General Information of the m6A Target Gene (ID: M6ATAR00265)
Target Name Trans-acting T-cell-specific transcription factor GATA-3 (GATA3)
Synonyms
GATA-binding factor 3
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Gene Name GATA3
Chromosomal Location 10p14
Function
Transcriptional activator which binds to the enhancer of the T-cell receptor alpha and delta genes. Binds to the consensus sequence 5'-AGATAG-3'. Required for the T-helper 2 (Th2) differentiation process following immune and inflammatory responses. Positively regulates ASB2 expression (By similarity).
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Gene ID 2625
Uniprot ID
GATA3_HUMAN
HGNC ID
HGNC:4172
KEGG ID
hsa:2625
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
GATA3 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
Browse Regulator
Browse Disease
Protein virilizer homolog (VIRMA) [WRITER]
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [3]
Response Summary KIAA1429 induced m6A methylation on the 3' UTR of Trans-acting T-cell-specific transcription factor GATA-3 (GATA3) pre-mRNA, leading to the separation of the RNA-binding protein HuR and the degradation of GATA3 pre-mRNA. KIAA1429 was considerably upregulated in Hepatocellular carcinoma tissues.
Target Regulation Down regulation
Responsed Disease Hepatocellular carcinoma ICD-11: 2C12.02
Cell Process Cell proliferation and metastasis
In-vitro Model HCCLM3 Adult hepatocellular carcinoma Homo sapiens CVCL_6832
HEK293T Normal Homo sapiens CVCL_0063
Hep 3B2.1-7 Childhood hepatocellular carcinoma Homo sapiens CVCL_0326
Hep-G2 Hepatoblastoma Homo sapiens CVCL_0027
Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
SK-HEP-1 Liver and intrahepatic bile duct epithelial neoplasm Homo sapiens CVCL_0525
SNU-182 Adult hepatocellular carcinoma Homo sapiens CVCL_0090
SNU-449 Adult hepatocellular carcinoma Homo sapiens CVCL_0454
Liver cancer [ICD-11: 2C12]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [3]
Response Summary KIAA1429 induced m6A methylation on the 3' UTR of Trans-acting T-cell-specific transcription factor GATA-3 (GATA3) pre-mRNA, leading to the separation of the RNA-binding protein HuR and the degradation of GATA3 pre-mRNA. KIAA1429 was considerably upregulated in Hepatocellular carcinoma tissues.
Responsed Disease Hepatocellular carcinoma [ICD-11: 2C12.02]
Target Regulator Protein virilizer homolog (VIRMA) WRITER
Target Regulation Down regulation
Cell Process Cell proliferation and metastasis
In-vitro Model HCCLM3 Adult hepatocellular carcinoma Homo sapiens CVCL_6832
HEK293T Normal Homo sapiens CVCL_0063
Hep 3B2.1-7 Childhood hepatocellular carcinoma Homo sapiens CVCL_0326
Hep-G2 Hepatoblastoma Homo sapiens CVCL_0027
Huh-7 Adult hepatocellular carcinoma Homo sapiens CVCL_0336
SK-HEP-1 Liver and intrahepatic bile duct epithelial neoplasm Homo sapiens CVCL_0525
SNU-182 Adult hepatocellular carcinoma Homo sapiens CVCL_0090
SNU-449 Adult hepatocellular carcinoma Homo sapiens CVCL_0454
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Non-coding RNA
m6A Regulator: Protein virilizer homolog (VIRMA)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05057
Epigenetic Regulator GATA3 antisense RNA 1 (GATA3-AS1)
Regulated Target Protein virilizer homolog (VIRMA)
Crosstalk relationship ncRNA → m6A
Disease Liver cancer
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00265)
