m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR00569)
Target Name CUB domain-containing protein 1 (CDCP1)
Synonyms
Membrane glycoprotein gp140; Subtractive immunization M plus HEp3-associated 135 kDa protein; SIMA135; Transmembrane and associated with src kinases; CD318
    Click to Show/Hide
Gene Name CDCP1
Chromosomal Location 3p21.31
Function
May be involved in cell adhesion and cell matrix association. May play a role in the regulation of anchorage versus migration or proliferation versus differentiation via its phosphorylation. May be a novel marker for leukemia diagnosis and for immature hematopoietic stem cell subsets. Belongs to the tetraspanin web involved in tumor progression and metastasis.
    Click to Show/Hide
Gene ID 64866
Uniprot ID
CDCP1_HUMAN
HGNC ID
HGNC:24357
KEGG ID
hsa:64866
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
CDCP1 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
Methyltransferase-like 3 (METTL3) [WRITER]
 Regulator Info 
Representative RNA-seq result indicating the expression of this target gene regulated by METTL3
Cell Line LX2 cell line Homo sapiens
Treatment: shMETTL3 LX2 cells
Control: shLuc LX2 cells
 GSE207909
Regulation
logFC: 6.56E-01
p-value: 5.99E-11
More Results Click to View More RNA-seq Results
Representative RIP-seq result supporting the interaction between CDCP1 and the regulator
Cell Line MDA-MB-231 Homo sapiens
Regulation logFC: 2.49E+00 GSE60213
In total 2 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary m6A methyltransferase METTL3 and demethylases ALKBH5 mediate the m6A modification in 3'-UTR of CDCP1 mRNA. METTL3 and CUB domain-containing protein 1 (CDCP1) are upregulated in the bladder cancer patient samples and the expression of METTL3 and CDCP1 is correlated with the progression status of the bladder cancers.
Target Regulation Up regulation
Responsed Disease Bladder cancer ICD-11: 2C94
 Disease Info 
In-vitro Model UM-UC-3 Bladder carcinoma Homo sapiens CVCL_1783
T24 Bladder carcinoma Homo sapiens CVCL_0554
SV-HUC-1 Normal Homo sapiens CVCL_3798
RWPE-1 Normal Homo sapiens CVCL_3791
NSTC2 (Nickel-induced transformation of human cells)
MC-SV-HUC T-2 Ureteral tumor cell Homo sapiens CVCL_6418
16HBE14o- Normal Homo sapiens CVCL_0112
In-vivo Model To test for malignant transformation, 1×107 cells were inoculated subcutaneously in the dorsal thoracic midline of ten NOD/SCID mice (Weitong Lihua Experimental Animal Technology Co. Ltd). Tumor formation and growth were assessed every 3 days.
Experiment 2 Reporting the m6A Methylation Regulator of This Target Gene [2]
Response Summary The RCas9-METTL3 system mediates efficient sitespecific m6A installation on CUB domain-containing protein 1 (CDCP1) mRNA and promotes bladder cancer development.
Target Regulation Up regulation
Responsed Disease Bladder cancer ICD-11: 2C94
 Disease Info 
In-vitro Model T24 Bladder carcinoma Homo sapiens CVCL_0554
SV-HUC-1 Normal Homo sapiens CVCL_3798
HeLa Endocervical adenocarcinoma Homo sapiens CVCL_0030
RNA demethylase ALKBH5 (ALKBH5) [ERASER]
 Regulator Info 
Representative RNA-seq result indicating the expression of this target gene regulated by ALKBH5
Cell Line 143B cell line Homo sapiens
Treatment: siALKBH5 transfected 143B cells
Control: siControl 143B cells
 GSE154528
Regulation
logFC: 1.57E+00
p-value: 8.38E-14
More Results Click to View More RNA-seq Results
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary m6A methyltransferase METTL3 and demethylases ALKBH5 mediate the m6A modification in 3'-UTR of CDCP1 mRNA. METTL3 and CUB domain-containing protein 1 (CDCP1) are upregulated in the bladder cancer patient samples and the expression of METTL3 and CDCP1 is correlated with the progression status of the bladder cancers.
