m6A Target Gene Information
General Information of the m6A Target Gene (ID: M6ATAR00166)
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
ABCD1
can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
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Methyltransferase-like 3 (METTL3) [WRITER]
| Representative RNA-seq result indicating the expression of this target gene regulated by METTL3 | ||
| Cell Line | MOLM-13 cell line | Homo sapiens |
|
Treatment: shMETTL3 MOLM13 cells
Control: MOLM13 cells
|
GSE98623 | |
| Regulation |
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logFC: -9.42E-01 p-value: 1.69E-05 |
| More Results | Click to View More RNA-seq Results | |
| Representative RIP-seq result supporting the interaction between ABCD1 and the regulator | ||
| Cell Line | MDA-MB-231 | Homo sapiens |
| Regulation | logFC: 8.82E+00 | GSE60213 |
| In total 1 item(s) under this regulator | ||||
| Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene | [1] | |||
| Response Summary | Knockdown of METTL3 in clear cell renal cell carcinoma cell line impaired both cell migration capacity and tumor spheroid formation in soft fibrin gel, a mechanical method for selecting stem-cell-like tumorigenic cells. METTL3 knockdown cells and functional studies confirmed that translation of ATP-binding cassette sub-family D member 1 (ABCD1). | |||
| Target Regulation | Up regulation | |||
| Responsed Disease | Renal cell carcinoma of kidney | ICD-11: 2C90.0 | ||
| Pathway Response | ABC transporters | hsa02010 | ||
| Cell Process | Cell migration and spheroid formation | |||
| In-vitro Model | 786-O | Renal cell carcinoma | Homo sapiens | CVCL_1051 |
| A-498 | Renal cell carcinoma | Homo sapiens | CVCL_1056 | |
| In-vivo Model | A498 cells (1 × 106 cells) were resuspended in 100 uL of PBS and subcutaneously injected into the axillary fossa of nude mice (BALB/c-nude, 4 weeks old). | |||
Renal cell carcinoma [ICD-11: 2C90]
| In total 1 item(s) under this disease | ||||
| Experiment 1 Reporting the m6A-centered Disease Response | [1] | |||
| Response Summary | Knockdown of METTL3 in clear cell renal cell carcinoma cell line impaired both cell migration capacity and tumor spheroid formation in soft fibrin gel, a mechanical method for selecting stem-cell-like tumorigenic cells. METTL3 knockdown cells and functional studies confirmed that translation of ATP-binding cassette sub-family D member 1 (ABCD1). | |||
| Responsed Disease | Renal cell carcinoma of kidney [ICD-11: 2C90.0] | |||
| Target Regulator | Methyltransferase-like 3 (METTL3) | WRITER | ||
| Target Regulation | Up regulation | |||
| Pathway Response | ABC transporters | hsa02010 | ||
| Cell Process | Cell migration and spheroid formation | |||
| In-vitro Model | 786-O | Renal cell carcinoma | Homo sapiens | CVCL_1051 |
| A-498 | Renal cell carcinoma | Homo sapiens | CVCL_1056 | |
| In-vivo Model | A498 cells (1 × 106 cells) were resuspended in 100 uL of PBS and subcutaneously injected into the axillary fossa of nude mice (BALB/c-nude, 4 weeks old). | |||
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00166)
| In total 2 m6A sequence/site(s) in this target gene | |||
| mod ID: M5CSITE004614 | Click to Show/Hide the Full List | ||
| mod site | chrX:153737241-153737242:+ | ||
| Sequence | GAGGTGGTGGTGGCCAGCCTCAACATCAGGGTAGGTCCAGC | ||
| Cell/Tissue List | T24 | ||
| Seq Type List | Bisulfite-seq | ||
| Transcript ID List | ENST00000443684.2; ENST00000218104.6 | ||
| External Link | RMBase: m5C_site_45585 | ||
| mod ID: M5CSITE004615 | Click to Show/Hide the Full List | ||
