General Information of the m6A Target Gene (ID: M6ATAR01459)
Target Name Ubiquitin thioesterase OTUB1 (OTUB1)
Synonyms
EC 3.4.19.12; Deubiquitinating enzyme OTUB1; OTU domain-containing ubiquitin aldehyde-binding protein 1; Otubain-1; hOTU1; Ubiquitin-specific-processing protease OTUB1
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Gene Name OTUB1
Chromosomal Location 11q13.1
Family Peptidase C65 family
Function
Hydrolase that can specifically remove 'Lys-48'-linked conjugated ubiquitin from proteins and plays an important regulatory role at the level of protein turnover by preventing degradation (PubMed:12704427, PubMed:14661020, PubMed:12401499, PubMed:23827681). Regulator of T-cell anergy, a phenomenon that occurs when T-cells are rendered unresponsive to antigen rechallenge and no longer respond to their cognate antigen (PubMed:14661020). Acts via its interaction with RNF128/GRAIL, a crucial inductor of CD4 T-cell anergy (PubMed:14661020). Isoform 1 destabilizes RNF128, leading to prevent anergy (PubMed:14661020). In contrast, isoform 2 stabilizes RNF128 and promotes anergy (PubMed:14661020). Surprisingly, it regulates RNF128-mediated ubiquitination, but does not deubiquitinate polyubiquitinated RNF128 (PubMed:14661020). Deubiquitinates estrogen receptor alpha (ESR1) (PubMed:19383985). Mediates deubiquitination of 'Lys-48'-linked polyubiquitin chains, but not 'Lys-63'-linked polyubiquitin chains (PubMed:19211026, PubMed:23827681, PubMed:18954305). Not able to cleave di-ubiquitin (PubMed:23827681, PubMed:18954305). Also capable of removing NEDD8 from NEDD8 conjugates, but with a much lower preference compared to 'Lys-48'-linked ubiquitin (PubMed:23827681, PubMed:18954305).
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Gene ID 55611
Uniprot ID
OTUB1_HUMAN
HGNC ID
HGNC:23077
KEGG ID
hsa:55611
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01459)
Ubiquitin thioesterase OTUB1 (OTUB1)
Adenosine-to-Inosine editing (A-to-I)
In total 2 m6A sequence/site(s) in this target gene
mod ID: A2ISITE004851 Click to Show/Hide the Full List
mod site chr11:63992055-63992056:+ [2]
Sequence GGTGAAACCTCGTCTCTACTAAAAATACAAAATTAGCCGGG
Transcript ID List rmsk_3566251; ENST00000301453.7; ENST00000535715.5; ENST00000428192.6; ENST00000422031.6; ENST00000543004.5; ENST00000541478.5; ENST00000538426.5; ENST00000543988.1; ENST00000535140.1
External Link RMBase: RNA-editing_site_22377
mod ID: A2ISITE004852 Click to Show/Hide the Full List
mod site chr11:63992619-63992620:+ [2]
Sequence GAGTGCAATGGCACCATCTCAGCTCACTGCAACCTCCACCT
Transcript ID List ENST00000428192.6; ENST00000541478.5; ENST00000422031.6; ENST00000538426.5; ENST00000301453.7; ENST00000543004.5; ENST00000543988.1; ENST00000535140.1; ENST00000535715.5
External Link RMBase: RNA-editing_site_22378
5-methylcytidine (m5C)
In total 6 m6A sequence/site(s) in this target gene
mod ID: M5CSITE005182 Click to Show/Hide the Full List
mod site chr11:63998343-63998344:+
Sequence TTCCCCGCCCCCTGCACATTCGGGGTCTCAGCCCCCAGGCT
Cell/Tissue List HeLa
Seq Type List m5C-RIP-seq
Transcript ID List ENST00000535715.5; ENST00000538426.5; ENST00000422031.6; ENST00000301453.7; ENST00000541478.5
External Link RMBase: m5C_site_7678
mod ID: M5CSITE005183 Click to Show/Hide the Full List
mod site chr11:64000829-64000830:+
Sequence GCCCACCTCCCCAGGCGGCGCCCCATCACGGGGCGGCGGCA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000535715.5
External Link RMBase: m5C_site_7679