Trans-acting T-cell-specific transcription factor GATA-3 (GATA3)
N6-methyladenosine (m6A)
In total 38 m6A sequence/site(s) in this target gene
mod ID: M6ASITE095362 Click to Show/Hide the Full List
mod site chr10:8053667-8053668:+ [4]
Sequence GCGCAGAGCGTGGCCTGGAGACCCGCGAGCCGGGGAAGGTC
Motif Score 2.876744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000643001.1; ENST00000481743.2
External Link RMBase: m6A_site_92130
mod ID: M6ASITE095363 Click to Show/Hide the Full List
mod site chr10:8053731-8053732:+ [4]
Sequence CGGGGTTGGGGTCGGTGCAGACCGAGGGCTGGTTTCCTTGA
Motif Score 2.876744048
Cell/Tissue List HeLa; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000643001.1; ENST00000481743.2
External Link RMBase: m6A_site_92131
mod ID: M6ASITE095364 Click to Show/Hide the Full List
mod site chr10:8054689-8054690:+ [4]
Sequence CGCGCCACAGCTGTCTGCGAACACTGAGCTGCCTGGCGCCG
Motif Score 2.951386905
Cell/Tissue List HeLa; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000379328.9; ENST00000645492.1; ENST00000643001.1; ENST00000481743.2
External Link RMBase: m6A_site_92132
mod ID: M6ASITE095365 Click to Show/Hide the Full List
mod site chr10:8054814-8054815:+ [4]
Sequence AGAGACGGAGGGAGAGCGAGACAGAGCGAGCAACGCAATCT
Motif Score 2.897386905
Cell/Tissue List HeLa; Huh7; Jurkat; CD4T; HEK293A-TOA; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000346208.4; ENST00000645492.1; rmsk_3230106; ENST00000643001.1; ENST00000379328.9; ENST00000481743.2
External Link RMBase: m6A_site_92133
mod ID: M6ASITE095366 Click to Show/Hide the Full List
mod site chr10:8055301-8055302:+ [4]
Sequence TGCAGGTGACCCGAGGAGGGACTCCGCCTCCGAGCGGCTGA
Motif Score 4.065041667
Cell/Tissue List HeLa; Jurkat; CD4T; HEK293A-TOA; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000643001.1; ENST00000346208.4; ENST00000645492.1; ENST00000379328.9; ENST00000481743.2
External Link RMBase: m6A_site_92134
mod ID: M6ASITE095367 Click to Show/Hide the Full List
mod site chr10:8055324-8055325:+ [5]
Sequence CCGCCTCCGAGCGGCTGAGGACCCCGGTGCAGAGGAGCCTG
Motif Score 3.622404762
Cell/Tissue List Jurkat; CD4T; HEK293A-TOA; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000481743.2; ENST00000645492.1; ENST00000346208.4; ENST00000643001.1; ENST00000379328.9
External Link RMBase: m6A_site_92135
mod ID: M6ASITE095368 Click to Show/Hide the Full List
mod site chr10:8055478-8055479:+ [6]
Sequence TCCAAGATAATTTTTAAAAAACCTTCTCCTTTGCTCACCTT
Motif Score 2.185083333
Cell/Tissue List HEK293T; MT4; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000481743.2; ENST00000379328.9; ENST00000643001.1; ENST00000645492.1; ENST00000346208.4
External Link RMBase: m6A_site_92136
mod ID: M6ASITE095369 Click to Show/Hide the Full List
mod site chr10:8055591-8055592:+ [7]
Sequence CCCCCCGACCTCCCAGGCGGACCGCCCTCCCTCCCCGCGCG
Motif Score 3.622404762
Cell/Tissue List HEK293T; MT4; Huh7; Jurkat
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000481743.2; ENST00000346208.4; ENST00000645492.1; ENST00000643001.1; ENST00000379328.9
External Link RMBase: m6A_site_92137
mod ID: M6ASITE095370 Click to Show/Hide the Full List
mod site chr10:8055671-8055672:+ [7]
Sequence GGCCATGGAGGTGACGGCGGACCAGCCGCGCTGGGTGAGCC
Motif Score 3.622404762
Cell/Tissue List MT4; Jurkat; CD4T; HEK293T
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000481743.2; ENST00000346208.4; ENST00000643001.1; ENST00000645492.1; ENST00000379328.9
External Link RMBase: m6A_site_92138