Target Regulation Down regulation
Responsed Disease Bladder cancer ICD-11: 2C94
 Disease Info 
In-vitro Model UM-UC-3 Bladder carcinoma Homo sapiens CVCL_1783
T24 Bladder carcinoma Homo sapiens CVCL_0554
SV-HUC-1 Normal Homo sapiens CVCL_3798
RWPE-1 Normal Homo sapiens CVCL_3791
NSTC2 (Nickel-induced transformation of human cells)
MC-SV-HUC T-2 Ureteral tumor cell Homo sapiens CVCL_6418
16HBE14o- Normal Homo sapiens CVCL_0112
In-vivo Model To test for malignant transformation, 1×107 cells were inoculated subcutaneously in the dorsal thoracic midline of ten NOD/SCID mice (Weitong Lihua Experimental Animal Technology Co. Ltd). Tumor formation and growth were assessed every 3 days.
Bladder cancer [ICD-11: 2C94]
 Disease Info 
In total 3 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary m6A methyltransferase METTL3 and demethylases ALKBH5 mediate the m6A modification in 3'-UTR of CDCP1 mRNA. METTL3 and CUB domain-containing protein 1 (CDCP1) are upregulated in the bladder cancer patient samples and the expression of METTL3 and CDCP1 is correlated with the progression status of the bladder cancers.
Responsed Disease Bladder cancer [ICD-11: 2C94]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
 Regulator Info 
Target Regulation Up regulation
In-vitro Model UM-UC-3 Bladder carcinoma Homo sapiens CVCL_1783
T24 Bladder carcinoma Homo sapiens CVCL_0554
SV-HUC-1 Normal Homo sapiens CVCL_3798
RWPE-1 Normal Homo sapiens CVCL_3791
NSTC2 (Nickel-induced transformation of human cells)
MC-SV-HUC T-2 Ureteral tumor cell Homo sapiens CVCL_6418
16HBE14o- Normal Homo sapiens CVCL_0112
In-vivo Model To test for malignant transformation, 1×107 cells were inoculated subcutaneously in the dorsal thoracic midline of ten NOD/SCID mice (Weitong Lihua Experimental Animal Technology Co. Ltd). Tumor formation and growth were assessed every 3 days.
Experiment 2 Reporting the m6A-centered Disease Response [2]
Response Summary The RCas9-METTL3 system mediates efficient sitespecific m6A installation on CUB domain-containing protein 1 (CDCP1) mRNA and promotes bladder cancer development.
Responsed Disease Bladder cancer [ICD-11: 2C94]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
 Regulator Info 
Target Regulation Up regulation
In-vitro Model T24 Bladder carcinoma Homo sapiens CVCL_0554
SV-HUC-1 Normal Homo sapiens CVCL_3798
HeLa Endocervical adenocarcinoma Homo sapiens CVCL_0030
Experiment 3 Reporting the m6A-centered Disease Response [1]
Response Summary m6A methyltransferase METTL3 and demethylases ALKBH5 mediate the m6A modification in 3'-UTR of CDCP1 mRNA. METTL3 and CUB domain-containing protein 1 (CDCP1) are upregulated in the bladder cancer patient samples and the expression of METTL3 and CDCP1 is correlated with the progression status of the bladder cancers.
Responsed Disease Bladder cancer [ICD-11: 2C94]
Target Regulator RNA demethylase ALKBH5 (ALKBH5) ERASER
 Regulator Info 
Target Regulation Down regulation
In-vitro Model UM-UC-3 Bladder carcinoma Homo sapiens CVCL_1783
T24 Bladder carcinoma Homo sapiens CVCL_0554
SV-HUC-1 Normal Homo sapiens CVCL_3798
RWPE-1 Normal Homo sapiens CVCL_3791
NSTC2 (Nickel-induced transformation of human cells)
MC-SV-HUC T-2 Ureteral tumor cell Homo sapiens CVCL_6418
16HBE14o- Normal Homo sapiens CVCL_0112
In-vivo Model To test for malignant transformation, 1×107 cells were inoculated subcutaneously in the dorsal thoracic midline of ten NOD/SCID mice (Weitong Lihua Experimental Animal Technology Co. Ltd). Tumor formation and growth were assessed every 3 days.