mod ID: M5CSITE005184 Click to Show/Hide the Full List
mod site chr11:64000830-64000831:+
Sequence CCCACCTCCCCAGGCGGCGCCCCATCACGGGGCGGCGGCAA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000535715.5
External Link RMBase: m5C_site_7680
mod ID: M5CSITE005185 Click to Show/Hide the Full List
mod site chr11:64000831-64000832:+
Sequence CCACCTCCCCAGGCGGCGCCCCATCACGGGGCGGCGGCAAA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000535715.5
External Link RMBase: m5C_site_7681
mod ID: M5CSITE005186 Click to Show/Hide the Full List
mod site chr11:64000832-64000833:+
Sequence CACCTCCCCAGGCGGCGCCCCATCACGGGGCGGCGGCAAAC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000535715.5
External Link RMBase: m5C_site_7682
mod ID: M5CSITE005187 Click to Show/Hide the Full List
mod site chr11:64000842-64000843:+
Sequence GGCGGCGCCCCATCACGGGGCGGCGGCAAACCCTAGGACCC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000535715.5
External Link RMBase: m5C_site_7683
N6-methyladenosine (m6A)
In total 31 m6A sequence/site(s) in this target gene
mod ID: M6ASITE006388 Click to Show/Hide the Full List
mod site chr11:63986190-63986191:+ [3]
Sequence ATCTGCAATCACCACCGGGAACTTTGGGAGGCTGGGAAGAT
Motif Score 3.373380952
Cell/Tissue List HepG2; MM6; peripheral-blood; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000428192.6; ENST00000422031.6; ENST00000535715.5; ENST00000301453.7; ENST00000535431.1; ENST00000541478.5
External Link RMBase: m6A_site_145660
mod ID: M6ASITE006389 Click to Show/Hide the Full List
mod site chr11:63986219-63986220:+ [3]
Sequence GGCTGGGAAGATGGAGCCAAACCAATGTGTGGGGTGGAGGT
Motif Score 2.185083333
Cell/Tissue List HepG2; peripheral-blood; MSC; iSLK; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000535715.5; ENST00000541478.5; ENST00000422031.6; ENST00000301453.7; ENST00000535431.1; ENST00000428192.6
External Link RMBase: m6A_site_145661
mod ID: M6ASITE006390 Click to Show/Hide the Full List
mod site chr11:63986470-63986471:+ [4]
Sequence TTAAAGATGGCGGCGGAGGAACCTCAGCAGCAGAAGCAGGA
Motif Score 2.930744048
Cell/Tissue List fibroblasts; A549; HEK293A-TOA; TIME; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000535715.5; ENST00000536443.1; ENST00000541478.5; ENST00000543004.5; ENST00000301453.7; ENST00000422031.6; ENST00000447683.2; ENST00000428192.6; ENST00000535431.1; ENST00000538426.5
External Link RMBase: m6A_site_145662
mod ID: M6ASITE006391 Click to Show/Hide the Full List
mod site chr11:63988666-63988667:+ [5]
Sequence CCTCCAGATTGCTGTGCAGAACCCTCTGGTGTCAGAGCGGC
Motif Score 2.930744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000535140.1; ENST00000422031.6; ENST00000543004.5; ENST00000536443.1; ENST00000428192.6; ENST00000301453.7; ENST00000535715.5; ENST00000541478.5; ENST00000543988.1; ENST00000538426.5; ENST00000447683.2
External Link RMBase: m6A_site_145663
mod ID: M6ASITE006392 Click to Show/Hide the Full List
mod site chr11:63988705-63988706:+ [6]
Sequence GCTGGAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATG
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000422031.6; ENST00000301453.7; ENST00000447683.2; ENST00000541478.5; ENST00000538426.5; ENST00000535140.1; ENST00000536443.1; ENST00000543988.1; ENST00000535715.5; ENST00000428192.6; ENST00000543004.5
External Link RMBase: m6A_site_145664
mod ID: M6ASITE006393 Click to Show/Hide the Full List
mod site chr11:63988817-63988818:+ [5]
Sequence CAGGAGGGTGCCTGCTTCAGACTTGCTTCCTGCTGGGTCTG
