m6A-centered Crosstalk Information
Mechanism of Crosstalk between m6A Modification and Epigenetic Regulation
| Crosstalk ID |
M6ACROT02055
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[1] | |||
DNA methylation
DNMT3A
IGFBP3
Direct
Inhibition
m6A modification
m6A Target
m6A Target
IGFBP3
: m6A sites
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| m6A Modification: | |||||
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| m6A Regulator | Insulin-like growth factor-binding protein 3 (IGFBP3) | READER | |||
| Epigenetic Regulation that have Cross-talk with This m6A Modification: | |||||
| Epigenetic Regulation Type | DNA methylation (DNAMeth) | ||||
| Epigenetic Regulator | Cysteine methyltransferase DNMT3A (DNMT3A) | WRITER | View Details | ||
| Regulated Target | Insulin like growth factor binding protein 3 (IGFBP3) | View Details | |||
| Crosstalk Relationship | DNA methylation → m6A | Inhibition | |||
| Crosstalk Mechanism | DNA methylation directly impacts m6A modification through modulating the expression level of m6A regulator | ||||
| Crosstalk Summary | By contrast, the transcription of CDH6 and IGFBP3 was triggered by HBx through the deprivation of DNMT3A from their promoters. Transcriptional levels of target genes in hepatocellular carcinoma (HCC) specimens were strongly correlated with the occurrence of HBx. | ||||
| Responsed Disease | Liver cancer | ICD-11: 2C12 | |||
| Cell Process | Gene expression | ||||
In-vitro Model |
Huh-7 | Adult hepatocellular carcinoma | Homo sapiens | CVCL_0336 | |
| Hep-G2 | Hepatoblastoma | Homo sapiens | CVCL_0027 | ||
Full List of Potential Compound(s) Related to This m6A-centered Crosstalk
| Cysteine methyltransferase DNMT3A (DNMT3A) | 8 Compound(s) Regulating the Target | Click to Show/Hide the Full List | ||
| PMID27376512-Compound-Figure3CN | Patented | [2] | ||
| MOA | Inhibitor | |||
| Activity | EC50 = 1100 nM | |||
| External Link | ||||
| PMID27376512-Compound-Figure3CG | Patented | [2] | ||
| MOA | Inhibitor | |||
| Activity | EC50 = 2400 nM | |||
| External Link | ||||
| PMID27376512-Compound-Figure3CM | Patented | [2] | ||
| MOA | Inhibitor | |||
| Activity | EC50 = 1100 nM | |||
| External Link | ||||
| PMID27376512-Compound-Figure2aExample1 | Patented | [2] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 3000 nM | |||
| External Link | ||||
| PMID27376512-Compound-MTC-424 | Patented | [2] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 1940 nM | |||
| External Link | ||||
| PMID27376512-Compound-MTC-427 | Patented | [2] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 295 nM | |||
| External Link | ||||
| PMID27376512-Compound-MTC-422 | Patented | [2] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 1430 nM | |||
| External Link | ||||
| PMID27376512-Compound-MTC-423 | Patented | [2] | ||
| MOA | Inhibitor | |||
| Activity | IC50 = 363 nM | |||
| External Link | ||||
| Insulin-like growth factor-binding protein 3 (IGFBP3) | 1 Compound(s) Regulating the Target | Click to Show/Hide the Full List | ||
| Salvianolic acid B | Phase 2 | [3] | ||
| Synonyms |