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Histone modification
m6A Regulator: Methyltransferase-like 3 (METTL3)
 Regulator Info 
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT03228
 Crosstalk Info 
Epigenetic Regulator Histone-lysine N-methyltransferase EZH2 (EZH2)
Regulated Target Histone H3 lysine 27 trimethylation (H3K27me3)
Crosstalk relationship Histone modification → m6A
Disease Gastric cancer
 Disease Info 
Non-coding RNA
m6A Regulator: Methyltransferase-like 3 (METTL3)
 Regulator Info 
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05293
 Crosstalk Info 
Epigenetic Regulator hsa-miR-338-5p
Regulated Target Methyltransferase-like protein 3 (METTL3)
Crosstalk relationship ncRNA → m6A
Disease Gastric cancer
 Disease Info 
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00569)
CUB domain-containing protein 1 (CDCP1)
5-methylcytidine (m5C)
In total 10 m6A sequence/site(s) in this target gene
mod ID: M5CSITE003068 Click to Show/Hide the Full List
mod site chr3:45083660-45083661:-
Sequence TGCCTCGGCCTCCCAAAGTGCTGGGATTACAGATGTGAGCC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m5C_site_31923
mod ID: M5CSITE003069 Click to Show/Hide the Full List
mod site chr3:45083667-45083668:-
Sequence ATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGAT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m5C_site_31924
mod ID: M5CSITE003070 Click to Show/Hide the Full List
mod site chr3:45083668-45083669:-
Sequence AATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m5C_site_31925
mod ID: M5CSITE003071 Click to Show/Hide the Full List
mod site chr3:45083669-45083670:-
Sequence CAATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m5C_site_31926
mod ID: M5CSITE003072 Click to Show/Hide the Full List
mod site chr3:45083671-45083672:-
Sequence AGCAATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTAC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m5C_site_31927
mod ID: M5CSITE003073 Click to Show/Hide the Full List
mod site chr3:45083672-45083673:-
Sequence AAGCAATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m5C_site_31928
mod ID: M5CSITE003074 Click to Show/Hide the Full List
mod site chr3:45083675-45083676:-
Sequence CTCAAGCAATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m5C_site_31929
mod ID: M5CSITE003075 Click to Show/Hide the Full List
mod site chr3:45083677-45083678:-
Sequence GGCTCAAGCAATCCTCCTGCCTCGGCCTCCCAAAGTGCTGG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m5C_site_31930
mod ID: M5CSITE003076 Click to Show/Hide the Full List
mod site chr3:45083678-45083679:-
Sequence GGGCTCAAGCAATCCTCCTGCCTCGGCCTCCCAAAGTGCTG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m5C_site_31931
mod ID: M5CSITE003077 Click to Show/Hide the Full List
mod site chr3:45110683-45110684:- [4]
Sequence TCCTTCCTCAACTTCAACCTCTCCAACTGTGAGAGGAAGGA
Seq Type List Bisulfite-seq
Transcript ID List ENST00000425231.2; ENST00000296129.6
External Link RMBase: m5C_site_31932
N6-methyladenosine (m6A)
In total 72 m6A sequence/site(s) in this target gene
mod ID: M6ASITE060370 Click to Show/Hide the Full List
mod site chr3:45082517-45082518:- [5]
Sequence ATAAACAAATGTACCAAAAAACAAGTATCAAGCTGTTTAAG
Motif Score 2.20572619
Cell/Tissue List A549; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585901
mod ID: M6ASITE060371 Click to Show/Hide the Full List
mod site chr3:45082533-45082534:- [5]
Sequence ATTTCCTGTGCTTTAAATAAACAAATGTACCAAAAAACAAG
Motif Score 2.20572619
Cell/Tissue List A549; MSC; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585902
mod ID: M6ASITE060372 Click to Show/Hide the Full List
mod site chr3:45082631-45082632:- [5]
Sequence GCCTTGGTAAAGGTTAGCAGACTGGTGTGTGTGGATCTGCA
Motif Score 3.319380952
