General Information of the m6A Target Gene (ID: M6ATAR00159)
Target Name eIF4E-binding protein 1 (4EBP1/EIF4EBP1)
Synonyms
4E-BP1; eIF4E-binding protein 1; Phosphorylated heat- and acid-stable protein regulated by insulin 1; PHAS-I
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Gene Name EIF4EBP1
Chromosomal Location 8p11.23
Family eIF4E-binding protein family
Function
Repressor of translation initiation that regulates EIF4E activity by preventing its assembly into the eIF4F complex: hypophosphorylated form competes with EIF4G1/EIF4G3 and strongly binds to EIF4E, leading to repress translation. In contrast, hyperphosphorylated form dissociates from EIF4E, allowing interaction between EIF4G1/EIF4G3 and EIF4E, leading to initiation of translation. Mediates the regulation of protein translation by hormones, growth factors and other stimuli that signal through the MAP kinase and mTORC1 pathways.
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Gene ID 1978
Uniprot ID
4EBP1_HUMAN
HGNC ID
HGNC:3288
KEGG ID
hsa:1978
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
EIF4EBP1 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
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Methyltransferase-like 3 (METTL3) [WRITER]
Representative RNA-seq result indicating the expression of this target gene regulated by METTL3
Cell Line MOLM-13 cell line Homo sapiens
Treatment: shMETTL3 MOLM13 cells
Control: MOLM13 cells
GSE98623
Regulation
logFC: 8.71E-01
p-value: 3.32E-08
More Results Click to View More RNA-seq Results
Representative RIP-seq result supporting the interaction between EIF4EBP1 and the regulator
Cell Line MDA-MB-231 Homo sapiens
Regulation logFC: 9.71E+00 GSE60213
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary METTL3 promotes the progression of retinoblastoma through PI3K/AKT/mTOR pathways in vitro and in vivo. METTL3 has an impact on the PI3K-AKT-mTOR-P70S6K/eIF4E-binding protein 1 (4EBP1/EIF4EBP1) pathway. The cell proliferation results show that the stimulatory function of METTL3 is lost after rapamycin treatment.
Target Regulation Down regulation
Responsed Disease Retinoblastoma ICD-11: 2D02.2
Responsed Drug Rapamycin Approved
Pathway Response PI3K-Akt signaling pathway hsa04151
mTOR signaling pathway hsa04150
Cell Process Cell proliferation
Cell migration
Cell invasion
Cell apoptosis
In-vitro Model WERI-Rb-1 Retinoblastoma Homo sapiens CVCL_1792
Y-79 Retinoblastoma Homo sapiens CVCL_1893
In-vivo Model To establish a subcutaneous tumour model in nude mice, 2 × 107 Y79 cells (METTL3 knockdown group: shNC, shRNA1 and shRNA2; METTL3 up-regulated group: NC and METLL3) were resuspended in 1 mL of pre-cooled PBS, and 200 uL of the cell suspension was injected subcutaneously into the left side of the armpit to investigate tumour growth (4 × 106 per mouse).
RNA demethylase ALKBH5 (ALKBH5) [ERASER]
Representative RNA-seq result indicating the expression of this target gene regulated by ALKBH5
Cell Line MOLM-13 cell line Homo sapiens
Treatment: shALKBH5 MOLM-13 cells
Control: shNS MOLM-13 cells
GSE144968
Regulation
logFC: -7.12E-01
p-value: 2.44E-03
More Results Click to View More RNA-seq Results
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [2]
Response Summary Bioactive peptides can inhibit acute myeloid leukemia cell proliferation by downregulating ALKBH5-mediated m6A demethylation of eIF4E-binding protein 1 (4EBP1/EIF4EBP1) and MLST8 mRNAs, which have potential to prevent and treat this disease.
