m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR00610)
Target Name Suppressor of cytokine signaling 3 (SOCS3)
Synonyms
SOCS-3; Cytokine-inducible SH2 protein 3; CIS-3; STAT-induced STAT inhibitor 3; SSI-3
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Gene Name SOCS3
Chromosomal Location 17q25.3
Function
SOCS family proteins form part of a classical negative feedback system that regulates cytokine signal transduction. SOCS3 is involved in negative regulation of cytokines that signal through the JAK/STAT pathway. Inhibits cytokine signal transduction by binding to tyrosine kinase receptors including IL6ST/gp130, LIF, erythropoietin, insulin, IL12, GCSF and leptin receptors. Binding to JAK2 inhibits its kinase activity and regulates IL6 signaling. Suppresses fetal liver erythropoiesis. Regulates onset and maintenance of allergic responses mediated by T-helper type 2 cells (By similarity). Probable substrate recognition component of a SCF-like ECS (Elongin BC-CUL2/5-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
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Gene ID 9021
Uniprot ID
SOCS3_HUMAN
HGNC ID
HGNC:19391
KEGG ID
hsa:9021
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
SOCS3 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
YTH domain-containing family protein 2 (YTHDF2) [READER]
 Regulator Info 
Representative RNA-seq result indicating the expression of this target gene regulated by YTHDF2
Cell Line mouse embryonic stem cells Mus musculus
Treatment: shYthdf2 embryonic stem cells
Control: shLuc embryonic stem cells
 GSE156437
Regulation
logFC: -1.05E+00
p-value: 3.86E-03
More Results Click to View More RNA-seq Results
Representative RIP-seq result supporting the interaction between SOCS3 and the regulator
Cell Line Hela Homo sapiens
Regulation logFC: 1.46E+00 GSE49339
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary ALKBH5 inactivated STAT3 pathway by increasing Suppressor of cytokine signaling 3 (SOCS3) expression via an m6A-YTHDF2-dependent manner.Reducing m6A mRNA levels in human osteosarcoma cells through ALKBH5 up-regulation lead to cell proliferation inhibition, cell apoptosis and cycle arrest.
Target Regulation Down regulation
Responsed Disease Osteosarcoma ICD-11: 2B51
 Disease Info 
Pathway Response JAK-STAT signaling pathway hsa04630
In-vitro Model U2OS Osteosarcoma Homo sapiens CVCL_0042
OS3 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F866
OS2 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F865
OS1 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F864
KHOS/NP Osteosarcoma Homo sapiens CVCL_2546
RNA demethylase ALKBH5 (ALKBH5) [ERASER]
 Regulator Info 
Representative RNA-seq result indicating the expression of this target gene regulated by ALKBH5
Cell Line RPMI-8226 cell line Homo sapiens
Treatment: shALKBH5 RPMI8226 cells
Control: shNC RPMI8226 cells
 GSE180214
Regulation
logFC: -7.50E-01
p-value: 1.38E-03
More Results Click to View More RNA-seq Results
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary ALKBH5 inactivated STAT3 pathway by increasing Suppressor of cytokine signaling 3 (SOCS3) expression via an m6A-YTHDF2-dependent manner. Reducing m6A mRNA levels in human osteosarcoma cells through ALKBH5 up-regulation lead to cell proliferation inhibition, cell apoptosis and cycle arrest.
Target Regulation Down regulation
Responsed Disease Osteosarcoma ICD-11: 2B51
 Disease Info 
Pathway Response JAK-STAT signaling pathway hsa04630
In-vitro Model U2OS Osteosarcoma Homo sapiens CVCL_0042
OS3 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F866
OS2 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F865
OS1 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F864
KHOS/NP Osteosarcoma Homo sapiens CVCL_2546
Osteosarcoma [ICD-11: 2B51]
 Disease Info 
In total 2 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary ALKBH5 inactivated STAT3 pathway by increasing Suppressor of cytokine signaling 3 (SOCS3) expression via an m6A-YTHDF2-dependent manner. Reducing m6A mRNA levels in human osteosarcoma cells through ALKBH5 up-regulation lead to cell proliferation inhibition, cell apoptosis and cycle arrest.