Cell/Tissue List A549; HepG2; H1B; H1A; hESCs; fibroblasts; H1299; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq; m6A-CLIP/IP
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585903
mod ID: M6ASITE060373 Click to Show/Hide the Full List
mod site chr3:45082656-45082657:- [5]
Sequence AACAAGCACAAGCCCACCGGACATGGCCTTGGTAAAGGTTA
Motif Score 3.643047619
Cell/Tissue List A549; HepG2; H1B; H1A; hESCs; fibroblasts; H1299; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585904
mod ID: M6ASITE060374 Click to Show/Hide the Full List
mod site chr3:45082675-45082676:- [5]
Sequence TCAAGGAAGAGTCAACTGGAACAAGCACAAGCCCACCGGAC
Motif Score 2.951386905
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585905
mod ID: M6ASITE060375 Click to Show/Hide the Full List
mod site chr3:45082738-45082739:- [5]
Sequence GGAAGGCCAGCGCATGCAGGACTGGTCTCTAATGCTGTGGT
Motif Score 4.065041667
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585906
mod ID: M6ASITE060376 Click to Show/Hide the Full List
mod site chr3:45082833-45082834:- [5]
Sequence ACATTTCAGGGTCACTGGAAACAGTGAAGTGCCATTTGTTG
Motif Score 2.20572619
Cell/Tissue List A549; HepG2; H1A; H1B; fibroblasts; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585907
mod ID: M6ASITE060377 Click to Show/Hide the Full List
mod site chr3:45082853-45082854:- [5]
Sequence CCAGGCCCCACTTACGTAAAACATTTCAGGGTCACTGGAAA
Motif Score 2.20572619
Cell/Tissue List A549; HepG2; H1A; H1B; fibroblasts; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585908
mod ID: M6ASITE060378 Click to Show/Hide the Full List
mod site chr3:45082896-45082897:- [5]
Sequence GAAGGGGCCCAGCCTGAGGAACCCTGGCTCTTTTCTTTAAA
Motif Score 2.930744048
Cell/Tissue List A549; HepG2; H1A; H1B; fibroblasts; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585909
mod ID: M6ASITE060379 Click to Show/Hide the Full List
mod site chr3:45082945-45082946:- [5]
Sequence ACAAGTTGCTGGCTCCTGAGACCAGTATTTCCTGGAGCTGT
Motif Score 2.876744048
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; iSLK; TIME; MSC; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585910
mod ID: M6ASITE060380 Click to Show/Hide the Full List
mod site chr3:45082965-45082966:- [5]
Sequence TGAGGGCTCAAAACTCCTGGACAAGTTGCTGGCTCCTGAGA
Motif Score 3.643047619
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; iSLK; TIME; MSC; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585911
mod ID: M6ASITE060381 Click to Show/Hide the Full List
mod site chr3:45082973-45082974:- [5]
Sequence CCTTCAACTGAGGGCTCAAAACTCCTGGACAAGTTGCTGGC
Motif Score 2.627720238
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; iSLK; TIME; MSC; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585912
mod ID: M6ASITE060382 Click to Show/Hide the Full List
mod site chr3:45083011-45083012:- [5]
Sequence CATCACTGTTGCCTGCAAGGACACCACGTGGCCATTTTCCT
Motif Score 3.643047619
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; iSLK; TIME; MSC; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585913
mod ID: M6ASITE060383 Click to Show/Hide the Full List
mod site chr3:45083032-45083033:- [6]
Sequence GCTACTTGTCACCATCACCGACATCACTGTTGCCTGCAAGG
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T; A549
Seq Type List MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585914
mod ID: M6ASITE060384 Click to Show/Hide the Full List
mod site chr3:45083102-45083103:- [5]
Sequence CCCAGCCCCTTCCAAGCAGGACTAGGTGCCCTGCATTCCAC
Motif Score 4.065041667
Cell/Tissue List A549; HepG2; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585915
mod ID: M6ASITE060385 Click to Show/Hide the Full List
mod site chr3:45083584-45083585:- [7]
Sequence TACCTGCCCAGTAACTGTGGACTTTTGCTTCCTCACCCCTG
Motif Score 4.065041667
Cell/Tissue List fibroblasts; A549
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585916