115939-25-8; 121521-90-2; Salvianolic-acid-B; Lithospermic acid B; MFCD07779133; (2R)-2-[(E)-3-[(2R,3R)-3-[(1R)-1-carboxy-2-(3,4-dihydroxyphenyl)ethoxy]carbonyl-2-(3,4-dihydroxyphenyl)-7-hydroxy-2,3-dihydro-1-benzofuran-4-yl]prop-2-enoyl]oxy-3-(3,4-dihydroxyphenyl)propanoic acid; (R)-2-(((2R,3R)-4-((E)-3-((R)-1-Carboxy-2-(3,4-dihydroxyphenyl)ethoxy)-3-oxoprop-1-en-1-yl)-2-(3,4-dihydroxyphenyl)-7-hydroxy-2,3-dihydrobenzofuran-3-carbonyl)oxy)-3-(3,4-dihydroxyphenyl)propanoic acid; Danshensuan B; Salcianolic acid B; C36H30O16; PubChem13035; CHEMBL3747259; ZINC49538629; AKOS015920258; AS-56980; S609; 939S258; (R)-2-((2R,3R)-4-((E)-3-((R)-1-carboxy-2-(3,4-dihydroxyphenyl)ethoxy)-3-oxoprop-1-enyl)-2-(3,4-dihydroxyphenyl)-7-hydroxy-2,3-dihydrobenzofuran-3-carbonyloxy)-3-(3,4-dihydroxyphenyl)propanoic acid; 1607436-77-0
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| MOA | Inhibitor | |||
| External Link | ||||
| 2C12: Liver cancer | 49 Compound(s) Regulating the Disease | Click to Show/Hide the Full List | ||
| 90Y-loaded resin microspheres | Approved | [4] | ||
| External Link | ||||
| Thymalfasin | Phase 2 | [5] | ||
| Synonyms |
Zadaxin; 62304-98-7; Thymosin alpha1; Thymosin alpha 1; Thymosin alpha1 (ox); Thymosin alpha1 (human); Thymalfasin [USAN:INN]; UNII-W0B22ISQ1C; Thymosin-alpha-1; 69440-99-9; Thymosin alpha1 (cattle); C129H215N33O55; W0B22ISQ1C; Zadaxin (TN); Thymalfasin alfa 1
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| External Link | ||||
| Ferumoxides | Approved | [6] | ||
| Synonyms |
AMI-25; 119683-68-0; Feridex; Feridex IV; Superparamagnetic iron oxide; UNII-G6N3J05W84; Ferumoxides [USAN:USP:BAN]; CCRIS 6722; HSDB 8072; AC1O5DID; G6N3J05W84; iron(2+); iron(3+); Iron oxide crystal is inverse spinel (X-ray data); Fe(II) and Fe(III) are present (Mossbauer Spectroscopy; Physical form is a colloidal particle of nonstoichiometric
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| External Link | ||||
| DTI-015 | Approved | [7] | ||
| Synonyms |
Carmustine; 154-93-8; 1,3-Bis(2-chloroethyl)-1-nitrosourea; BCNU; Carmustin; Nitrumon; Carmubris; Gliadel; BiCNU; Bi CNU; Carmustinum; Bischlorethylnitrosurea; Bischlorethylnitrosourea; Carmustina; Becenun; Becenum; Bischloroethyl nitrosourea; N,N'-BIS(2-CHLOROETHYL)-N-NITROSOUREA; Bis(2-chloroethyl)nitrosourea; Urea, N,N'-bis(2-chloroethyl)-N-nitroso-; Gliadel Wafer; FDA 0345; Bischloroethylnitrosourea; SRI 1720; 1,3-Bis(2-chloroethyl)nitrosourea; BiCNU (TN); Carmustinum [INN-Latin]; Carmustina [INN-Spanish]; DTI 015; NCI-C04773; SK; Injectable carmustine, Direct Therapeutics
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| External Link | ||||
| Nofazinlimab | Phase 3 | [8] | ||
| Synonyms |
CS1003; EQ176
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| External Link | ||||
| PV-10 | Phase 3 | [9] | ||
| Synonyms |
632-69-9; Rose bengal sodium; Rose bengal disodium salt; R105 sodium; Rose-bengal (131 I) natrium; Food Red No 105, sodium salt; EINECS 211-183-3; Food Red Color No 105, sodium salt; Sel disodique de rose bengale iodee (131 I); Rose bengale (131 I) sodique [INN-French]; Rosa bengala sodica (131 I) [INN-Spanish]; Roseum bengalense (131 I) natricum [INN-Latin]; 2,4,5,7-Tetraido(m,p,o',m')tetrachlorofluorescein, disodium salt; Fluorescein, 4,5,6,7-tetrachloro-2',4',5',7'-tetraiodo-, disodium salt; Disodium
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| External Link | ||||
