General Information of the m6A Target Gene (ID: M6ATAR00582)
Target Name Apolipoprotein E (APOE)
Synonyms
Apo-E
    Click to Show/Hide
Gene Name APOE
Chromosomal Location 19q13.32
Family Apolipoprotein A1/A4/E family
Function
APOE is an apolipoprotein, a protein associating with lipid particles, that mainly functions in lipoprotein-mediated lipid transport between organs via the plasma and interstitial fluids. APOE is a core component of plasma lipoproteins and is involved in their production, conversion and clearance. Apoliproteins are amphipathic molecules that interact both with lipids of the lipoprotein particle core and the aqueous environment of the plasma. As such, APOE associates with chylomicrons, chylomicron remnants, very low density lipoproteins (VLDL) and intermediate density lipoproteins (IDL) but shows a preferential binding to high-density lipoproteins (HDL). It also binds a wide range of cellular receptors including the LDL receptor/LDLR, the LDL receptor-related proteins LRP1, LRP2 and LRP8 and the very low-density lipoprotein receptor/VLDLR that mediate the cellular uptake of the APOE-containing lipoprotein particles. Finally, APOE has also a heparin-binding activity and binds heparan-sulfate proteoglycans on the surface of cells, a property that supports the capture and the receptor-mediated uptake of APOE-containing lipoproteins by cells. A main function of APOE is to mediate lipoprotein clearance through the uptake of chylomicrons, VLDLs, and HDLs by hepatocytes. APOE is also involved in the biosynthesis by the liver of VLDLs as well as their uptake by peripheral tissues ensuring the delivery of triglycerides and energy storage in muscle, heart and adipose tissues. By participating in the lipoprotein-mediated distribution of lipids among tissues, APOE plays a critical role in plasma and tissues lipid homeostasis . APOE is also involved in two steps of reverse cholesterol transport, the HDLs-mediated transport of cholesterol from peripheral tissues to the liver, and thereby plays an important role in cholesterol homeostasis. First, it is functionally associated with ABCA1 in the biogenesis of HDLs in tissues. Second, it is enriched in circulating HDLs and mediates their uptake by hepatocytes. APOE also plays an important role in lipid transport in the central nervous system, regulating neuron survival and sprouting . APOE is also involved in innate and adaptive immune responses, controlling for instance the survival of myeloid-derived suppressor cells (By similarity). Binds to the immune cell receptor LILRB4. APOE may also play a role in transcription regulation through a receptor-dependent and cholesterol-independent mechanism, that activates MAP3K12 and a non-canonical MAPK signal transduction pathway that results in enhanced AP-1-mediated transcription of APP ; (Microbial infection) Through its interaction with HCV envelope glycoprotein E2, participates in the attachment of HCV to HSPGs and other receptors (LDLr, VLDLr, and SR-B1) on the cell surface and to the assembly, maturation and infectivity of HCV viral particles . This interaction is probably promoted via the up-regulation of cellular autophagy by the virus.
    Click to Show/Hide
Gene ID 348
Uniprot ID
APOE_HUMAN
HGNC ID
HGNC:613
KEGG ID
hsa:348
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
APOE can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
Fat mass and obesity-associated protein (FTO) [ERASER]
Representative RNA-seq result indicating the expression of this target gene regulated by FTO
Cell Line NB4 cell line Homo sapiens
Treatment: shFTO NB4 cells
Control: shNS NB4 cells
GSE103494
Regulation
logFC: 1.26E+00
p-value: 1.34E-03
More Results Click to View More RNA-seq Results
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary FTO acts as a tumor suppressor to inhibit tumor glycolysis in Papillary thyroid cancer(PTC). FTO/Apolipoprotein E (APOE) axis inhibits PTC glycolysis by modulating IL-6/JAK2/STAT3 signaling pathway.
Target Regulation Down regulation
Responsed Disease Papillary thyroid cancer ICD-11: 2D10.1
Pathway Response JAK-STAT signaling pathway hsa04630
Glycolysis / Gluconeogenesis hsa00010
Cell Process Glycolysis
In-vitro Model TPC-1 Thyroid gland papillary carcinoma Homo sapiens CVCL_6298
Nthy-ori 3-1 Normal Homo sapiens CVCL_2659
K1 Thyroid gland papillary carcinoma Homo sapiens CVCL_2537
IHH-4 Thyroid gland papillary carcinoma Homo sapiens CVCL_2960
B-CPAP Thyroid gland carcinoma Homo sapiens CVCL_0153
Thyroid Cancer [ICD-11: 2D10]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary FTO acts as a tumor suppressor to inhibit tumor glycolysis in Papillary thyroid cancer(PTC). FTO/Apolipoprotein E (APOE) axis inhibits PTC glycolysis by modulating IL-6/JAK2/STAT3 signaling pathway.