mod ID: M6ASITE060386 Click to Show/Hide the Full List
mod site chr3:45083904-45083905:- [8]
Sequence CTTTTTTTTTTTAATGTGAGACAGGATCTCATTCTGTTGCC
Motif Score 2.897386905
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585917
mod ID: M6ASITE060387 Click to Show/Hide the Full List
mod site chr3:45083973-45083974:- [8]
Sequence TCAGGTGAGTAGACCATGAGACCAATGTGTGCTCACATTAC
Motif Score 2.876744048
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585918
mod ID: M6ASITE060388 Click to Show/Hide the Full List
mod site chr3:45083981-45083982:- [8]
Sequence ATCTCTAATCAGGTGAGTAGACCATGAGACCAATGTGTGCT
Motif Score 2.876744048
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585919
mod ID: M6ASITE060389 Click to Show/Hide the Full List
mod site chr3:45084011-45084012:- [8]
Sequence TATTGTAATGAAAAAGAAAGACTGGGATTAATCTCTAATCA
Motif Score 3.319380952
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585920
mod ID: M6ASITE060390 Click to Show/Hide the Full List
mod site chr3:45084227-45084228:- [5]
Sequence ACTCTAACACTTAAAAAAAAACCCAGATCAGAAGATCTGGC
Motif Score 2.185083333
Cell/Tissue List A549; fibroblasts; iSLK; MSC; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585921
mod ID: M6ASITE060391 Click to Show/Hide the Full List
mod site chr3:45084247-45084248:- [5]
Sequence ATGTTTTGTTTAGCTTGCGGACTCTAACACTTAAAAAAAAA
Motif Score 4.065041667
Cell/Tissue List A549; fibroblasts; iSLK; MSC; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585922
mod ID: M6ASITE060392 Click to Show/Hide the Full List
mod site chr3:45084356-45084357:- [5]
Sequence AGGTGGGGATTAGGACCAGAACATCTTTGGGGTGCTGTTAT
Motif Score 2.951386905
Cell/Tissue List A549; HepG2; fibroblasts; iSLK; MSC; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585923
mod ID: M6ASITE060393 Click to Show/Hide the Full List
mod site chr3:45084362-45084363:- [5]
Sequence AGCCACAGGTGGGGATTAGGACCAGAACATCTTTGGGGTGC
Motif Score 3.622404762
Cell/Tissue List A549; HepG2; fibroblasts; iSLK; MSC; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585924
mod ID: M6ASITE060394 Click to Show/Hide the Full List
mod site chr3:45084389-45084390:- [5]
Sequence AGAGCCTTTTGCCATGCAAGACAACATAGCCACAGGTGGGG
Motif Score 2.897386905
Cell/Tissue List A549; HepG2; fibroblasts; iSLK; MSC; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585925
mod ID: M6ASITE060395 Click to Show/Hide the Full List
mod site chr3:45084963-45084964:- [9]
Sequence CATATCTGCTTTGATAAGAGACTTCCTGATTCTCTAGGTCG
Motif Score 3.319380952
Cell/Tissue List HepG2; A549; iSLK; MSC; TIME; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585926
mod ID: M6ASITE060396 Click to Show/Hide the Full List
mod site chr3:45085123-45085124:- [10]
Sequence TTTCACCTGACTTAGTAATAACTCATACTAACTGGTTTGGA
Motif Score 2.590089286
Cell/Tissue List A549
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585927
mod ID: M6ASITE060397 Click to Show/Hide the Full List
mod site chr3:45085289-45085290:- [5]
Sequence AGAGGCTTGCCCTCTTCAGGACAACAGTTCCAATTCCAAGG
Motif Score 3.643047619
Cell/Tissue List A549; HepG2; H1B; fibroblasts; H1299; iSLK; MSC; TIME; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585928
mod ID: M6ASITE060398 Click to Show/Hide the Full List
mod site chr3:45085311-45085312:- [5]
Sequence CCCTGGATTCAGAGTGTTAAACAGAGGCTTGCCCTCTTCAG
Motif Score 2.20572619
Cell/Tissue List A549; HepG2; H1B; fibroblasts; H1299; iSLK; MSC; TIME; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585929
mod ID: M6ASITE060399 Click to Show/Hide the Full List
mod site chr3:45085464-45085465:- [5]
Sequence GGACTCATTCTAAGGGCAAGACATTGAAAATGATGAATTCC
Motif Score 2.897386905
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; iSLK; MSC; TIME; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585930
mod ID: M6ASITE060400 Click to Show/Hide the Full List