Target Regulation Up regulation
Responsed Disease Acute myeloid leukaemia ICD-11: 2A60
Cell Process Cell apoptosis
In-vitro Model MV4-11 Childhood acute monocytic leukemia Homo sapiens CVCL_0064
HL-60 Adult acute myeloid leukemia Homo sapiens CVCL_0002
HEK293T Normal Homo sapiens CVCL_0063
In-vivo Model HL-60 cells (1 × 107) suspended in 0.1 ml PBS containing 50% Matrigel were subcutaneously injected into the flanks of the mice. When tumor sizes reached 200 mm3, the mice were randomly distributed into four groups with the indicated dosages of saline, cytarabine and BP alone or in combination. For BP injections, the solution was delivered intraperitoneally at 106 ug/kg body weight for the first 8 consecutive days. For cytarabine injections, the solution was delivered intraperitoneally at 100 mg/kg body weight three times (once every three days). The combination group was administered intraperitoneally three times (once every three days) with the same dosages as described above. The control group was treated with an equivalent amount of saline.
Acute myeloid leukaemia [ICD-11: 2A60]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [2]
Response Summary Bioactive peptides can inhibit acute myeloid leukemia cell proliferation by downregulating ALKBH5-mediated m6A demethylation of eIF4E-binding protein 1 (4EBP1/EIF4EBP1) and MLST8 mRNAs, which have potential to prevent and treat this disease.
Responsed Disease Acute myeloid leukaemia [ICD-11: 2A60]
Target Regulator RNA demethylase ALKBH5 (ALKBH5) ERASER
Target Regulation Up regulation
Cell Process Cell apoptosis
In-vitro Model MV4-11 Childhood acute monocytic leukemia Homo sapiens CVCL_0064
HL-60 Adult acute myeloid leukemia Homo sapiens CVCL_0002
HEK293T Normal Homo sapiens CVCL_0063
In-vivo Model HL-60 cells (1 × 107) suspended in 0.1 ml PBS containing 50% Matrigel were subcutaneously injected into the flanks of the mice. When tumor sizes reached 200 mm3, the mice were randomly distributed into four groups with the indicated dosages of saline, cytarabine and BP alone or in combination. For BP injections, the solution was delivered intraperitoneally at 106 ug/kg body weight for the first 8 consecutive days. For cytarabine injections, the solution was delivered intraperitoneally at 100 mg/kg body weight three times (once every three days). The combination group was administered intraperitoneally three times (once every three days) with the same dosages as described above. The control group was treated with an equivalent amount of saline.
Retina cancer [ICD-11: 2D02]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary METTL3 promotes the progression of retinoblastoma through PI3K/AKT/mTOR pathways in vitro and in vivo. METTL3 has an impact on the PI3K-AKT-mTOR-P70S6K/eIF4E-binding protein 1 (4EBP1/EIF4EBP1) pathway. The cell proliferation results show that the stimulatory function of METTL3 is lost after rapamycin treatment.
Responsed Disease Retinoblastoma [ICD-11: 2D02.2]
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Down regulation
Responsed Drug Rapamycin Approved
Pathway Response PI3K-Akt signaling pathway hsa04151
mTOR signaling pathway hsa04150
Cell Process Cell proliferation
Cell migration
Cell invasion
Cell apoptosis
In-vitro Model WERI-Rb-1 Retinoblastoma Homo sapiens CVCL_1792
Y-79 Retinoblastoma Homo sapiens CVCL_1893
In-vivo Model To establish a subcutaneous tumour model in nude mice, 2 × 107 Y79 cells (METTL3 knockdown group: shNC, shRNA1 and shRNA2; METTL3 up-regulated group: NC and METLL3) were resuspended in 1 mL of pre-cooled PBS, and 200 uL of the cell suspension was injected subcutaneously into the left side of the armpit to investigate tumour growth (4 × 106 per mouse).