Motif Score 3.319380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000535715.5; ENST00000543988.1; ENST00000428192.6; ENST00000541478.5; ENST00000301453.7; ENST00000535140.1; ENST00000543004.5; ENST00000447683.2; ENST00000538426.5; ENST00000536443.1; ENST00000422031.6
External Link RMBase: m6A_site_145665
mod ID: M6ASITE006394 Click to Show/Hide the Full List
mod site chr11:63996536-63996537:+ [7]
Sequence GCTGTCTCCGCAGGACCTCCACAAAAAGTACTCGTACATCC
Motif Score 2.053113095
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000301453.7; ENST00000428192.6; ENST00000422031.6; ENST00000535715.5; ENST00000535140.1; ENST00000541478.5; ENST00000543004.5; ENST00000543988.1; ENST00000538426.5
External Link RMBase: m6A_site_145666
mod ID: M6ASITE006395 Click to Show/Hide the Full List
mod site chr11:63996551-63996552:+ [6]
Sequence CCTCCACAAAAAGTACTCGTACATCCGCAAGACCAGGCCTG
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000301453.7; ENST00000422031.6; ENST00000538426.5; ENST00000535715.5; ENST00000428192.6; ENST00000543988.1; ENST00000535140.1; ENST00000543004.5; ENST00000541478.5
External Link RMBase: m6A_site_145667
mod ID: M6ASITE006396 Click to Show/Hide the Full List
mod site chr11:63996917-63996918:+ [6]
Sequence CCCAGGGCTTCACTGAATTCACAATTGAGGATTTCCACAAC
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000541478.5; ENST00000538426.5; ENST00000422031.6; ENST00000535715.5; ENST00000535140.1; ENST00000543988.1; ENST00000543004.5; ENST00000301453.7; ENST00000428192.6
External Link RMBase: m6A_site_145668
mod ID: M6ASITE006397 Click to Show/Hide the Full List
mod site chr11:63996936-63996937:+ [6]
Sequence CACAATTGAGGATTTCCACAACACGGTGAGCCCTGGTGCCT
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000301453.7; ENST00000535140.1; ENST00000428192.6; ENST00000543004.5; ENST00000543988.1; ENST00000535715.5; ENST00000541478.5; ENST00000538426.5; ENST00000422031.6
External Link RMBase: m6A_site_145669
mod ID: M6ASITE006398 Click to Show/Hide the Full List
mod site chr11:63997056-63997057:+ [8]
Sequence TCCGTGGCTGCAGTTCATGGACCTGATTGAGCAGGTGGAGA
Motif Score 3.622404762
Cell/Tissue List HepG2
Seq Type List m6A-seq
Transcript ID List ENST00000541478.5; ENST00000543988.1; ENST00000428192.6; ENST00000538426.5; ENST00000543004.5; ENST00000422031.6; ENST00000535140.1; ENST00000301453.7; ENST00000535715.5
External Link RMBase: m6A_site_145670
mod ID: M6ASITE006399 Click to Show/Hide the Full List
mod site chr11:63997082-63997083:+ [8]
Sequence TTGAGCAGGTGGAGAAGCAGACCTCTGTCGCCGACCTGCTG
Motif Score 2.876744048
Cell/Tissue List HepG2
Seq Type List m6A-seq
Transcript ID List ENST00000422031.6; ENST00000535715.5; ENST00000543988.1; ENST00000535140.1; ENST00000428192.6; ENST00000301453.7; ENST00000538426.5; ENST00000543004.5; ENST00000541478.5
External Link RMBase: m6A_site_145671
mod ID: M6ASITE006400 Click to Show/Hide the Full List
mod site chr11:63997220-63997221:+ [3]
Sequence ACTTCATCGAGGGTGGACGGACTGTCAAGGAGTTCTGCCAG
Motif Score 4.065041667
Cell/Tissue List HepG2; H1A; H1B; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000535140.1; ENST00000535715.5; ENST00000301453.7; ENST00000428192.6; ENST00000543988.1; ENST00000541478.5; ENST00000543004.5; ENST00000538426.5; ENST00000422031.6
External Link RMBase: m6A_site_145672
mod ID: M6ASITE006401 Click to Show/Hide the Full List
mod site chr11:63997379-63997380:+ [7]
Sequence CATGTGCAAGGAGAGCGACCACATCCACATCATTGCGCTGG
Motif Score 2.053113095