| Brivanib | Phase 3 | [10] | ||
| Synonyms |
649735-46-6; BMS-540215; Brivanib (BMS-540215); BMS 540215; UNII-DDU33B674I; Brivanib [USAN]; BMS540215; DDU33B674I; CHEMBL377300; (2R)-1-[4-(4-Fluoro-2-methyl-1H-indol-5-yloxy)-5-methylpyrrolo[2,1-f][1,2,4]triazin-6-yloxy]propanol; Brivanib (USAN); (2R)-1-[4-[(4-FLUORO-2-METHYL-1H-INDOL-5-YL)OXY]-5-METHYL-PYRROLO[2,1-F][1,2,4]TRIAZIN-6-YL]OXYPROPAN-2-OL; (2R)-1-({4-[(4-fluoro-2-methyl-1H-indol-5-yl)oxy]-5-methylpyrrolo[2,1-f][1,2,4]triazin-6-yl}oxy)propan-2-ol
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| External Link | ||||
| JX-594 | Phase 3 | [11] | ||
| Synonyms |
Pexastimogene devacirepvec
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| ABH001 | Phase 3 | [12] | ||
| External Link | ||||
| MTC-DOX | Phase 2/3 | [13] | ||
| Synonyms |
MTC-doxorubicin
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| KD018 | Phase 2 | [14] | ||
| External Link | ||||
| Doxorubicin-eluting beads | Phase 2 | [15] | ||
| Synonyms |
DC Bead (TN)
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| 32-P BioSilicon | Phase 2 | [16] | ||
| Synonyms |
BrachySil
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| Cixutumumab | Phase 2 | [17] | ||
| Synonyms |
LY3012217
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| [131I]-Metuximab | Phase 2 | [18] | ||
| External Link | ||||
| Darinaparsin | Phase 2 | [19] | ||
| Synonyms |
ZIO-101
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| Tigatuzumab | Phase 2 | [20] | ||
| External Link | ||||
| CMC-001 | Phase 2 | [21] | ||
| Synonyms |
Manganese-based MRI contrast agent (liver tumor imaging), CMC Contrast
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| External Link | ||||
| OBP-301 | Phase 1/2 | [22] | ||
| External Link | ||||
| MBO7133 | Phase 1/2 | [23] | ||
| External Link | ||||
| INCB62079 | Phase 1/2 | [9] | ||
| External Link | ||||
| NV-1020 | Phase 1/2 | [24] | ||
| External Link | ||||
| DCVax-Liver | Phase 1/2 | [25] | ||
| Synonyms |
Dendritic cell-based immunotherapy (liver cancer), Northwest Biotherapeutics
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| SRF388 | Phase 1 | [26] | ||
| External Link | ||||
| ET140202 | Phase 1 | [27] | ||
| External Link | ||||
| ADP-A2AFP | Phase 1 | [28] | ||
| External Link | ||||
| SM04755 | Phase 1 | [29] | ||
| External Link | ||||
| Anti-CEA CAR-T therapy | Phase 1 | [9] | ||
| External Link | ||||
| PI-166 | Phase 1 | [30] | ||
| External Link | ||||
| CRS-100 | Phase 1 | [31] | ||
| External Link | ||||
| Autologous ET1402L1-CART cells | Phase 1 | [32] | ||
| External Link | ||||
| Anti-CD133-CAR vector-transduced T cells | Phase 1 | [33] | ||
| External Link | ||||
| MRX34 | Phase 1 | [34] | ||
| External Link | ||||
| ALN-VSP | Phase 1 | [35] | ||
| External Link | ||||
| EPCAM-targeted CAR-T cells | Clinical trial | [36] | ||
| External Link | ||||
| ADI | Discontinued in Phase 3 | [37] | ||
| Synonyms |
Arginine deiminase
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| GN-1140 | Discontinued in Phase 2 | [38] | ||
| External Link | ||||
| OGT-719 | Discontinued in Phase 2 | [39] | ||
| Synonyms |
OGS-719
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| AFP-Scan | Discontinued in Phase 2 | [40] | ||