Responsed Disease Papillary thyroid cancer [ICD-11: 2D10.1]
Target Regulator Fat mass and obesity-associated protein (FTO) ERASER
Target Regulation Down regulation
Pathway Response JAK-STAT signaling pathway hsa04630
Glycolysis / Gluconeogenesis hsa00010
Cell Process Glycolysis
In-vitro Model TPC-1 Thyroid gland papillary carcinoma Homo sapiens CVCL_6298
Nthy-ori 3-1 Normal Homo sapiens CVCL_2659
K1 Thyroid gland papillary carcinoma Homo sapiens CVCL_2537
IHH-4 Thyroid gland papillary carcinoma Homo sapiens CVCL_2960
B-CPAP Thyroid gland carcinoma Homo sapiens CVCL_0153
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00582)
Apolipoprotein E (APOE)
5-methylcytidine (m5C)
In total 7 m6A sequence/site(s) in this target gene
mod ID: M5CSITE002031 Click to Show/Hide the Full List
mod site chr19:44907911-44907912:+
Sequence AGACACTGTCTGAGCAGGTGCAGGAGGAGCTGCTCAGCTCC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000446996.5; ENST00000434152.5; ENST00000252486.9; ENST00000425718.1
External Link RMBase: m5C_site_24682
mod ID: M5CSITE002032 Click to Show/Hide the Full List
mod site chr19:44908848-44908849:+
Sequence CAGTGTACCAGGCCGGGGCCCGCGAGGGCGCCGAGCGCGGC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000425718.1; ENST00000252486.9; ENST00000434152.5; ENST00000446996.5
External Link RMBase: m5C_site_24683
mod ID: M5CSITE002033 Click to Show/Hide the Full List
mod site chr19:44908969-44908970:+
Sequence CCAGCCGCTACAGGAGCGGGCCCAGGCCTGGGGCGAGCGGC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000252486.9; ENST00000434152.5
External Link RMBase: m5C_site_24684
mod ID: M5CSITE002034 Click to Show/Hide the Full List
mod site chr19:44908970-44908971:+
Sequence CAGCCGCTACAGGAGCGGGCCCAGGCCTGGGGCGAGCGGCT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000252486.9; ENST00000434152.5
External Link RMBase: m5C_site_24685
mod ID: M5CSITE002035 Click to Show/Hide the Full List
mod site chr19:44908971-44908972:+
Sequence AGCCGCTACAGGAGCGGGCCCAGGCCTGGGGCGAGCGGCTG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000434152.5; ENST00000252486.9
External Link RMBase: m5C_site_24686
mod ID: M5CSITE002036 Click to Show/Hide the Full List
mod site chr19:44908975-44908976:+
Sequence GCTACAGGAGCGGGCCCAGGCCTGGGGCGAGCGGCTGCGCG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000252486.9; ENST00000434152.5
External Link RMBase: m5C_site_24687
mod ID: M5CSITE002037 Click to Show/Hide the Full List
mod site chr19:44908976-44908977:+
Sequence CTACAGGAGCGGGCCCAGGCCTGGGGCGAGCGGCTGCGCGC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000252486.9; ENST00000434152.5
External Link RMBase: m5C_site_24688
N6-methyladenosine (m6A)
In total 23 m6A sequence/site(s) in this target gene
mod ID: M6ASITE041485 Click to Show/Hide the Full List
mod site chr19:44905899-44905900:+ [2]
Sequence GGCCTCTAGAAAGAGCTGGGACCCTGGGAACCCCTGGCCTC
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; H1A; H1B; MM6; endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000434152.5; ENST00000485628.2; ENST00000252486.9; ENST00000446996.5
External Link RMBase: m6A_site_443389
mod ID: M6ASITE041486 Click to Show/Hide the Full List
mod site chr19:44905908-44905909:+ [2]
Sequence AAAGAGCTGGGACCCTGGGAACCCCTGGCCTCCAGGTAGTC
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; H1A; H1B; MM6; endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000485628.2; ENST00000446996.5; ENST00000434152.5; ENST00000252486.9
External Link RMBase: m6A_site_443390
mod ID: M6ASITE041487 Click to Show/Hide the Full List
mod site chr19:44906420-44906421:+ [2]
Sequence GGATGGGGAGATAAGAGAAGACCAGGAGGGAGTTAAATAGG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; MM6; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000446996.5; ENST00000425718.1; ENST00000434152.5; ENST00000485628.2; ENST00000252486.9
External Link RMBase: m6A_site_443391