mod site chr3:45085482-45085483:- [5]
Sequence AACTTCACATTGCTCAGTGGACTCATTCTAAGGGCAAGACA
Motif Score 4.065041667
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; iSLK; MSC; TIME; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585931
mod ID: M6ASITE060401 Click to Show/Hide the Full List
mod site chr3:45085510-45085511:- [5]
Sequence ACAGCAGGAGGTTTTCCTGGACACCGCCAACTTCACATTGC
Motif Score 3.643047619
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; iSLK; MSC; TIME; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585932
mod ID: M6ASITE060402 Click to Show/Hide the Full List
mod site chr3:45085530-45085531:- [5]
Sequence AGAGGAATTATACAGAAGGAACAGCAGGAGGTTTTCCTGGA
Motif Score 2.951386905
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585933
mod ID: M6ASITE060403 Click to Show/Hide the Full List
mod site chr3:45085586-45085587:- [5]
Sequence TCATAAAGCAGGGCACTGAGACACCCGTCCGTGTTCCTAAC
Motif Score 2.897386905
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; Huh7; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585934
mod ID: M6ASITE060404 Click to Show/Hide the Full List
mod site chr3:45085668-45085669:- [5]
Sequence CACAGACATTCCCTTACTGAACACTCAGGAGCCCATGGAGC
Motif Score 2.951386905
Cell/Tissue List A549; hESC-HEK293T; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; MAZTER-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585935
mod ID: M6ASITE060405 Click to Show/Hide the Full List
mod site chr3:45085683-45085684:- [5]
Sequence TGTAAGCAGCAAGGACACAGACATTCCCTTACTGAACACTC
Motif Score 2.897386905
Cell/Tissue List A549; hESC-HEK293T; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; MAZTER-seq; m6A-seq; m6A-CLIP/IP
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585936
mod ID: M6ASITE060406 Click to Show/Hide the Full List
mod site chr3:45085689-45085690:- [5]
Sequence TGGGGATGTAAGCAGCAAGGACACAGACATTCCCTTACTGA
Motif Score 3.643047619
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585937
mod ID: M6ASITE060407 Click to Show/Hide the Full List
mod site chr3:45085713-45085714:- [6]
Sequence GTACACCTTCTCCCATCCCAACAATGGGGATGTAAGCAGCA
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T; A549
Seq Type List MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585938
mod ID: M6ASITE060408 Click to Show/Hide the Full List
mod site chr3:45085736-45085737:- [5]
Sequence CCTCCTGAGTCTGAGAGTGAACCGTACACCTTCTCCCATCC
Motif Score 2.930744048
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585939
mod ID: M6ASITE060409 Click to Show/Hide the Full List
mod site chr3:45085869-45085870:- [5]
Sequence CTTCCTGCAGCCAGAGGTGGACACCTACCGGCCGTTCCAGG
Motif Score 3.643047619
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585940
mod ID: M6ASITE060410 Click to Show/Hide the Full List
mod site chr3:45085932-45085933:- [5]
Sequence TGTGTATGCAGTCATCGAGGACACCATGGTATATGGGCATC
Motif Score 3.643047619
Cell/Tissue List A549; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585941
mod ID: M6ASITE060411 Click to Show/Hide the Full List
mod site chr3:45085965-45085966:- [5]
Sequence GTTTCAGAAAGGGCGAAAGGACAATGACTCCCATGTGTATG
Motif Score 3.643047619
Cell/Tissue List A549; hESC-HEK293T; HepG2; H1B; H1A; hESCs; fibroblasts; LCLs; H1299; iSLK; MSC; TIME; HEC-1-A
Seq Type List MeRIP-seq; MAZTER-seq; m6A-seq; m6A-CLIP/IP
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585942
mod ID: M6ASITE060412 Click to Show/Hide the Full List
mod site chr3:45086052-45086053:- [5]
Sequence AAATAGGAAAAAGAAGACAAACAAGGGCCCCGCTGTGGGTA
Motif Score 2.20572619
Cell/Tissue List A549; hESCs
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585943
mod ID: M6ASITE060413 Click to Show/Hide the Full List
mod site chr3:45086056-45086057:- [7]
Sequence TTCCAAATAGGAAAAAGAAGACAAACAAGGGCCCCGCTGTG