| External Link | ||||
| SR1078 | Preclinical | [41] | ||
| Synonyms |
1246525-60-9; SR 1078; SR-1078; N-[4-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)phenyl]-4-(trifluoromethyl)benzamide; CHEMBL3094387; N-(4-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)phenyl)-4-(trifluoromethyl)benzamide; N-[4-[2,2,2-Trifluoro-1-hydroxy-1-(trifluoromethyl)ethyl]phenyl]-4-(trifluoromethyl)benzamide; SCHEMBL4880524; C17H10F9NO2; DTXSID30591895; BCP09203; EX-A2215; 4063AH; BDBM50444350; s5775; ZINC98052696; AKOS024458390; CS-1045; NCGC00379222-02; AK547149; AS-55921; HY-14422; W-5797; SR-03000001078; SR-03000001078-1; SR-03000001078-2
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| Occlusin | Preclinical | [42] | ||
| Synonyms |
Occlusin 50 Injection; Occlusin 500 injection
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| HRC-201 | Terminated | [43] | ||
| Synonyms |
Hemoglobin-imaging conjugate (HepSelect), Hemosol
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| 1,2,3,4,5,6-hexabromocyclohexane | Investigative | [44] | ||
| Synonyms |
1837-91-8; Benzene hexabromide; Cyclohexane, 1,2,3,4,5,6-hexabromo-; Hexabromocyclohexane; JAK2 Inhibitor II; ACMC-1BQJT; SCHEMBL459442; trans-alpha-Benzene hexabromide; CHEMBL444236; DTXSID4052687; CHEBI:93940; NSC7908; HMS3268H22; HMS3413C10; HMS3677C10; NSC-7908; ZINC1586309; ANW-23174; MFCD00059127; s5902; Cyclohexane,2,3,4,5,6-hexabromo-; AKOS015836040; 1,2,3,4,5,6-Hexabromo-cyclohexane; 1,2,3,4,5,6-Hexabromocyclohexane #; NCGC00092358-01; NCGC00092358-02; 1,2,3,4,5,6-hexakis(bromanyl)cyclohexane; A4510; FT-0633875; JAK2 Inhibitor II - CAS 1837-91-8; 1,2,3,4,5,6-Hexabromocyclohexane;NSC7908; A812818; 1,2,3,4,5,6-Hexabrom-cyclohexan (I(2)-Form); J-011778; 1,2,3,4,5,6-Hexabromocyclohexane, >=98% (HPLC); BRD-K06817181-001-01-5; Q27165694
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| STP-322 | Investigative | [45] | ||
| Synonyms |
Multi-targeted siRNA therapeutic cocktail (nanoparticle, liver tumor), Sirnaomics
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| AMB-8LK | Investigative | [45] | ||
| Synonyms |
Cancer therapy (monoclonal antibody), MAT Biopharma; Y90 anti-ferritin monoclonal antibody (cancer), MAT Biopharma; Yttrium-90 anti-ferritin mAb (cancer), MAT Biopharma; Yttrium-90 anti-ferritin mAb (Hodgkin's disease/pancreatic/liver cancer), MAT Biopharma; 90Y-AMB8LK mAb (cancer), MAT Biopharma; 90Y-AMB8LK monoclonal antibody (cancer), MAT Biopharma; 90Y-labelled anti-ferritin monoclonal antibody (cancer), MAT Biopharma
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| MiR-34a mimics | Investigative | [45] | ||
| Synonyms |
MiR-34a mimics (liver cancer)
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| P53 fusion protein | Investigative | [45] | ||
| Synonyms |
P53 fusion protein (pancreatic/liver cancer)
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| OP-05 | Investigative | [45] | ||
| Synonyms |
OP-05 program (prodrug, liver tumor); OP-05 program (prodrug, liver tumor), Onco-Pharmakon
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| GR-DD1 | Investigative | [45] | ||
| Synonyms |
Cytotoxin (hepatic metastasis), ERYtech
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References
: m6A sites