Responsed Disease Osteosarcoma [ICD-11: 2B51]
Target Regulator RNA demethylase ALKBH5 (ALKBH5) ERASER
 Regulator Info 
Target Regulation Down regulation
Pathway Response JAK-STAT signaling pathway hsa04630
In-vitro Model U2OS Osteosarcoma Homo sapiens CVCL_0042
OS3 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F866
OS2 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F865
OS1 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F864
KHOS/NP Osteosarcoma Homo sapiens CVCL_2546
Experiment 2 Reporting the m6A-centered Disease Response [1]
Response Summary ALKBH5 inactivated STAT3 pathway by increasing Suppressor of cytokine signaling 3 (SOCS3) expression via an m6A-YTHDF2-dependent manner.Reducing m6A mRNA levels in human osteosarcoma cells through ALKBH5 up-regulation lead to cell proliferation inhibition, cell apoptosis and cycle arrest.
Responsed Disease Osteosarcoma [ICD-11: 2B51]
Target Regulator YTH domain-containing family protein 2 (YTHDF2) READER
 Regulator Info 
Target Regulation Down regulation
Pathway Response JAK-STAT signaling pathway hsa04630
In-vitro Model U2OS Osteosarcoma Homo sapiens CVCL_0042
OS3 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F866
OS2 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F865
OS1 [Human osteosarcoma] Osteosarcoma Homo sapiens CVCL_F864
KHOS/NP Osteosarcoma Homo sapiens CVCL_2546
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
DNA modification
m6A Regulator: Fat mass and obesity-associated protein (FTO)
 Regulator Info 
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT02052
 Crosstalk Info 
Epigenetic Regulator DNA (cytosine-5)-methyltransferase 1 (DNMT1)
Regulated Target FTO alpha-ketoglutarate dependent dioxygenase (FTO)
Crosstalk relationship DNA modification → m6A
Disease Ossification of spinal ligaments
 Disease Info 
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00610)
Suppressor of cytokine signaling 3 (SOCS3)
N6-methyladenosine (m6A)
In total 42 m6A sequence/site(s) in this target gene
mod ID: M6ASITE035644 Click to Show/Hide the Full List
mod site chr17:78356822-78356823:- [9]
Sequence TATTTATATTCAGAAAAGAAACATTTCAGTAATTTATAATA
Motif Score 2.20572619
Cell/Tissue List HeLa; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385301
mod ID: M6ASITE035645 Click to Show/Hide the Full List
mod site chr17:78356858-78356859:- [9]
Sequence AAAATCCCAATCCAAGTCAAACTTTGCACATATTTATATTT
Motif Score 2.627720238
Cell/Tissue List HeLa; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385302
mod ID: M6ASITE035646 Click to Show/Hide the Full List
mod site chr17:78356885-78356886:- [9]
Sequence TATTAGGAGATGCTTGAAGAACTCAACAAAATCCCAATCCA
Motif Score 3.373380952
Cell/Tissue List HeLa; A549; CD8T; Huh7
Seq Type List m6A-seq; m6A-CLIP/IP; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385303
mod ID: M6ASITE035647 Click to Show/Hide the Full List
mod site chr17:78357059-78357060:- [9]
Sequence TGTGTCAGGTATTGGGCTGGACAGGGCAGTTGTGTGTTGGG
Motif Score 3.643047619
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385304
mod ID: M6ASITE035648 Click to Show/Hide the Full List
mod site chr17:78357096-78357097:- [9]
Sequence TTGTGGGGGGGGGCAACTAAACAAACACAAAGTATTCTGTG
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385305
mod ID: M6ASITE035649 Click to Show/Hide the Full List
mod site chr17:78357148-78357149:- [9]