Motif Score 2.897386905
Cell/Tissue List fibroblasts; MSC; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585944
mod ID: M6ASITE060414 Click to Show/Hide the Full List
mod site chr3:45091178-45091179:- [8]
Sequence CGGTGACACTTACCCCAAGGACTGTGGGTAAGGGCCTTCAG
Motif Score 4.065041667
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585945
mod ID: M6ASITE060415 Click to Show/Hide the Full List
mod site chr3:45091210-45091211:- [9]
Sequence CACGAGCGGCAAGCAGCTAGACCTGCTCTTCTCGGTGACAC
Motif Score 2.876744048
Cell/Tissue List HepG2; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585946
mod ID: M6ASITE060416 Click to Show/Hide the Full List
mod site chr3:45091328-45091329:- [8]
Sequence TGATCATCCAGGAGCAGCGGACCCGGGCTGAGGAGATCTTC
Motif Score 3.622404762
Cell/Tissue List endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585947
mod ID: M6ASITE060417 Click to Show/Hide the Full List
mod site chr3:45091364-45091365:- [11]
Sequence GGAGCGGCGTGGTCTGCCAGACAGGGCGCGCATTCATGATC
Motif Score 2.897386905
Cell/Tissue List TIME; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585948
mod ID: M6ASITE060418 Click to Show/Hide the Full List
mod site chr3:45091417-45091418:- [8]
Sequence GAACATCAGCGTGCCCAGAGACCAGGTGGCCTGCCTGACTT
Motif Score 2.876744048
Cell/Tissue List endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585949
mod ID: M6ASITE060419 Click to Show/Hide the Full List
mod site chr3:45091435-45091436:- [8]
Sequence CCTCACCTCTGTGTCCTGGAACATCAGCGTGCCCAGAGACC
Motif Score 2.951386905
Cell/Tissue List endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585950
mod ID: M6ASITE060420 Click to Show/Hide the Full List
mod site chr3:45091471-45091472:- [8]
Sequence CCTGAGGACCCCCAACTGGGACCGGGGCCTGCCATCCCTCA
Motif Score 3.622404762
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585951
mod ID: M6ASITE060421 Click to Show/Hide the Full List
mod site chr3:45091484-45091485:- [8]
Sequence AAAGCAAGGTCTACCTGAGGACCCCCAACTGGGACCGGGGC
Motif Score 3.622404762
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585952
mod ID: M6ASITE060422 Click to Show/Hide the Full List
mod site chr3:45093368-45093369:- [8]
Sequence GCAGATCCAGGTGAAGCAGAACATCTCGGTGACCCTTCGCA
Motif Score 2.951386905
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585953
mod ID: M6ASITE060423 Click to Show/Hide the Full List
mod site chr3:45093428-45093429:- [8]
Sequence CAGTGCCATACCCAGCCAGGACCTGTACTTCGGCTCCTTCT
Motif Score 3.622404762
Cell/Tissue List endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585954
mod ID: M6ASITE060424 Click to Show/Hide the Full List
mod site chr3:45093539-45093540:- [8]
Sequence GAAGCTGCTGGTGCCCAAGGACAGGCTCAGCCTGGTGCTGG
Motif Score 3.643047619
Cell/Tissue List endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585955
mod ID: M6ASITE060425 Click to Show/Hide the Full List
mod site chr3:45093647-45093648:- [8]
Sequence ACTTCTTCCAGGCTGCACAGACCACCGGTACTGCCAAAGGA
Motif Score 2.876744048
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585956
mod ID: M6ASITE060426 Click to Show/Hide the Full List
mod site chr3:45095352-45095353:- [8]
Sequence TGTGGATGAATGTGGAAAAAACCATAAGTACGCCCCTGAAT
Motif Score 2.185083333
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585957
mod ID: M6ASITE060427 Click to Show/Hide the Full List
mod site chr3:45095410-45095411:- [8]
Sequence ACCCTGACATCTGGCTCCAAACACAAAATCTCCTTCCTTTG
Motif Score 2.20572619
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585958
mod ID: M6ASITE060428 Click to Show/Hide the Full List
mod site chr3:45095448-45095449:- [8]
Sequence TCGTGTGTCTAGAATCTCGGACCTGCAGTAGCAACCTCACC
Motif Score 3.622404762
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585959
mod ID: M6ASITE060429 Click to Show/Hide the Full List
mod site chr3:45095497-45095498:- [8]
