell. 2012 Jun 22;149(7):1635-46. doi: 10.1016/j.cell.2012.05.003. Epub 2012 May 17.
Ref 6	Single-base mapping of m(6)A by an antibody-independent method. Sci Adv. 2019 Jul 3;5(7):eaax0250. doi: 10.1126/sciadv.aax0250. eCollection 2019 Jul.

m6A Target Gene Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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