m6A-centered Crosstalk Information
Mechanism of Crosstalk between m6A Modification and Epigenetic Regulation
| Crosstalk ID |
M6ACROT03323
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[1], [2] | |||
Histone modification
H3K9me1
JMJD1C
hsa-miR-302a
Indirect
Inhibition
m6A modification
Circ_EPHB4
Circ_EPHB4
METTL3
Methylation
: m6A sites
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| m6A Modification: | |||||
|---|---|---|---|---|---|
| m6A Regulator | Methyltransferase-like 3 (METTL3) | WRITER | |||
| m6A Target | Circ_EPHB4 | ||||
| Epigenetic Regulation that have Cross-talk with This m6A Modification: | |||||
| Epigenetic Regulation Type | Histone modification (HistMod) | ||||
| Epigenetic Regulator | Probable JmjC domain-containing histone demethylation protein 2C (JMJD1C) | ERASER | View Details | ||
| Regulated Target | Histone H3 lysine 9 monomethylation (H3K9me1) | View Details | |||
| Downstream Gene | hsa-miR-302a | View Details | |||
| Crosstalk Relationship | Histone modification → m6A | Inhibition | |||
| Crosstalk Mechanism | histone modification indirectly regulates m6A modification through downstream signaling pathways | ||||
| Crosstalk Summary | JMJD1C increased MIR302A expression through promoting Histone H3 lysine 9 monomethylation (H3K9me1) demethylation at the miR-302a promoter region. miR-302a was identified to target METTL3, which could inhibit SOCS2 expression via m6A modification. Methyltransferase MELLT3 upregulated m6A modification of Circ_EPHB4, and YTHDC1 promoted cytoplasmic localization of m6A-modified CircEPHB4. Overexpression of wild-type CircEPHB4 enhanced glioma cells' stemness, metastasis, and proliferation. Cytoplasmic CircEPHB4 increased SOX2 mRNA stability by binding to IGF2BP2, and the effects observed by SOX2 knockdown were reversed by CircEPHB4 in glioma cells. | ||||
| Responsed Disease | Brain cancer | ICD-11: 2A00 | |||
| Pathway Response | Transcriptional misregulation in cancer | hsa05202 | |||
| Cell Process | RNA stability | ||||
In-vitro Model |
LN-229 | Glioblastoma | Homo sapiens | CVCL_0393 | |
| LN-18 | Glioblastoma | Homo sapiens | CVCL_0392 | ||
| In-vivo Model | Mice were subcutaneously injected with 2.5 × 106 U251 cells stably infected with OE-NC, OE-JMJD1C, OE-NC and sh-NC, OE-JMJD1C and sh-NC or OE-JMJD1C and sh-SOCS2 (n = 10 in each group) in 0.1 ml PBS. | ||||
Full List of Potential Compound(s) Related to This m6A-centered Crosstalk
| 2A00: Brain cancer | 53 Compound(s) Regulating the Disease | Click to Show/Hide the Full List | ||
| Zinostatin stimalamer | Approved | [3] | ||
| Synonyms |
Smancs (TN)
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| Motexafin gadolinium | Approved | [4] | ||
| Synonyms |
Xcytrin; Gadolinium texaphyrin; GdT2B2; GD-Tex; Motexafin gadolinium (USAN); PCI-0120; Xcytrin (TN)
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| Lomustine | Approved | [5] | ||
| Synonyms |