Sequence ATCGAGCCACGGCCCGTCAAACAGAGCCGCAAGTTTGTCCC
Motif Score 2.20572619
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6
External Link RMBase: m6A_site_585960
mod ID: M6ASITE060430 Click to Show/Hide the Full List
mod site chr3:45110573-45110574:- [8]
Sequence GCCTGGGAACATGGCGGGGAACTTCAACCTCTCTCTGCAAG
Motif Score 3.373380952
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000425231.2; ENST00000296129.6
External Link RMBase: m6A_site_585961
mod ID: M6ASITE060431 Click to Show/Hide the Full List
mod site chr3:45110585-45110586:- [8]
Sequence GGAGGACAAGCAGCCTGGGAACATGGCGGGGAACTTCAACC
Motif Score 2.951386905
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6; ENST00000425231.2
External Link RMBase: m6A_site_585962
mod ID: M6ASITE060432 Click to Show/Hide the Full List
mod site chr3:45110600-45110601:- [8]
Sequence CGAGGTGTTCAAGCTGGAGGACAAGCAGCCTGGGAACATGG
Motif Score 3.643047619
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6; ENST00000425231.2
External Link RMBase: m6A_site_585963
mod ID: M6ASITE060433 Click to Show/Hide the Full List
mod site chr3:45112099-45112100:- [8]
Sequence CTCCGGCTTCAGCATTGCAAACCGCTCATCTATAAAACGTG
Motif Score 2.185083333
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6; ENST00000425231.2
External Link RMBase: m6A_site_585964
mod ID: M6ASITE060434 Click to Show/Hide the Full List
mod site chr3:45112211-45112212:- [8]
Sequence CCACCGTGGTCAGGATCGGAACCTTCTGCAGCAATGGCACT
Motif Score 2.930744048
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000425231.2; ENST00000296129.6
External Link RMBase: m6A_site_585965
mod ID: M6ASITE060435 Click to Show/Hide the Full List
mod site chr3:45112367-45112368:- [8]
Sequence TGTTGCCTACCCTCAACAGAACTTTCATCTGGGATGTCAAA
Motif Score 3.373380952
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6; ENST00000490471.1; ENST00000425231.2
External Link RMBase: m6A_site_585966
mod ID: M6ASITE060436 Click to Show/Hide the Full List
mod site chr3:45118514-45118515:- [8]
Sequence TACATCGTCATTTCTAAAAGACATATAACCATGTTGTCCAT
Motif Score 2.897386905
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000425231.2; ENST00000296129.6; ENST00000490471.1
External Link RMBase: m6A_site_585967
mod ID: M6ASITE060437 Click to Show/Hide the Full List
mod site chr3:45118541-45118542:- [8]
Sequence ACCCCGACTCTGCTGGCAAAACCCTGTTACATCGTCATTTC
Motif Score 2.185083333
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000490471.1; ENST00000425231.2; ENST00000296129.6
External Link RMBase: m6A_site_585968
mod ID: M6ASITE060438 Click to Show/Hide the Full List
mod site chr3:45118561-45118562:- [8]
Sequence CAGTTCTCATAAAGCTGGGGACCCCGACTCTGCTGGCAAAA
Motif Score 3.622404762
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6; ENST00000490471.1; ENST00000425231.2
External Link RMBase: m6A_site_585969
mod ID: M6ASITE060439 Click to Show/Hide the Full List
mod site chr3:45139410-45139411:- [8]
Sequence TTGGAGACAGCCTCATTCAGACAAGCTCTGGAGTTGGTCAA
Motif Score 2.897386905
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000296129.6; ENST00000490471.1; rmsk_949942; ENST00000425231.2
External Link RMBase: m6A_site_585970
mod ID: M6ASITE060440 Click to Show/Hide the Full List
mod site chr3:45139548-45139549:- [8]
Sequence TACATTGCCCGTGTCTTCAGACTGCACATCCCAAAGGGCTT
Motif Score 3.319380952
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000490471.1; ENST00000425231.2; ENST00000296129.6
External Link RMBase: m6A_site_585971
mod ID: M6ASITE060441 Click to Show/Hide the Full List
mod site chr3:45146273-45146274:- [8]
Sequence CGGAGTCATGGCCGGCCTGAACTGCGGGGTCTCTATCGCAC
Motif Score 3.373380952
Cell/Tissue List HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000425231.2; ENST00000296129.6
External Link RMBase: m6A_site_585972