Rapamycin [Approved]
In total 1 item(s) under this drug
Experiment 1 Reporting the m6A-centered Drug Response [1]
Response Summary METTL3 promotes the progression of retinoblastoma through PI3K/AKT/mTOR pathways in vitro and in vivo. METTL3 has an impact on the PI3K-AKT-mTOR-P70S6K/eIF4E-binding protein 1 (4EBP1/EIF4EBP1) pathway. The cell proliferation results show that the stimulatory function of METTL3 is lost after rapamycin treatment.
Target Regulator Methyltransferase-like 3 (METTL3) WRITER
Target Regulation Down regulation
Responsed Disease Retinoblastoma ICD-11: 2D02.2
Pathway Response PI3K-Akt signaling pathway hsa04151
mTOR signaling pathway hsa04150
Cell Process Cell proliferation
Cell migration
Cell invasion
Cell apoptosis
In-vitro Model WERI-Rb-1 Retinoblastoma Homo sapiens CVCL_1792
Y-79 Retinoblastoma Homo sapiens CVCL_1893
In-vivo Model To establish a subcutaneous tumour model in nude mice, 2 × 107 Y79 cells (METTL3 knockdown group: shNC, shRNA1 and shRNA2; METTL3 up-regulated group: NC and METLL3) were resuspended in 1 mL of pre-cooled PBS, and 200 uL of the cell suspension was injected subcutaneously into the left side of the armpit to investigate tumour growth (4 × 106 per mouse).
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Histone modification
m6A Regulator: RNA demethylase ALKBH5 (ALKBH5)
In total 5 item(s) under this m6A regulator
Crosstalk ID: M6ACROT03257
Epigenetic Regulator Lysine-specific demethylase 4C (KDM4C)
Regulated Target Histone H3 lysine 9 trimethylation (H3K9me3)
Crosstalk relationship Histone modification → m6A
Disease Acute myeloid leukaemia
Crosstalk ID: M6ACROT03261
Epigenetic Regulator Histone-lysine N-methyltransferase 2A (KMT2A)
Regulated Target Histone H3 lysine 4 trimethylation (H3K4me3)
Crosstalk relationship Histone modification → m6A
Disease Acute myeloid leukaemia
Crosstalk ID: M6ACROT03265
Epigenetic Regulator Histone-lysine N-methyltransferase 2C (KMT2C)
Regulated Target Histone H3 lysine 4 trimethylation (H3K4me3)
Crosstalk relationship Histone modification → m6A
Disease Acute myeloid leukaemia
Crosstalk ID: M6ACROT03269
Epigenetic Regulator Lysine-specific demethylase 4B (KDM4B)
Regulated Target Histone H3 lysine 9 trimethylation (H3K9me3)
Crosstalk relationship Histone modification → m6A
Disease Acute myeloid leukaemia
Crosstalk ID: M6ACROT03273
Epigenetic Regulator Probable JmjC domain-containing histone demethylation protein 2C (JMJD1C)
Regulated Target Histone H3 lysine 9 trimethylation (H3K9me3)
Crosstalk relationship Histone modification → m6A
Disease Acute myeloid leukaemia
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00159)
eIF4E-binding protein 1 (4EBP1/EIF4EBP1)
Adenosine-to-Inosine editing (A-to-I)
In total 4 m6A sequence/site(s) in this target gene
mod ID: A2ISITE002517 Click to Show/Hide the Full List
mod site chr8:38041330-38041331:+ [3]
Sequence CAGGCTGGTCTCGAACTTCTAACCTCAGGCGATCTGCCTGC
Transcript ID List ENST00000338825.5
External Link RMBase: RNA-editing_site_130352
mod ID: A2ISITE002518 Click to Show/Hide the Full List
mod site chr8:38041331-38041332:+ [3]
Sequence AGGCTGGTCTCGAACTTCTAACCTCAGGCGATCTGCCTGCC
Transcript ID List ENST00000338825.5
External Link RMBase: RNA-editing_site_130353
mod ID: A2ISITE002519 Click to Show/Hide the Full List
