m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR01604)

Target Name	long intergenic non-protein coding RNA 2747 (LINC02747)
Synonyms	AP000439.3; CUPID2; AP000439.2; CCND1-upstream intergenic DNA repair 2 Click to Show/Hide
Gene Name	LINC02747
Chromosomal Location	11q13.3
Gene ID	105379407
HGNC ID	HGNC:54266

Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator

Histone modification

m6A Regulator: Methyltransferase-like 14 (METTL14)

Regulator Info

In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT03064		Crosstalk Info
Epigenetic Regulator	Lysine-specific demethylase 5B (KDM5B)
Regulated Target	Histone H3 lysine 4 trimethylation (H3K4me3)
Crosstalk relationship	Histone modification → m6A
Disease	Non-small cell lung cancer	Disease Info

RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01604)

long intergenic non-protein coding RNA 2747 (LINC02747)

N6-methyladenosine (m6A)

In total 20 m6A sequence/site(s) in this target gene
mod ID: M6ASITE007750		Click to Show/Hide the Full List
mod site	chr11:69475573-69475574:-		[2]
Sequence	GTGTTGTGTTGGCAGTCTGAACTGACGGAGACAGCATCTGA
Motif Score	3.373380952
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	rmsk_3578771; ENST00000645449.1
External Link	RMBase: m6A_site_152787
mod ID: M6ASITE007751		Click to Show/Hide the Full List
mod site	chr11:69475608-69475609:-		[2]
Sequence	AATAAATGTTTGCGATTTAAACCGCACAGTCTGTGGTGTTG
Motif Score	2.185083333
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000645449.1; rmsk_3578771
External Link	RMBase: m6A_site_152788
mod ID: M6ASITE007752		Click to Show/Hide the Full List
mod site	chr11:69475637-69475638:-		[2]
Sequence	GTGGAGTTCCAGCCTCCAGAACTGTGAGAAATAAATGTTTG
Motif Score	3.373380952
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	rmsk_3578771; ENST00000645449.1
External Link	RMBase: m6A_site_152789
mod ID: M6ASITE007753		Click to Show/Hide the Full List
mod site	chr11:69475687-69475688:-		[2]
Sequence	AAGAAGACGGCCACCTGCAAACAGCCATTGAATCTGCCAGT
Motif Score	2.20572619
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	rmsk_3578771; ENST00000645449.1
External Link	RMBase: m6A_site_152790
mod ID: M6ASITE007754		Click to Show/Hide the Full List
mod site	chr11:69475714-69475715:-		[2]
Sequence	CTGCTCTCTGTCGCACGAGGACCCCACAAGAAGACGGCCAC
Motif Score	3.622404762
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000645449.1; rmsk_3578771
External Link	RMBase: m6A_site_152791
mod ID: M6ASITE007755		Click to Show/Hide the Full List
mod site	chr11:69475747-69475748:-		[2]
Sequence	GATAAGAAGAGGCCCAGAGAACCGGCTCTGTCTCTGCTCTC
Motif Score	2.930744048
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000645449.1; rmsk_3578771
External Link	RMBase: m6A_site_152792
mod ID: M6ASITE007756		Click to Show/Hide the Full List
mod site	chr11:69475824-69475825:-		[2]
Sequence	TGATGGCATTAGGAGAGGGGACCTGTGGAATGTAGTTGAGT
Motif Score	3.622404762
Cell/Tissue List	A549
Seq Type List	MeRIP-seq
Transcript ID List	rmsk_3578771; ENST00000645449.1
External Link	RMBase: m6A_site_152793
mod ID: M6ASITE007757		Click to Show/Hide the Full List
mod site	chr11:69476879-69476880:-		[2]
Sequence	CTCCAGCCTGGCCTCGCAGGACCCTGGGCGGGACCCCAGGA
Motif Score	3.622404762
Cell/Tissue List	A549
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000645449.1
External Link	RMBase: m6A_site_152794
mod ID: M6ASITE007758		Click to Show/Hide the Full List
mod site	chr11:69476997-69476998:-		[2]
Sequence	GATCCTTTTATTTCTCCAGAACATTCTGCAGGTGAGCTGGG
Motif Score	2.951386905
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000645449.1
External Link	RMBase: m6A_site_152795
mod ID: M6ASITE007759		Click to Show/Hide the Full List
mod site	chr11:69477069-69477070:-		[2]
Sequence	AACGCTTTGCAGACAGCAAGACCCTCTGTGTAAGTTAAGAA
Motif Score	2.876744048