| mod site | chrX:153744654-153744655:+ | [2] | |
| Sequence | AGCGCCTGCCCGAGAGAGACCCCACCGCCACCGTGTGCCTT | ||
| Seq Type List | Bisulfite-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m5C_site_45586 | ||
N6-methyladenosine (m6A)
| In total 31 m6A sequence/site(s) in this target gene | |||
| mod ID: M6ASITE093827 | Click to Show/Hide the Full List | ||
| mod site | chrX:153724974-153724975:+ | [3] | |
| Sequence | AGACGCCCCCTCTGCCCGAGACCTCTCAAGGCCCTGACCTC | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | HeLa; HepG2; A549; HEK293T; H1A; H1B; hNPCs; hESCs; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876845 | ||
| mod ID: M6ASITE093828 | Click to Show/Hide the Full List | ||
| mod site | chrX:153725011-153725012:+ | [4] | |
| Sequence | CCTCAGGGGCCAGGGCACTGACAGGACAGGAGAGCCAAGTT | ||
| Motif Score | 2.859755952 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876846 | ||
| mod ID: M6ASITE093829 | Click to Show/Hide the Full List | ||
| mod site | chrX:153725016-153725017:+ | [3] | |
| Sequence | GGGGCCAGGGCACTGACAGGACAGGAGAGCCAAGTTCCTCC | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876847 | ||
| mod ID: M6ASITE093830 | Click to Show/Hide the Full List | ||
| mod site | chrX:153725164-153725165:+ | [3] | |
| Sequence | CAAGGTTTCCAGTTGCCTAGACAACAGGCCCAGGGTCAGAG | ||
| Motif Score | 2.897386905 | ||
| Cell/Tissue List | HeLa; HepG2; HEK293T; A549; H1A; H1B; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876848 | ||
| mod ID: M6ASITE093831 | Click to Show/Hide the Full List | ||
| mod site | chrX:153725303-153725304:+ | [3] | |
| Sequence | GCCCCGGCCCTGGCGGGGGAACACGCTGAAGCGCACGGCCG | ||
| Motif Score | 2.951386905 | ||
| Cell/Tissue List | HeLa; HepG2; MM6; CD4T; peripheral-blood; GSC-11; HEK293T; HEK293A-TOA; iSLK; TREX; endometrial; HEC-1-A; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876849 | ||
| mod ID: M6ASITE093832 | Click to Show/Hide the Full List | ||
| mod site | chrX:153725468-153725469:+ | [3] | |
| Sequence | GGCGGCCAAAGCTGGCATGAACCGGGTATTCCTGCAGCGGC | ||
| Motif Score | 2.930744048 | ||
| Cell/Tissue List | HeLa; HepG2; MM6; GSC-11; HEK293T; HEK293A-TOA; TREX; iSLK; MSC; TIME | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876850 | ||
| mod ID: M6ASITE093833 | Click to Show/Hide the Full List | ||
| mod site | chrX:153725642-153725643:+ | [3] | |
| Sequence | CCGCTGCATCGTCCGCAAGGACCCGCGGGCTTTTGGCTGGC | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa; HepG2; HEK293T; H1B; hESCs; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TREX; TIME; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876851 | ||
| mod ID: M6ASITE093834 | Click to Show/Hide the Full List | ||
| mod site | chrX:153725800-153725801:+ | [3] | |
| Sequence | GCCTCTACTTCTCCCAGCAGACCTACTACCGGGTCAGCAAC | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | HeLa; HepG2; HEK293T; A549; GM12878; MM6; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876852 | ||
| mod ID: M6ASITE093835 | Click to Show/Hide the Full List | ||
| mod site | chrX:153725819-153725820:+ | [4] | |
| Sequence | GACCTACTACCGGGTCAGCAACATGGACGGGCGGCTTCGCA | ||
| Motif Score | 2.173910714 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000370129.4; ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876853 | ||
| mod ID: M6ASITE093836 | Click to Show/Hide the Full List | ||
| mod site | chrX:153725945-153725946:+ | [4] | |
| Sequence | GGACGTGGCTGTGACTTCCTACACCCTGCTTCGGGCGGCCC | ||
| Motif Score | 2.078666667 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000218104.6; ENST00000370129.4 | ||