Cell/Tissue List HEK293; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000543988.1; ENST00000541478.5; ENST00000301453.7; ENST00000535715.5; ENST00000543004.5; ENST00000538426.5; ENST00000422031.6; ENST00000535140.1; ENST00000428192.6
External Link RMBase: m6A_site_145673
mod ID: M6ASITE006402 Click to Show/Hide the Full List
mod site chr11:63997385-63997386:+ [6]
Sequence CAAGGAGAGCGACCACATCCACATCATTGCGCTGGCCCAGG
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000543988.1; ENST00000543004.5; ENST00000422031.6; ENST00000541478.5; ENST00000538426.5; ENST00000535140.1; ENST00000535715.5; ENST00000428192.6; ENST00000301453.7
External Link RMBase: m6A_site_145674
mod ID: M6ASITE006403 Click to Show/Hide the Full List
mod site chr11:63997433-63997434:+ [7]
Sequence CGTGTCCATCCAGGTGGAGTACATGGACCGCGGCGAGGGCG
Motif Score 2.856142857
Cell/Tissue List kidney; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000543988.1; ENST00000428192.6; ENST00000541478.5; ENST00000535715.5; ENST00000301453.7; ENST00000538426.5; ENST00000422031.6; ENST00000543004.5
External Link RMBase: m6A_site_145675
mod ID: M6ASITE006404 Click to Show/Hide the Full List
mod site chr11:63997439-63997440:+ [8]
Sequence CATCCAGGTGGAGTACATGGACCGCGGCGAGGGCGGCACCA
Motif Score 3.622404762
Cell/Tissue List HepG2; HeLa; H1A; H1B; A549; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000541478.5; ENST00000428192.6; ENST00000301453.7; ENST00000543004.5; ENST00000422031.6; ENST00000543988.1; ENST00000535715.5; ENST00000538426.5
External Link RMBase: m6A_site_145676
mod ID: M6ASITE006405 Click to Show/Hide the Full List
mod site chr11:63997469-63997470:+ [7]
Sequence GGGCGGCACCACCAATCCGCACATCTTCCCTGAGGGCTCCG
Motif Score 2.830589286
Cell/Tissue List kidney; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000301453.7; ENST00000543004.5; ENST00000535715.5; ENST00000543988.1; ENST00000422031.6; ENST00000538426.5; ENST00000428192.6; ENST00000541478.5
External Link RMBase: m6A_site_145677
mod ID: M6ASITE006406 Click to Show/Hide the Full List
mod site chr11:63997521-63997522:+ [7]
Sequence TACCTTCTCTACCGGCCTGGACACTACGATATCCTCTACAA
Motif Score 3.643047619
Cell/Tissue List HEK293; kidney; liver; hESC-HEK293T; HepG2; HeLa; hESCs; A549; Huh7; AML
Seq Type List m6A-REF-seq; MAZTER-seq; m6A-seq; MeRIP-seq; miCLIP
Transcript ID List ENST00000535715.5; ENST00000543004.5; ENST00000422031.6; ENST00000541478.5; ENST00000543988.1; ENST00000538426.5; ENST00000428192.6; ENST00000301453.7
External Link RMBase: m6A_site_145678
mod ID: M6ASITE006407 Click to Show/Hide the Full List
mod site chr11:63997538-63997539:+ [6]
Sequence TGGACACTACGATATCCTCTACAAATAGGGCTGGCTCCAGC
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000543988.1; ENST00000428192.6; ENST00000538426.5; ENST00000543004.5; ENST00000535715.5; ENST00000541478.5; ENST00000422031.6; ENST00000301453.7
External Link RMBase: m6A_site_145679
mod ID: M6ASITE006408 Click to Show/Hide the Full List
mod site chr11:63997597-63997598:+ [6]
Sequence CCCCCTCTGCCAGGCGCTAGACATGTACAGAGGTTTTTCTG
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T; HepG2; HeLa; hESCs; A549; Huh7
Seq Type List MAZTER-seq; m6A-seq; MeRIP-seq
Transcript ID List ENST00000428192.6; ENST00000541478.5; ENST00000538426.5; ENST00000543988.1; ENST00000301453.7; ENST00000543004.5; ENST00000535715.5; ENST00000422031.6
External Link RMBase: m6A_site_145680
mod ID: M6ASITE006409 Click to Show/Hide the Full List
mod site chr11:63997657-63997658:+ [6]