mod ID: M6ASITE095371 Click to Show/Hide the Full List
mod site chr10:8055728-8055729:+ [7]
Sequence GCTCAACGGGCAGCACCCGGACACGCACCACCCGGGCCTCA
Motif Score 3.643047619
Cell/Tissue List MT4; Jurkat; HEK293T
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000643001.1; ENST00000346208.4; ENST00000645492.1; ENST00000379328.9; ENST00000481743.2
External Link RMBase: m6A_site_92139
mod ID: M6ASITE095372 Click to Show/Hide the Full List
mod site chr10:8055851-8055852:+ [4]
Sequence CGTCCCGCCCTACTACGGAAACTCGGTCAGGGCCACGGTGC
Motif Score 2.627720238
Cell/Tissue List HeLa; MT4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000481743.2; ENST00000346208.4; ENST00000643001.1; ENST00000379328.9; ENST00000645492.1
External Link RMBase: m6A_site_92140
mod ID: M6ASITE095373 Click to Show/Hide the Full List
mod site chr10:8058553-8058554:+ [4]
Sequence GCCGAAGGACGTCTCCCCGGACCCATCGCTGTCCACCCCAG
Motif Score 3.622404762
Cell/Tissue List HeLa; CD4T
Seq Type List m6A-seq
Transcript ID List ENST00000346208.4; ENST00000461472.1; ENST00000379328.9; ENST00000645492.1
External Link RMBase: m6A_site_92141
mod ID: M6ASITE095374 Click to Show/Hide the Full List
mod site chr10:8058758-8058759:+ [7]
Sequence GTGCCCGAGTACAGCTCCGGACTCTTCCCCCCCAGCAGCCT
Motif Score 4.065041667
Cell/Tissue List MT4; CD4T
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000645492.1; ENST00000379328.9; ENST00000461472.1; ENST00000346208.4
External Link RMBase: m6A_site_92142
mod ID: M6ASITE095375 Click to Show/Hide the Full List
mod site chr10:8064010-8064011:+ [7]
Sequence AGAAGGCAGGGAGTGTGTGAACTGTGGGGCAACCTCGACCC
Motif Score 3.373380952
Cell/Tissue List MT4
Seq Type List MeRIP-seq
Transcript ID List ENST00000346208.4; ENST00000645492.1; ENST00000379328.9; ENST00000461472.1
External Link RMBase: m6A_site_92143
mod ID: M6ASITE095376 Click to Show/Hide the Full List
mod site chr10:8064056-8064057:+ [7]
Sequence TGGCGGCGAGATGGCACGGGACACTACCTGTGCAACGCCTG
Motif Score 3.643047619
Cell/Tissue List MT4
Seq Type List MeRIP-seq
Transcript ID List ENST00000379328.9; ENST00000645492.1; ENST00000461472.1; ENST00000346208.4
External Link RMBase: m6A_site_92144
mod ID: M6ASITE095377 Click to Show/Hide the Full List
mod site chr10:8064101-8064102:+ [7]
Sequence CTCTATCACAAAATGAACGGACAGAACCGGCCCCTCATTAA
Motif Score 3.643047619
Cell/Tissue List MT4; Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000461472.1; ENST00000346208.4; ENST00000379328.9; ENST00000645492.1
External Link RMBase: m6A_site_92145
mod ID: M6ASITE095378 Click to Show/Hide the Full List
mod site chr10:8064106-8064107:+ [7]
Sequence TCACAAAATGAACGGACAGAACCGGCCCCTCATTAAGCCCA
Motif Score 2.930744048
Cell/Tissue List MT4; Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000645492.1; ENST00000379328.9; ENST00000346208.4; ENST00000461472.1
External Link RMBase: m6A_site_92146
mod ID: M6ASITE095379 Click to Show/Hide the Full List
mod site chr10:8069506-8069507:+ [7]
Sequence AGCAGGGACGTCCTGTGCGAACTGTCAGACCACCACAACCA
Motif Score 3.373380952
Cell/Tissue List MT4; Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000379328.9; ENST00000461472.1; ENST00000645492.1; ENST00000346208.4
External Link RMBase: m6A_site_92147
mod ID: M6ASITE095380 Click to Show/Hide the Full List
mod site chr10:8069514-8069515:+ [8]
Sequence CGTCCTGTGCGAACTGTCAGACCACCACAACCACACTCTGG
Motif Score 2.876744048