Sequence CAGCGATGGAATTACCTGGAACAGTTTTTTGTTTTTGTTTT
Motif Score 2.951386905
Cell/Tissue List HeLa; A549; HepG2; U2OS; H1B; H1299; MM6; Huh7; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385306
mod ID: M6ASITE035650 Click to Show/Hide the Full List
mod site chr17:78357235-78357236:- [9]
Sequence GAGGTCATTGGAGAGGCTGGACTGCTGCCACCCCGGGTGCT
Motif Score 4.065041667
Cell/Tissue List HeLa; A549; HepG2; U2OS; H1B; H1299; MM6; Huh7; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385307
mod ID: M6ASITE035651 Click to Show/Hide the Full List
mod site chr17:78357398-78357399:- [9]
Sequence AGTGGGGAGGGGGGGCGGAAACCCATGCCTCCCAGCTGAGC
Motif Score 2.185083333
Cell/Tissue List HeLa; A549; U2OS; H1A; H1B; MM6; Huh7; GSC-11; HEK293A-TOA; iSLK; MSC; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385308
mod ID: M6ASITE035652 Click to Show/Hide the Full List
mod site chr17:78357456-78357457:- [9]
Sequence ATGGGTGGAGAGGCTGAGGGACTCACTGGAGGGCACCAAGC
Motif Score 4.065041667
Cell/Tissue List HeLa; A549; U2OS; H1A; H1B; CD8T; MM6; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385309
mod ID: M6ASITE035653 Click to Show/Hide the Full List
mod site chr17:78357509-78357510:- [9]
Sequence TCCCTGTCCCATGGAGAGGGACCCAGCATAGGAAAGCCACA
Motif Score 3.622404762
Cell/Tissue List HeLa; A549; U2OS; H1A; H1B; HEK293A-TOA; iSLK; MSC; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385310
mod ID: M6ASITE035654 Click to Show/Hide the Full List
mod site chr17:78357589-78357590:- [9]
Sequence TCAGGCTCCTGGTAGAGAAGACAGGGGATTCTACTCTGTGC
Motif Score 2.897386905
Cell/Tissue List HeLa; A549; U2OS; H1A; H1B; HEK293A-TOA; iSLK; MSC; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385311
mod ID: M6ASITE035655 Click to Show/Hide the Full List
mod site chr17:78357621-78357622:- [9]
Sequence GGGAGGATGGAGGAGACGGGACATCTTTCACCTCAGGCTCC
Motif Score 3.643047619
Cell/Tissue List HeLa; A549; U2OS; H1A; H1B; HEK293A-TOA; iSLK; MSC; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385312
mod ID: M6ASITE035656 Click to Show/Hide the Full List
mod site chr17:78357793-78357794:- [9]
Sequence CTCCGGGACAGTCACCGAAAACACAGGTTCCAAAGTCTACC
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; A549; U2OS; H1A; H1B; MM6; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385313
mod ID: M6ASITE035657 Click to Show/Hide the Full List
mod site chr17:78357806-78357807:- [9]
Sequence CCCACATCCTCTCCTCCGGGACAGTCACCGAAAACACAGGT
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; A549; hESC-HEK293T; U2OS; H1A; H1B; MM6; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385314
mod ID: M6ASITE035658 Click to Show/Hide the Full List
mod site chr17:78357839-78357840:- [9]
Sequence CTTGGGGTGACCTGAAGGGAACCATCCTGGTACCCCACATC
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; A549; U2OS; H1A; H1B; H1299; MM6; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385315
mod ID: M6ASITE035659 Click to Show/Hide the Full List
mod site chr17:78357850-78357851:- [10]
Sequence GGGGAGAAGGGCTTGGGGTGACCTGAAGGGAACCATCCTGG
Motif Score 2.839113095
Cell/Tissue List CD8T
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385316
mod ID: M6ASITE035660 Click to Show/Hide the Full List
mod site chr17:78358014-78358015:- [9]
Sequence TGCTCTTTGATTTGGTTTAAACCTGAGCTGGTTGTGGAGCC
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385317