mod site chr8:38042848-38042849:+ [3]
Sequence CAAGGCGGGCAGATCGCTTGAGGTCAGGAGTTCAAGACCAG
Transcript ID List ENST00000338825.5; rmsk_2492715
External Link RMBase: RNA-editing_site_130354
mod ID: A2ISITE002520 Click to Show/Hide the Full List
mod site chr8:38053342-38053343:+ [3]
Sequence TTTTGTTTTGTTTTGTTTTGAGACAGGGTCTTGTTCTGTCG
Transcript ID List ENST00000338825.5; ENST00000520657.1
External Link RMBase: RNA-editing_site_130355
N6-methyladenosine (m6A)
In total 16 m6A sequence/site(s) in this target gene
mod ID: M6ASITE084562 Click to Show/Hide the Full List
mod site chr8:38030570-38030571:+ [4]
Sequence GCGGGTGCAGCGCACAGGAGACCATGTCCGGGGGCAGCAGC
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; A549; H1B; H1A; hESCs; fibroblasts; H1299; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000338825.5
External Link RMBase: m6A_site_793852
mod ID: M6ASITE084563 Click to Show/Hide the Full List
mod site chr8:38030600-38030601:+ [4]
Sequence GGGGCAGCAGCTGCAGCCAGACCCCAAGCCGGGCCATCCCC
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; A549; hESCs; fibroblasts; H1299; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000338825.5
External Link RMBase: m6A_site_793853
mod ID: M6ASITE084564 Click to Show/Hide the Full List
mod site chr8:38030670-38030671:+ [4]
Sequence CGTGCAGCTCCCGCCCGGGGACTACAGCACGACCCCCGGCG
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; A549; fibroblasts; H1299; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000338825.5
External Link RMBase: m6A_site_793854
mod ID: M6ASITE084565 Click to Show/Hide the Full List
mod site chr8:38047375-38047376:+ [4]
Sequence GAAAAAAGGATTGAGCAAAGACCGGCAAATATGTGGGTAAG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; A549; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; MSC; TREX; iSLK; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000520657.1; ENST00000338825.5
External Link RMBase: m6A_site_793855
mod ID: M6ASITE084566 Click to Show/Hide the Full List
mod site chr8:38057125-38057126:+ [4]
Sequence ATTCCTGATGGAGTGTCGGAACTCACCTGTGACCAAAACAC
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; A549; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; TREX; iSLK; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000338825.5; ENST00000520657.1
External Link RMBase: m6A_site_793856
mod ID: M6ASITE084567 Click to Show/Hide the Full List
mod site chr8:38057142-38057143:+ [4]
Sequence GGAACTCACCTGTGACCAAAACACCCCCAAGGGATCTGCCC
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; A549; hESC-HEK293T; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; TREX; iSLK; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000338825.5; ENST00000520657.1
External Link RMBase: m6A_site_793857
mod ID: M6ASITE084568 Click to Show/Hide the Full List
mod site chr8:38057224-38057225:+ [5]
Sequence CATGGAAGCCAGCCAGAGCCACCTGCGCAATAGCCCAGAAG
Motif Score 2.032470238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000520657.1; ENST00000338825.5
External Link RMBase: m6A_site_793858
mod ID: M6ASITE084569 Click to Show/Hide the Full List
mod site chr8:38059927-38059928:+ [4]
Sequence AGAGTCACAGTTTGAGATGGACATTTAAAGCACCAGCCATC
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; A549; hESC-HEK293T; HepG2; hNPCs; hESCs; fibroblasts; LCLs; H1299; MM6; Huh7; peripheral-blood; TREX; endometrial; HEC-1-A; AML