Belustine; CCNU; CINU; Cecenu; CeeNU; Chloroethylcyclohexylnitrosourea; Lomustina; Lomustinum; Bristol Myers Squibb Brand of Lomustine; CCNU [Chloroethyl nitrosoureas]; Cyclohexyl chloroethyl nitrosourea; Lomustine medac Brand; Medac Brand of Lomustine; Rhone Poulenc Rorer Brand of Lomustine; OR5087; RB 1509; SRI 2200; Bristol-Myers Squibb Brand of Lomustine; CeeNU (TN); Lomustina [INN-Spanish]; Lomustinum [INN-Latin]; NPFAPI-06; Rhone-Poulenc Rorer Brand of Lomustine; CeeNU, CCNU, Lomustine; Lomustine (USAN/INN); Lomustine [USAN:BAN:INN]; N-(2-Chloroethyl)-N'-cyclohexyl-N-nitrosourea; (Chloro-2-ethyl)-1-cyclohexyl-3-nitrosourea; (Cloro-2-etil)-1-cicloesil-3-nitrosourea; (Cloro-2-etil)-1-cicloesil-3-nitrosourea [Italian];1-(2-Chloroethyl)-3-cyclohexyl-1-nitrosourea; 1-(2-Chloroethyl)-3-cyclohexyl-1-nitrosourea [Chloroethyl nitrosoureas]; 1-(2-Chloroethyl)-3-cyclohexylnitrosourea
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| Borocaptate sodium B 10 | Approved | [3] | ||
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| DTI-015 | Approved | [6] | ||
| Synonyms |
Carmustine; 154-93-8; 1,3-Bis(2-chloroethyl)-1-nitrosourea; BCNU; Carmustin; Nitrumon; Carmubris; Gliadel; BiCNU; Bi CNU; Carmustinum; Bischlorethylnitrosurea; Bischlorethylnitrosourea; Carmustina; Becenun; Becenum; Bischloroethyl nitrosourea; N,N'-BIS(2-CHLOROETHYL)-N-NITROSOUREA; Bis(2-chloroethyl)nitrosourea; Urea, N,N'-bis(2-chloroethyl)-N-nitroso-; Gliadel Wafer; FDA 0345; Bischloroethylnitrosourea; SRI 1720; 1,3-Bis(2-chloroethyl)nitrosourea; BiCNU (TN); Carmustinum [INN-Latin]; Carmustina [INN-Spanish]; DTI 015; NCI-C04773; SK; Injectable carmustine, Direct Therapeutics
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| Prinomastat | Approved | [7] | ||
| Synonyms |
AG-3354; AG-3362; Prinomastat (USAN/INN); (3S)-N-hydroxy-2,2-dimethyl-4-(4-pyridin-4-yloxyphenyl)sulfonylthiomorpholine-3-carboxamide
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| INO-1001 | Phase 3 | [8] | ||
| Synonyms |
Hypoxanthine arabinoside; LT00454797; 9-[(3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-3H-purin-6-one
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| GliAtak | Phase 3 | [9] | ||
| Synonyms |
GliAtak (TN)
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| SOT-107 | Phase 3 | [10] | ||
| Synonyms |
TransMID
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| ICT-107 | Phase 3 | [11] | ||
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| Cintredekin besudotox | Phase 3 | [12] | ||
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| Rindopepimut | Phase 3 | [13] | ||
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| DCVax-Ovarian | Phase 3 | [14] | ||
| Synonyms |
DCVax-L; Dendritic cell-based immunotherapy (ovarian cancer), Northwest Biotherapeutics
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| DCVax-Brain | Phase 3 | [15] | ||
| Synonyms |
Dendritic cell-based immunotherapy (brain cancer), Northwest Biotherapeutics
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| TVI-Brain-1 | Phase 2/3 | [16] | ||
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| NLG8189 | Phase 2/3 | [17] | ||
| Synonyms |
1-Methyl-D-tryptophan; Indoximod; 110117-83-4; D-Tryptophan, 1-methyl-; D-1MT; Indoximod (NLG-8189); D-1-methyltryptophan; UNII-TX5CYN1KMZ; D-(+)-1-Methyltryptophan; TX5CYN1KMZ; (R)-2-amino-3-(1-methyl-1H-indol-3-yl)propanoic acid; (2R)-2-amino-3-(1-methylindol-3-yl)propanoic acid; NSC-721782; (2R)-2-amino-3-(1-methyl-3-indolyl)propanoic acid; 1-MT; (2R)-2-azanyl-3-(1-methylindol-3-yl)propanoic acid; (2R)-2-amino-3-(1-methyl-1H-indol-3-yl)propanoic acid; D-l-Methyltryptophan; Indoximod [USAN:INN]; NLG-8189; NLG 8189