| External Link | RMBase: m6A_site_876854 | ||
| mod ID: M6ASITE093837 | Click to Show/Hide the Full List | ||
| mod site | chrX:153729265-153729266:+ | [3] | |
| Sequence | GCTACAGCGCTCCTACCAGGACCTGGCCTCGCAGATCAACC | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000218104.6; ENST00000370129.4 | ||
| External Link | RMBase: m6A_site_876855 | ||
| mod ID: M6ASITE093838 | Click to Show/Hide the Full List | ||
| mod site | chrX:153729417-153729418:+ | [5] | |
| Sequence | GCTACTCAGAGTCAGGTGAGACCCAGGGCTCCAAGAGGATC | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000370129.4; ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876856 | ||
| mod ID: M6ASITE093839 | Click to Show/Hide the Full List | ||
| mod site | chrX:153729636-153729637:+ | [3] | |
| Sequence | CGCCCTTTGTTACCACTCAGACAAGCCCAGGACTGCAAGTC | ||
| Motif Score | 2.897386905 | ||
| Cell/Tissue List | HeLa; HEK293T; H1B; HEK293A-TOA; iSLK; MSC; TREX | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000370129.4; ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876857 | ||
| mod ID: M6ASITE093840 | Click to Show/Hide the Full List | ||
| mod site | chrX:153729647-153729648:+ | [3] | |
| Sequence | ACCACTCAGACAAGCCCAGGACTGCAAGTCAGGAACACTAC | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | HeLa; HEK293T; H1B; HEK293A-TOA; iSLK; MSC; TREX | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000370129.4; ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876858 | ||
| mod ID: M6ASITE093841 | Click to Show/Hide the Full List | ||
| mod site | chrX:153729661-153729662:+ | [3] | |
| Sequence | CCCAGGACTGCAAGTCAGGAACACTACATGTCACTTCTCCA | ||
| Motif Score | 2.951386905 | ||
| Cell/Tissue List | HeLa; HEK293T; HepG2; H1B; HEK293A-TOA; iSLK; MSC; TREX | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000370129.4; ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876859 | ||
| mod ID: M6ASITE093842 | Click to Show/Hide the Full List | ||
| mod site | chrX:153729806-153729807:+ | [3] | |
| Sequence | CTTGGTTTCCTCGCCCTGAAACAGCTCTTGCACCCTAAGGT | ||
| Motif Score | 2.20572619 | ||
| Cell/Tissue List | HeLa; HEK293T; HEK293A-TOA | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6; ENST00000370129.4 | ||
| External Link | RMBase: m6A_site_876860 | ||
| mod ID: M6ASITE093843 | Click to Show/Hide the Full List | ||
| mod site | chrX:153736464-153736465:+ | [3] | |
| Sequence | ACGCTCAGGCGGGGTCTGGGACCATAGGCCGGTCTGGTGTC | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa; HepG2; peripheral-blood; endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000443684.2; ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876869 | ||
| mod ID: M6ASITE093844 | Click to Show/Hide the Full List | ||
| mod site | chrX:153737175-153737176:+ | [3] | |
| Sequence | GGCCAGGTGGTGGATGTGGAACAGGGGATCATCTGCGAGAA | ||
| Motif Score | 2.951386905 | ||
| Cell/Tissue List | HeLa; HepG2; peripheral-blood; MM6 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000443684.2; ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876870 | ||
| mod ID: M6ASITE093845 | Click to Show/Hide the Full List | ||
| mod site | chrX:153737195-153737196:+ | [3] | |
| Sequence | ACAGGGGATCATCTGCGAGAACATCCCCATCGTCACGCCCT | ||
| Motif Score | 2.951386905 | ||
| Cell/Tissue List | HeLa; HepG2; peripheral-blood; MM6 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000443684.2; ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876871 | ||
| mod ID: M6ASITE093846 | Click to Show/Hide the Full List | ||
| mod site | chrX:153740620-153740621:+ | [3] | |