mod ID: M6ASITE041488 Click to Show/Hide the Full List
mod site chr19:44906601-44906602:+ [2]
Sequence GACAGTTTCTCCTTCCCCAGACTGGCCAATCACAGGCAGGA
Motif Score 3.319380952
Cell/Tissue List HeLa; HepG2; H1A; MM6; Huh7; CD4T; GSC-11; HEK293T; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000252486.9; ENST00000425718.1; ENST00000485628.2; ENST00000446996.5; ENST00000434152.5
External Link RMBase: m6A_site_443392
mod ID: M6ASITE041489 Click to Show/Hide the Full List
mod site chr19:44906654-44906655:+ [3]
Sequence TGTGGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGG
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000252486.9; ENST00000446996.5; ENST00000425718.1; ENST00000434152.5; ENST00000485628.2
External Link RMBase: m6A_site_443393
mod ID: M6ASITE041490 Click to Show/Hide the Full List
mod site chr19:44906748-44906749:+ [2]
Sequence TCCTGGCCCCATTCAGGCAGACCCTGGGCCCCCTCTTCTGA
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; MM6; Huh7; CD4T; GSC-11; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000434152.5; ENST00000425718.1; ENST00000252486.9; ENST00000446996.5; rmsk_5009161; ENST00000485628.2
External Link RMBase: m6A_site_443394
mod ID: M6ASITE041491 Click to Show/Hide the Full List
mod site chr19:44907294-44907295:+ [2]
Sequence CCTGCCTGGGGCACACAAGGACACTCAATACATGCTTTTCC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; MM6; CD4T; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq
Transcript ID List ENST00000425718.1; ENST00000485628.2; ENST00000446996.5; ENST00000434152.5; ENST00000252486.9
External Link RMBase: m6A_site_443395
mod ID: M6ASITE041492 Click to Show/Hide the Full List
mod site chr19:44907791-44907792:+ [2]
Sequence AGGTGGAGCAAGCGGTGGAGACAGAGCCGGAGCCCGAGCTG
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; brain; MM6; Huh7; CD4T; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; m6A-REF-seq; MeRIP-seq
Transcript ID List ENST00000425718.1; ENST00000252486.9; ENST00000446996.5; ENST00000434152.5
External Link RMBase: m6A_site_443396
mod ID: M6ASITE041493 Click to Show/Hide the Full List
mod site chr19:44907821-44907822:+ [2]
Sequence AGCCCGAGCTGCGCCAGCAGACCGAGTGGCAGAGCGGCCAG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; MM6; Huh7; CD4T; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000425718.1; ENST00000434152.5; ENST00000252486.9; ENST00000446996.5
External Link RMBase: m6A_site_443397
mod ID: M6ASITE041494 Click to Show/Hide the Full List
mod site chr19:44907850-44907851:+ [2]
Sequence CAGAGCGGCCAGCGCTGGGAACTGGCACTGGGTCGCTTTTG
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; MM6; Huh7; CD4T; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000425718.1; ENST00000434152.5; ENST00000446996.5; ENST00000252486.9
External Link RMBase: m6A_site_443398
mod ID: M6ASITE041495 Click to Show/Hide the Full List
mod site chr19:44907893-44907894:+ [2]
Sequence ATTACCTGCGCTGGGTGCAGACACTGTCTGAGCAGGTGCAG
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; hESC-HEK293T; MM6; Huh7; CD4T; GSC-11; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000446996.5; ENST00000425718.1; ENST00000434152.5; ENST00000252486.9
External Link RMBase: m6A_site_443399
mod ID: M6ASITE041496 Click to Show/Hide the Full List
mod site chr19:44907946-44907947:+ [2]
Sequence AGCTCCCAGGTCACCCAGGAACTGAGGTGAGTGTCCCCATC
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; H1A; MM6; Huh7; CD4T; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000446996.5; ENST00000425718.1; ENST00000252486.9; ENST00000434152.5
External Link RMBase: m6A_site_443400
mod ID: M6ASITE041497 Click to Show/Hide the Full List
mod site chr19:44908548-44908549:+ [2]
Sequence GCAGGGCGCTGATGGACGAGACCATGAAGGAGTTGAAGGCC
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; H1A; H1B; MM6; Huh7; Jurkat; CD4T; GSC-11; HEK293T; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000252486.9; ENST00000446996.5; ENST00000434152.5; ENST00000425718.1