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| Synthetic survivin peptide vaccine | Phase 2 | [18] | ||
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| Fresolimumab | Phase 2 | [19] | ||
| Synonyms |
GC-1008
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| DNX-2401 | Phase 2 | [20] | ||
| Synonyms |
Tasadenoturev
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| TVI-Brain-1 cancer vaccine | Phase 2 | [21] | ||
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| PDT with Photofrin | Phase 2 | [17] | ||
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| F18-ML-10 | Phase 2 | [22] | ||
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| PT2385 | Phase 2 | [23] | ||
| Synonyms |
ONBSHRSJOPSEGS-INIZCTEOSA-N; PT-2385; UNII-6O16716DXP; 1672665-49-4; 6O16716DXP; SCHEMBL16555810; ZINC230453533; AKOS030526641; HY-12867; PT2385,1672665-49-4, PT 2385,PT-2385; Benzonitrile, 3-(((1S)-2,2-difluoro-2,3-dihydro-1-hydroxy-7-(methylsulfonyl)-1H-inden-4-yl)oxy)-5-fluoro-; 3-{[(1s)-2,2-Difluoro-1-Hydroxy-7-(Methylsulfonyl)-2,3-Dihydro-1h-Inden-4-Yl]oxy}-5-Fluorobenzonitrile; 3-(((1S)-2,2-Difluoro-1-hydroxy-7-methanesulfonyl-2,3-dihydro-1hinden-4-yl)oxy)-5-fluorobenzonitrile; 79A
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| ABT-414 | Phase 2 | [24] | ||
| External Link | ||||
| CLR1404-I-124 | Phase 1/2 | [25] | ||
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| DM-CHOC-PEN | Phase 2 | [26] | ||
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| L-alanosine | Phase 2 | [27] | ||
| Synonyms |
SDX-102
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| APX005M | Phase 2 | [17] | ||
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| WP-1066 | Phase 1/2 | [21] | ||
| Synonyms |
WP1066; 857064-38-1; (S,E)-3-(6-Bromopyridin-2-yl)-2-cyano-N-(1-phenylethyl)acrylamide; WP 1066; UNII-63V8AIE65T; 63V8AIE65T; AK-99218; C17H14BrN3O; (E)-3-(6-bromopyridin-2-yl)-2-cyano-N-[(1S)-1-phenylethyl]prop-2-enamide; MLS006010178; SCHEMBL1315826; QCR-16; SCHEMBL1315831; GTPL7972; CHEMBL1923234; EX-A760; AOB1497; DTXSID50235007; MolPort-044-723-708; MolPort-023-219-149; ZINC13983221; AKOS016007983; WP1066/WP-1066; CS-2736; DB12679; 2-Propenamide, 3-(6-bromo-2-pyridinyl)-2-cyano-N-((1S)-1-phenylethyl)-, (2E)-; HY-15312
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| Anti-EGFRvIII CAR transduced PBL | Phase 1/2 | [28] | ||
| External Link | ||||
| RG6156 | Phase 1 | [29] | ||
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| rhenium-186 | Phase 1 | [30] | ||
| Synonyms |
(~186~Re)Rhenium; 14998-63-1; 186Re; DTXSID60933825; Q18882928; RHENIUM (186-RE); Rhenium Re-186; Rhenium, isotope of mass 186; Rhenium-186; RHENIUM-186 [WHO-DD]; UNII-ZU7F1ET6TM; ZU7F1ET6TM
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| IGV-001 | Phase 1 | [31] | ||
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| DA-3607 | Phase 1 | [32] | ||
| Synonyms |
Ad-stTRAIL; TRAIL adenoviral gene therapy (cancer), Dong-A
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| DC/I540/KLH vaccine | Phase 1 | [33] | ||
| Synonyms |