Sequence TTCACCCCCTTCTTCCTGTCACATGACCCCCCCCCATGTTT
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000301453.7; ENST00000428192.6; ENST00000535715.5; ENST00000543988.1; ENST00000538426.5; ENST00000422031.6; ENST00000541478.5; ENST00000543004.5
External Link RMBase: m6A_site_145681
mod ID: M6ASITE006410 Click to Show/Hide the Full List
mod site chr11:63997931-63997932:+ [5]
Sequence ATCCTGGAAGTTCCTTAGGGACTTGCCCAGGGTCCCAGGGC
Motif Score 4.065041667
Cell/Tissue List HeLa; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000538426.5; ENST00000422031.6; ENST00000301453.7; ENST00000541478.5; ENST00000535715.5; ENST00000543004.5
External Link RMBase: m6A_site_145682
mod ID: M6ASITE006411 Click to Show/Hide the Full List
mod site chr11:63997957-63997958:+ [6]
Sequence CCAGGGTCCCAGGGCCACCCACACTTCATCTGCTCCCTCAT
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000543004.5; ENST00000541478.5; ENST00000538426.5; ENST00000535715.5; ENST00000301453.7; ENST00000422031.6
External Link RMBase: m6A_site_145683
mod ID: M6ASITE006412 Click to Show/Hide the Full List
mod site chr11:63998011-63998012:+ [5]
Sequence ACGTCCCGGCTGGGCCCCAGACCCCAGCTTCCTGCCCTCCA
Motif Score 2.876744048
Cell/Tissue List HeLa; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000538426.5; ENST00000543004.5; ENST00000301453.7; ENST00000541478.5; ENST00000422031.6; ENST00000535715.5
External Link RMBase: m6A_site_145684
mod ID: M6ASITE006413 Click to Show/Hide the Full List
mod site chr11:63998085-63998086:+ [5]
Sequence AGGGGCCTTTGTGAGGCTGGACCCGGCTCAGGGCAGGTGGA
Motif Score 3.622404762
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000422031.6; ENST00000301453.7; ENST00000538426.5; ENST00000543004.5; ENST00000535715.5; ENST00000541478.5
External Link RMBase: m6A_site_145685
mod ID: M6ASITE006414 Click to Show/Hide the Full List
mod site chr11:63998279-63998280:+ [9]
Sequence GCACCCCCTCTGCTTGGGCCACGGTGTCTCTGCATTGCCTG
Motif Score 2.027047619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000538426.5; ENST00000543004.5; ENST00000535715.5; ENST00000541478.5; ENST00000422031.6; ENST00000301453.7
External Link RMBase: m6A_site_145686
mod ID: M6ASITE006415 Click to Show/Hide the Full List
mod site chr11:63998338-63998339:+ [6]
Sequence TTTTCTTCCCCGCCCCCTGCACATTCGGGGTCTCAGCCCCC
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000535715.5; ENST00000538426.5; ENST00000422031.6; ENST00000301453.7; ENST00000541478.5; ENST00000543004.5
External Link RMBase: m6A_site_145687
mod ID: M6ASITE006416 Click to Show/Hide the Full List
mod site chr11:63998400-63998401:+ [5]
Sequence CAGGCCCTCAATAAATGTGAACTGCTGCTGCCGCCTCTGCC
Motif Score 3.373380952
Cell/Tissue List HeLa; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000301453.7; ENST00000535715.5; ENST00000422031.6; ENST00000538426.5
External Link RMBase: m6A_site_145688
mod ID: M6ASITE006417 Click to Show/Hide the Full List
mod site chr11:64001433-64001434:+ [10]
Sequence CAGGCGGGCATCAAGAGAGGACCATCATTCCCCATTTTACA
Motif Score 3.622404762
Cell/Tissue List MT4
Seq Type List MeRIP-seq
Transcript ID List ENST00000535715.5; ENST00000536943.1
External Link RMBase: m6A_site_145700
mod ID: M6ASITE006418 Click to Show/Hide the Full List
mod site chr11:64001459-64001460:+ [10]
Sequence ATTCCCCATTTTACAGATGGACAAACCAAGGCCACCTTCTC
Motif Score 3.643047619
Cell/Tissue List MT4
Seq Type List MeRIP-seq
Transcript ID List ENST00000535715.5; ENST00000536943.1
External Link RMBase: m6A_site_145701