Seq Type List m6A-seq; MeRIP-seq; m6A-REF-seq; MAZTER-seq; miCLIP
Transcript ID List ENST00000338825.5; ENST00000520657.1
External Link RMBase: m6A_site_793859
mod ID: M6ASITE084570 Click to Show/Hide the Full List
mod site chr8:38060053-38060054:+ [4]
Sequence AGGCGTTGGCGTGGGGTCGGACACCCCAGCCCTTTCTCCCT
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; HEK293T; kidney; hESC-HEK293T; hESCs; A549; H1299; MM6; Huh7; peripheral-blood; iSLK; TIME; TREX; endometrial; HEC-1-A; AML
Seq Type List m6A-seq; MeRIP-seq; m6A-REF-seq; DART-seq; MAZTER-seq; miCLIP
Transcript ID List ENST00000338825.5; ENST00000520657.1
External Link RMBase: m6A_site_793860
mod ID: M6ASITE084571 Click to Show/Hide the Full List
mod site chr8:38060075-38060076:+ [5]
Sequence ACCCCAGCCCTTTCTCCCTCACTCAGGGCACCTGCCCCCTC
Motif Score 2.469291667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000520657.1; ENST00000338825.5
External Link RMBase: m6A_site_793861
mod ID: M6ASITE084572 Click to Show/Hide the Full List
mod site chr8:38060106-38060107:+ [4]
Sequence CTGCCCCCTCCTCTTCGTGAACACCAGCAGATACCTCCTTG
Motif Score 2.951386905
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hESC-HEK293T; hESCs; fibroblasts; H1299; MM6; Huh7; peripheral-blood; iSLK; TIME; TREX; MSC; endometrial; HEC-1-A; NB4; AML
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; miCLIP
Transcript ID List ENST00000338825.5; ENST00000520657.1
External Link RMBase: m6A_site_793862
mod ID: M6ASITE084573 Click to Show/Hide the Full List
mod site chr8:38060118-38060119:+ [5]
Sequence CTTCGTGAACACCAGCAGATACCTCCTTGTGCCTCCACTGA
Motif Score 2.089839286
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000338825.5; ENST00000520657.1
External Link RMBase: m6A_site_793863
mod ID: M6ASITE084574 Click to Show/Hide the Full List
mod site chr8:38060179-38060180:+ [6]
Sequence GGGGAGTGACCCCTGCCAGCACACCCTGCAGCCAAGGGCCA
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000338825.5; ENST00000520657.1
External Link RMBase: m6A_site_793864
mod ID: M6ASITE084575 Click to Show/Hide the Full List
mod site chr8:38060208-38060209:+ [4]
Sequence AGCCAAGGGCCAGGAAGTGGACAAGAACGAACCCTTCCTTC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hESC-HEK293T; H1A; hESCs; fibroblasts; LCLs; H1299; MM6; Huh7; CD4T; peripheral-blood; iSLK; TIME; TREX; MSC; endometrial; HEC-1-A; NB4; AML
Seq Type List m6A-seq; MeRIP-seq; m6A-REF-seq; MAZTER-seq; miCLIP
Transcript ID List ENST00000338825.5; ENST00000520657.1
External Link RMBase: m6A_site_793865
mod ID: M6ASITE084576 Click to Show/Hide the Full List
mod site chr8:38060214-38060215:+ [5]
Sequence GGGCCAGGAAGTGGACAAGAACGAACCCTTCCTTCCGAATG
Motif Score 2.925321429
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000520657.1; ENST00000338825.5
External Link RMBase: m6A_site_793866
mod ID: M6ASITE084577 Click to Show/Hide the Full List
mod site chr8:38060218-38060219:+ [4]
Sequence CAGGAAGTGGACAAGAACGAACCCTTCCTTCCGAATGATCA
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; HEK293T; A549; H1A; hESCs; fibroblasts; LCLs; H1299; MM6; Huh7; CD4T; peripheral-blood; iSLK; TIME; TREX; MSC; endometrial; HEC-1-A; NB4; AML
Seq Type List m6A-seq; MeRIP-seq; miCLIP
Transcript ID List ENST00000338825.5; ENST00000520657.1
External Link RMBase: m6A_site_793867