HTERT:540-548; Telomerase: 540-548 peptide vaccine; DC/I540/KLH vaccine (cancer); Dendritic cell/hTERT peptide I540/keyhole limpet hemocyanin vaccine, Dana-Farber; DC/I540/KLH vaccine (cancer), Dana-Farber
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| KX2-361 | Phase 1 | [34] | ||
| Synonyms |
KX-02
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| MR1-1 | Phase 1 | [35] | ||
| Synonyms |
MR1-1KDEL; EGFR-specific immunotoxin, IVAX; Anticancer immunotoxin (EGFR-specific), IVAX
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| INdoximod + temozolomide | Phase 1 | [21] | ||
| External Link | ||||
| Anti-CD133-CAR vector-transduced T cells | Phase 1 | [36] | ||
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| 8H9 | Phase 1 | [37] | ||
| External Link | ||||
| CC-8490 | Phase 1 | [38] | ||
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| Sitimagene ceradenovec | Discontinued in Phase 3 | [39] | ||
| Synonyms |
Cerepro; EG-009; HSV thymidine kinase gene therapy, Ark
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| Ranagengliotucel-T | Discontinued in Phase 3 | [40] | ||
| Synonyms |
Glionix; Brain tumor vaccine, NovaRx; Antisense (TGFbeta) brain tumor vaccine, NovaRx
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| Oncolysin S | Discontinued in Phase 2 | [41] | ||
| Synonyms |
N901-bR
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| Labradimil | Discontinued in Phase 2 | [42] | ||
| Synonyms |
Cereport; Lobradimil; Receptor mediated permeabilizer; RMP 7; DRG-0182; RMP-7; N2-((S)-2-(L-Arginyl-L-prolyl-trans-4-hydroxy-L-prolylglycyl-3-(2-thienyl)-L-alanyl-L-seryl-L-prolinamido)-3-(p-methoxyphenyl)propyl)-L-arginine; (S-(R*,R*))-L-Arginyl-L-prolyl-trans-4-hydroxy-L-prolyl-3-(2-thienyl)-L-alanylglycyl-L-seryl-N-(2-((4-((aminoiminomethyl)amino)-1-carboxybutyl)amino)-1-((4-methoxyphenyl)methyl)ethyl)-L-prolinamide
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| Brain tumor vaccine | Discontinued in Phase 1 | [43] | ||
| Synonyms |
Brain cancer vaccine, IRC; Brain tumor vaccine, IRC; IR-850; Established cancer cell line therapy (brain cancer), IRC; GM-CSF vaccine (brain cancer), IRC
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| PCNU | Terminated | [44] | ||
| Synonyms |
NSC-95466
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| 131I-81C6 | Terminated | [45] | ||
| Synonyms |
Neuradiab; MAb-81C6; Iodine-131-81C6; Astatine-211-MAb-81C6; Iodine-131-MAb-81C6; Iodine-131-ch-81C6; Iodine-131-ch-81C6-F(ab)2; 211At-MAb-81C6
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| NSD-551 | Terminated | [46] | ||
| Synonyms |
BK channel activator (cancer), NeuroSearch/TopoTarget
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| AGT-2000 | Investigative | [47] | ||
| Synonyms |
Gene therapy (intravenous, brain cancer), ArmaGen
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| NV.XOD.09 | Investigative | [48] | ||
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| EDP-19 | Investigative | [48] | ||
| Synonyms |
SiRNA (convection-enhanced delivery, brain tumor), Sheba Medical Center/BioLineRx
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| MIQ-004 | Investigative | [48] | ||
| Synonyms |
M-IQ-004
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References
: m6A sites