External Link RMBase: m6A_site_443401
mod ID: M6ASITE041498 Click to Show/Hide the Full List
mod site chr19:44908570-44908571:+ [3]
Sequence CATGAAGGAGTTGAAGGCCTACAAATCGGAACTGGAGGAAC
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000434152.5; ENST00000446996.5; ENST00000252486.9; ENST00000425718.1
External Link RMBase: m6A_site_443402
mod ID: M6ASITE041499 Click to Show/Hide the Full List
mod site chr19:44908580-44908581:+ [2]
Sequence TTGAAGGCCTACAAATCGGAACTGGAGGAACAACTGACCCC
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; H1A; H1B; hNPCs; hESCs; MM6; Huh7; Jurkat; CD4T; GSC-11; HEK293T; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000446996.5; ENST00000252486.9; ENST00000434152.5; ENST00000425718.1
External Link RMBase: m6A_site_443403
mod ID: M6ASITE041500 Click to Show/Hide the Full List
mod site chr19:44908589-44908590:+ [2]
Sequence TACAAATCGGAACTGGAGGAACAACTGACCCCGGTGGCGGA
Motif Score 2.951386905
Cell/Tissue List HeLa; HepG2; HEK293T; H1A; H1B; hNPCs; hESCs; A549; H1299; MM6; Huh7; Jurkat; CD4T; GSC-11; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000425718.1; ENST00000446996.5; ENST00000434152.5; ENST00000252486.9
External Link RMBase: m6A_site_443404
mod ID: M6ASITE041501 Click to Show/Hide the Full List
mod site chr19:44908669-44908670:+ [2]
Sequence GCAGGCCCGGCTGGGCGCGGACATGGAGGACGTGTGCGGCC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; hESC-HEK293T; Brain; H1A; H1B; hNPCs; hESCs; A549; H1299; MM6; Huh7; Jurkat; CD4T; GSC-11; MSC; iSLK; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000446996.5; ENST00000434152.5; ENST00000425718.1; ENST00000252486.9
External Link RMBase: m6A_site_443405
mod ID: M6ASITE041502 Click to Show/Hide the Full List
mod site chr19:44908907-44908908:+ [4]
Sequence CGCCTGGGGCCCCTGGTGGAACAGGGCCGCGTGCGGGCCGC
Motif Score 2.951386905
Cell/Tissue List HepG2; H1A; H1B; MM6; Jurkat; CD4T; GSC-11; HEK293T; iSLK; MSC; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000434152.5; ENST00000446996.5; ENST00000252486.9; ENST00000425718.1
External Link RMBase: m6A_site_443406
mod ID: M6ASITE041503 Click to Show/Hide the Full List
mod site chr19:44909022-44909023:+ [2]
Sequence TGGAGGAGATGGGCAGCCGGACCCGCGACCGCCTGGACGAG
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; H1A; H1B; H1299; MM6; Jurkat; CD4T; GSC-11; HEK293T; MSC; iSLK; TIME; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000252486.9; ENST00000434152.5
External Link RMBase: m6A_site_443407
mod ID: M6ASITE041504 Click to Show/Hide the Full List
mod site chr19:44909161-44909162:+ [2]
Sequence GTTCGAGCCCCTGGTGGAAGACATGCAGCGCCAGTGGGCCG
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; hESC-HEK293T; H1A; H1B; MT4; MM6; Jurkat; CD4T; GSC-11; MSC; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000252486.9
External Link RMBase: m6A_site_443408
mod ID: M6ASITE041505 Click to Show/Hide the Full List
mod site chr19:44909239-44909240:+ [3]
Sequence CGCCGCCCCTGTGCCCAGCGACAATCACTGAACGCCGAAGC
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000252486.9
External Link RMBase: m6A_site_443409
mod ID: M6ASITE041506 Click to Show/Hide the Full List
mod site chr19:44909322-44909323:+ [2]
Sequence CGCGCAGCCTGCAGCGGGAGACCCTGTCCCCGCCCCAGCCG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; H1A; H1B; MM6; Huh7; Jurkat; CD4T; GSC-11; HEK293T; MSC; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000252486.9
External Link RMBase: m6A_site_443410
mod ID: M6ASITE041507 Click to Show/Hide the Full List
mod site chr19:44909357-44909358:+ [2]
Sequence CAGCCGTCCTCCTGGGGTGGACCCTAGTTTAATAAAGATTC
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; H1A; MM6; Huh7; Jurkat; CD4T; GSC-11; HEK293T; MSC; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000252486.9
External Link RMBase: m6A_site_443411