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000346208.4; ENST00000645492.1; ENST00000461472.1; ENST00000379328.9
External Link RMBase: m6A_site_92148
mod ID: M6ASITE095381 Click to Show/Hide the Full List
mod site chr10:8069554-8069555:+ [8]
Sequence GAGGAGGAATGCCAATGGGGACCCTGTCTGCAATGCCTGTG
Motif Score 3.622404762
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000379328.9; ENST00000461472.1; ENST00000346208.4; ENST00000645492.1
External Link RMBase: m6A_site_92149
mod ID: M6ASITE095382 Click to Show/Hide the Full List
mod site chr10:8073742-8073743:+ [9]
Sequence ATTGATCTTTGTTTAGATTAACAGACCCCTGACTATGAAGA
Motif Score 2.168095238
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000379328.9; ENST00000461472.1; ENST00000346208.4; ENST00000645492.1
External Link RMBase: m6A_site_92150
mod ID: M6ASITE095383 Click to Show/Hide the Full List
mod site chr10:8073746-8073747:+ [6]
Sequence ATCTTTGTTTAGATTAACAGACCCCTGACTATGAAGAAGGA
Motif Score 2.876744048
Cell/Tissue List HEK293T; A549; Huh7
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000645492.1; ENST00000346208.4; ENST00000379328.9; ENST00000461472.1
External Link RMBase: m6A_site_92151
mod ID: M6ASITE095384 Click to Show/Hide the Full List
mod site chr10:8073777-8073778:+ [6]
Sequence TGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCT
Motif Score 2.876744048
Cell/Tissue List HEK293T; A549; Huh7; Jurkat
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000379328.9; ENST00000461472.1; ENST00000346208.4; ENST00000645492.1
External Link RMBase: m6A_site_92152
mod ID: M6ASITE095385 Click to Show/Hide the Full List
mod site chr10:8073784-8073785:+ [6]
Sequence GGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAAT
Motif Score 2.185083333
Cell/Tissue List HEK293T; A549; Huh7; Jurkat
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000645492.1; ENST00000346208.4; ENST00000461472.1; ENST00000379328.9
External Link RMBase: m6A_site_92153
mod ID: M6ASITE095386 Click to Show/Hide the Full List
mod site chr10:8073841-8073842:+ [4]
Sequence AGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; GM12878; MT4; Huh7; Jurkat; CD4T
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000346208.4; ENST00000645492.1; ENST00000379328.9; ENST00000461472.1
External Link RMBase: m6A_site_92154
mod ID: M6ASITE095387 Click to Show/Hide the Full List
mod site chr10:8073853-8073854:+ [4]
Sequence ACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCG
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; A549; GM12878; MT4; Huh7; Jurkat; CD4T
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000461472.1; ENST00000379328.9; ENST00000346208.4; ENST00000645492.1
External Link RMBase: m6A_site_92155
mod ID: M6ASITE095388 Click to Show/Hide the Full List
mod site chr10:8073884-8073885:+ [4]
Sequence AACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCA
Motif Score 2.897386905
Cell/Tissue List HeLa; HEK293T; A549; GM12878; MT4; Huh7; Jurkat; CD4T
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000461472.1; ENST00000346208.4; ENST00000645492.1; ENST00000379328.9
External Link RMBase: m6A_site_92156
mod ID: M6ASITE095389 Click to Show/Hide the Full List
mod site chr10:8073983-8073984:+ [4]
Sequence CCATCCAGCCTGTCCTTTGGACCACACCACCCCTCCAGCAT
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; MT4; Huh7; Jurkat; CD4T
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000379328.9; ENST00000346208.4; ENST00000645492.1; ENST00000461472.1