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000645449.1
External Link	RMBase: m6A_site_152796
mod ID: M6ASITE007760		Click to Show/Hide the Full List
mod site	chr11:69477077-69477078:-		[2]
Sequence	GAATCTAAAACGCTTTGCAGACAGCAAGACCCTCTGTGTAA
Motif Score	2.897386905
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000645449.1
External Link	RMBase: m6A_site_152797
mod ID: M6ASITE007761		Click to Show/Hide the Full List
mod site	chr11:69477173-69477174:-		[3]
Sequence	ACCAGCGAGACAGCCTTTGGACCTTTCGGAGCCTCACTTTC
Motif Score	3.622404762
Cell/Tissue List	HeLa; A549
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000645449.1; ENST00000542064.1
External Link	RMBase: m6A_site_152798
mod ID: M6ASITE007762		Click to Show/Hide the Full List
mod site	chr11:69477184-69477185:-		[3]
Sequence	CAGGCTTGCGAACCAGCGAGACAGCCTTTGGACCTTTCGGA
Motif Score	2.897386905
Cell/Tissue List	HeLa; A549
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000645449.1; ENST00000542064.1
External Link	RMBase: m6A_site_152799
mod ID: M6ASITE007763		Click to Show/Hide the Full List
mod site	chr11:69477193-69477194:-		[3]
Sequence	ACCTGCATTCAGGCTTGCGAACCAGCGAGACAGCCTTTGGA
Motif Score	2.930744048
Cell/Tissue List	HeLa; A549
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000645449.1; ENST00000542064.1
External Link	RMBase: m6A_site_152800
mod ID: M6ASITE007764		Click to Show/Hide the Full List
mod site	chr11:69477420-69477421:-		[2]
Sequence	CATGTGAACAAGCGTCCAGGACCCAGCGAAGCCCCAGGCTA
Motif Score	3.622404762
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000645449.1; ENST00000542064.1
External Link	RMBase: m6A_site_152801
mod ID: M6ASITE007765		Click to Show/Hide the Full List
mod site	chr11:69477433-69477434:-		[2]
Sequence	AAAGTGTGGTGAGCATGTGAACAAGCGTCCAGGACCCAGCG
Motif Score	2.951386905
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000645449.1; ENST00000542064.1
External Link	RMBase: m6A_site_152802
mod ID: M6ASITE007766		Click to Show/Hide the Full List
mod site	chr11:69477458-69477459:-		[2]
Sequence	GGAGCAATGTTACACGATAAACTGTAAAGTGTGGTGAGCAT
Motif Score	2.627720238
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000542064.1; ENST00000645449.1
External Link	RMBase: m6A_site_152803
mod ID: M6ASITE007767		Click to Show/Hide the Full List
mod site	chr11:69477524-69477525:-		[2]
Sequence	TGACACCGTGCTGCCATTGAACTCAACCCGAAAAAATGATC
Motif Score	3.373380952
Cell/Tissue List	A549
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000645449.1; ENST00000542064.1
External Link	RMBase: m6A_site_152804
mod ID: M6ASITE007768		Click to Show/Hide the Full List
mod site	chr11:69477585-69477586:-		[2]
Sequence	GGTTGTGACAGCCTGTGAGGACCTCTTGGCTCCCGGAGCCT
Motif Score	3.622404762
Cell/Tissue List	A549
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000542064.1; ENST00000645449.1
External Link	RMBase: m6A_site_152805
mod ID: M6ASITE007769		Click to Show/Hide the Full List
mod site	chr11:69479745-69479746:-		[3]
Sequence	AGAGGGTGGCCCAGTGGAGGACCCAGCATGGGCAGAGGTTT
Motif Score	3.622404762
Cell/Tissue List	HeLa; A549
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000542064.1; ENST00000645449.1
External Link	RMBase: m6A_site_152806

Ref 1	US patent application no. 2008,0269,123, Methods for treating polycystic kidney disease (pkd) or other cyst forming diseases.
Ref 2	Viral N(6)-methyladenosine upregulates replication and pathogenesis of human respiratory syncytial virus. Nat Commun. 2019 Oct 9;10(1):4595. doi: 10.1038/s41467-019-12504-y.
Ref 3	RNA m(6)A methylation regulates the epithelial mesenchymal transition of cancer cells and translation of Snail. Nat Commun. 2019 May 6;10(1):2065. doi: 10.1038/s41467-019-09865-9.

m6A Target Gene Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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