mod ID: M6ASITE035661 Click to Show/Hide the Full List
mod site chr17:78358041-78358042:- [9]
Sequence TCTTCAAACTTTCCAACGGAACTTGTTTGCTCTTTGATTTG
Motif Score 3.373380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385318
mod ID: M6ASITE035662 Click to Show/Hide the Full List
mod site chr17:78358054-78358055:- [9]
Sequence AACTGCCAGGGAATCTTCAAACTTTCCAACGGAACTTGTTT
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385319
mod ID: M6ASITE035663 Click to Show/Hide the Full List
mod site chr17:78358073-78358074:- [9]
Sequence GGAATGCTGAACTAATGAGAACTGCCAGGGAATCTTCAAAC
Motif Score 3.373380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385320
mod ID: M6ASITE035664 Click to Show/Hide the Full List
mod site chr17:78358083-78358084:- [9]
Sequence GGACACTTCGGGAATGCTGAACTAATGAGAACTGCCAGGGA
Motif Score 3.373380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385321
mod ID: M6ASITE035665 Click to Show/Hide the Full List
mod site chr17:78358101-78358102:- [9]
Sequence CCTCTGCCTCCAAACAGGGGACACTTCGGGAATGCTGAACT
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385322
mod ID: M6ASITE035666 Click to Show/Hide the Full List
mod site chr17:78358108-78358109:- [9]
Sequence AGCTTCCCCTCTGCCTCCAAACAGGGGACACTTCGGGAATG
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385323
mod ID: M6ASITE035667 Click to Show/Hide the Full List
mod site chr17:78358157-78358158:- [10]
Sequence GTCCTGGTGGGACGATAGCAACCACAAGTGGATTCTCCTTC
Motif Score 2.153267857
Cell/Tissue List CD8T
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385324
mod ID: M6ASITE035668 Click to Show/Hide the Full List
mod site chr17:78358244-78358245:- [9]
Sequence CTGCAGAATGTGGCAGGCGGACCTGGAATGTGTTGGAGGGA
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385325
mod ID: M6ASITE035669 Click to Show/Hide the Full List
mod site chr17:78358289-78358290:- [9]
Sequence TCTGGGGGGAAAGAGGGCGGACAGGCCCCTCCCTCTGCCCT
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385326
mod ID: M6ASITE035670 Click to Show/Hide the Full List
mod site chr17:78358439-78358440:- [9]
Sequence GCCCATTCGGGAGTTCCTGGACCAGTACGATGCCCCGCTTT
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; CD8T; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385327
mod ID: M6ASITE035671 Click to Show/Hide the Full List
mod site chr17:78358490-78358491:- [9]
Sequence GACCGTCAACGGCCACCTGGACTCCTATGAGAAAGTCACCC
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; CD8T; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385328
mod ID: M6ASITE035672 Click to Show/Hide the Full List
mod site chr17:78358502-78358503:- [10]
Sequence TCTCTGTCGGAAGACCGTCAACGGCCACCTGGACTCCTATG
Motif Score 2.147845238
Cell/Tissue List A549
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385329
mod ID: M6ASITE035673 Click to Show/Hide the Full List
mod site chr17:78358509-78358510:- [9]
Sequence TTCAGCATCTCTGTCGGAAGACCGTCAACGGCCACCTGGAC
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; fibroblasts; GM12878; CD8T; H1299; MM6; Huh7; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385330
mod ID: M6ASITE035674 Click to Show/Hide the Full List
mod site chr17:78358669-78358670:- [9]
Sequence TTCCCCTCGCCACCTACTGAACCCTCCTCCGAGGTGCCCGA
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; U2OS; A549; MM6; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385331