External Link RMBase: m6A_site_92157
mod ID: M6ASITE095390 Click to Show/Hide the Full List
mod site chr10:8074214-8074215:+ [4]
Sequence GTTCCAACCACTGAATCTGGACCCCATCTGTGAATAAGCCA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; GM12878; Huh7; HEK293A-TOA; MSC; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000346208.4; ENST00000645492.1; ENST00000379328.9
External Link RMBase: m6A_site_92158
mod ID: M6ASITE095391 Click to Show/Hide the Full List
mod site chr10:8074258-8074259:+ [10]
Sequence TGACTCATATCCCCTATTTAACAGGGTCTCTAGTGCTGTGA
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T; CD8T
Seq Type List MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000379328.9; ENST00000645492.1; ENST00000346208.4
External Link RMBase: m6A_site_92159
mod ID: M6ASITE095392 Click to Show/Hide the Full List
mod site chr10:8074294-8074295:+ [4]
Sequence TGTGAAAAAAAAAATGCTGAACATTGCATATAACTTATATT
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; A549; GM12878; Huh7; HEK293A-TOA; MSC; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000645492.1; ENST00000346208.4; ENST00000379328.9
External Link RMBase: m6A_site_92160
mod ID: M6ASITE095393 Click to Show/Hide the Full List
mod site chr10:8074423-8074424:+ [4]
Sequence AGTGTGGAAATTAAGAAGAAACTAGGTCTGATATTCAAATG
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; Huh7; HEK293A-TOA; iSLK; MSC; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000645492.1; ENST00000379328.9; ENST00000346208.4
External Link RMBase: m6A_site_92161
mod ID: M6ASITE095394 Click to Show/Hide the Full List
mod site chr10:8074445-8074446:+ [4]
Sequence TAGGTCTGATATTCAAATGGACAAACTGCCAGTTTTGTTTC
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; Huh7; HEK293A-TOA; iSLK; MSC; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000379328.9; ENST00000645492.1; ENST00000346208.4
External Link RMBase: m6A_site_92162
mod ID: M6ASITE095395 Click to Show/Hide the Full List
mod site chr10:8074680-8074681:+ [8]
Sequence TAGGCCTACATGCTTTGTGAACAAGTCCCTGTAATTGTTGT
Motif Score 2.951386905
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000346208.4; ENST00000379328.9; ENST00000645492.1
External Link RMBase: m6A_site_92163
mod ID: M6ASITE095396 Click to Show/Hide the Full List
mod site chr10:8074762-8074763:+ [9]
Sequence GATTTATTTCATCATATTATACAGACCGAACTGTTGTATAA
Motif Score 2.110482143
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000346208.4; ENST00000379328.9; ENST00000645492.1
External Link RMBase: m6A_site_92164
mod ID: M6ASITE095397 Click to Show/Hide the Full List
mod site chr10:8074766-8074767:+ [8]
Sequence TATTTCATCATATTATACAGACCGAACTGTTGTATAAATTT
Motif Score 2.876744048
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000379328.9; ENST00000346208.4; ENST00000645492.1
External Link RMBase: m6A_site_92165
mod ID: M6ASITE095398 Click to Show/Hide the Full List
mod site chr10:8074771-8074772:+ [8]
Sequence CATCATATTATACAGACCGAACTGTTGTATAAATTTATTTA
Motif Score 3.373380952
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000645492.1; ENST00000346208.4; ENST00000379328.9
External Link RMBase: m6A_site_92166
mod ID: M6ASITE095399 Click to Show/Hide the Full List
mod site chr10:8074807-8074808:+ [8]
Sequence ATTTACTGCTAGTCTTAAGAACTGCTTTCTTTCGTTTGTTT
Motif Score 3.373380952
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000346208.4; ENST00000645492.1; ENST00000379328.9
External Link RMBase: m6A_site_92167