| Sequence | TGACCAGGTGATCTACCCGGACTCAGTGGAGGACATGCAAA | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | HeLa; HepG2 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876876 | ||
| mod ID: M6ASITE093847 | Click to Show/Hide the Full List | ||
| mod site | chrX:153740632-153740633:+ | [3] | |
| Sequence | CTACCCGGACTCAGTGGAGGACATGCAAAGGAAGGGCTACT | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | HeLa; HepG2 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876877 | ||
| mod ID: M6ASITE093848 | Click to Show/Hide the Full List | ||
| mod site | chrX:153740662-153740663:+ | [3] | |
| Sequence | GAAGGGCTACTCGGAGCAGGACCTGGAAGCCATCCTGGACG | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa; HepG2; peripheral-blood; endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876878 | ||
| mod ID: M6ASITE093849 | Click to Show/Hide the Full List | ||
| mod site | chrX:153743550-153743551:+ | [3] | |
| Sequence | CTGGAAGTTCGAGAAGCTGGACTCAGCTGCCCGCCTGAGCC | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | HeLa; HepG2; HEC-1-A | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876879 | ||
| mod ID: M6ASITE093850 | Click to Show/Hide the Full List | ||
| mod site | chrX:153743788-153743789:+ | [3] | |
| Sequence | GCTCGGATCACATGAAGGAGACAGCAGCACCCACCCATGCA | ||
| Motif Score | 2.897386905 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876880 | ||
| mod ID: M6ASITE093851 | Click to Show/Hide the Full List | ||
| mod site | chrX:153743849-153743850:+ | [3] | |
| Sequence | CTGGCCCCTCCTCCTAGAAAACCCTTCCCGCCCTCGGGAAA | ||
| Motif Score | 2.185083333 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876881 | ||
| mod ID: M6ASITE093852 | Click to Show/Hide the Full List | ||
| mod site | chrX:153744099-153744100:+ | [3] | |
| Sequence | CAGGTGGCCTCCCTCCAGAGACTCGAGTCCCCATGATTCCC | ||
| Motif Score | 3.319380952 | ||
| Cell/Tissue List | HeLa; MM6; peripheral-blood; HEK293A-TOA; iSLK; MSC; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876882 | ||
| mod ID: M6ASITE093853 | Click to Show/Hide the Full List | ||
| mod site | chrX:153744140-153744141:+ | [3] | |
| Sequence | TCCTCGTCAGTCTCTCAAAGACCCCATGGTCCATCCCCTGA | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | HeLa; HepG2; MM6; iSLK; MSC; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876883 | ||
| mod ID: M6ASITE093854 | Click to Show/Hide the Full List | ||
| mod site | chrX:153744216-153744217:+ | [3] | |
| Sequence | CATAAAAGCCGCCCAGTGGGACCCACAGTCACACAGAGCGC | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa; MM6; MSC | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876884 | ||
| mod ID: M6ASITE093855 | Click to Show/Hide the Full List | ||
| mod site | chrX:153744485-153744486:+ | [3] | |
| Sequence | CCGGCTCCCACCGGTGCCAAACCCAGCCCCTGCGGCCGTCA | ||
| Motif Score | 2.185083333 | ||
| Cell/Tissue List | HeLa; MSC | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876885 | ||
| mod ID: M6ASITE093856 | Click to Show/Hide the Full List | ||
| mod site | chrX:153744574-153744575:+ | [3] | |
| Sequence | CTTGCCAGCCAGGAGTGCGGACACCATGTTCCCAGCTCAGT | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | HeLa; MM6; endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876886 | ||
| mod ID: M6ASITE093857 | Click to Show/Hide the Full List | ||
| mod site | chrX:153744652-153744653:+ | [3] | |
| Sequence | CCAGCGCCTGCCCGAGAGAGACCCCACCGCCACCGTGTGCC | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | HeLa; MM6 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000218104.6 | ||
| External Link | RMBase: m6A_site_876887 | ||
References