mod ID: M6ASITE035675 Click to Show/Hide the Full List
mod site chr17:78358820-78358821:- [9]
Sequence GACCCAGTCTGGGACCAAGAACCTGCGCATCCAGTGTGAGG
Motif Score 2.930744048
Cell/Tissue List HeLa; CD34; HepG2; CD4T; GSC-11; HEK293A-TOA; iSLK; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385332
mod ID: M6ASITE035676 Click to Show/Hide the Full List
mod site chr17:78358827-78358828:- [9]
Sequence GCGTCAAGACCCAGTCTGGGACCAAGAACCTGCGCATCCAG
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HepG2; CD4T; GSC-11; HEK293A-TOA; iSLK; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385333
mod ID: M6ASITE035677 Click to Show/Hide the Full List
mod site chr17:78358839-78358840:- [9]
Sequence TCTTCACGCTCAGCGTCAAGACCCAGTCTGGGACCAAGAAC
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; CD4T; GSC-11; HEK293A-TOA; iSLK; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385334
mod ID: M6ASITE035678 Click to Show/Hide the Full List
mod site chr17:78358871-78358872:- [9]
Sequence TCTGATCCGCGACAGCTCGGACCAGCGCCACTTCTTCACGC
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HepG2; A549; CD4T; GSC-11; HEK293A-TOA; iSLK; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385335
mod ID: M6ASITE035679 Click to Show/Hide the Full List
mod site chr17:78358925-78358926:- [9]
Sequence AGTGACCGGCGGCGAGGCGAACCTGCTGCTCAGTGCCGAGC
Motif Score 2.930744048
Cell/Tissue List HeLa; A549; MM6; CD4T; GSC-11; HEK293A-TOA; iSLK; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385336
mod ID: M6ASITE035680 Click to Show/Hide the Full List
mod site chr17:78359025-78359026:- [9]
Sequence ACACCAGCCTGCGCCTCAAGACCTTCAGCTCCAAGAGCGAG
Motif Score 2.876744048
Cell/Tissue List HeLa; MM6; CD4T; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385337
mod ID: M6ASITE035681 Click to Show/Hide the Full List
mod site chr17:78359045-78359046:- [9]
Sequence CGGGATGAGCCGCCCCCTGGACACCAGCCTGCGCCTCAAGA
Motif Score 3.643047619
Cell/Tissue List HeLa; MM6; CD4T; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330871.3
External Link RMBase: m6A_site_385338
mod ID: M6ASITE035682 Click to Show/Hide the Full List
mod site chr17:78359753-78359754:- [9]
Sequence GACGGAGACTTCGATTCGGGACCAGGTAGGAAGGAGGAGCG
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; CD4T; GSC-11
Seq Type List m6A-seq
Transcript ID List ENST00000587578.1; ENST00000330871.3
External Link RMBase: m6A_site_385339
mod ID: M6ASITE035683 Click to Show/Hide the Full List
mod site chr17:78359766-78359767:- [9]
Sequence GCTCAGCCCCAAGGACGGAGACTTCGATTCGGGACCAGGTA
Motif Score 3.319380952
Cell/Tissue List HeLa; CD34; CD4T; GSC-11
Seq Type List m6A-seq
Transcript ID List ENST00000587578.1; ENST00000330871.3
External Link RMBase: m6A_site_385340
mod ID: M6ASITE035684 Click to Show/Hide the Full List
mod site chr17:78359796-78359797:- [9]
Sequence GCCGCCGCGTCGCCTTGGGGACCCGAGGGGGCTCAGCCCCA
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; GSC-11
Seq Type List m6A-seq
Transcript ID List ENST00000330871.3; ENST00000587578.1
External Link RMBase: m6A_site_385341
mod ID: M6ASITE035685 Click to Show/Hide the Full List
mod site chr17:78359868-78359869:- [9]
Sequence GCGCGAAGGCTCCTTTGTGGACTTCACGGCCGCCAACATCT
Motif Score 4.065041667
Cell/Tissue List HeLa; GSC-11
Seq Type List m6A-seq
Transcript ID List ENST00000587578.1; ENST00000330871.3
External Link RMBase: m6A_site_385342