General Information of the m6A Target Gene (ID: M6ATAR01387)
Target Name Mucolipin-1 (TRPML1)
Synonyms
ML1; MG-2; Mucolipidin; Transient receptor potential channel mucolipin 1; TRPML1
    Click to Show/Hide
Gene Name TRPML1
Chromosomal Location 19p13.2
Family Transient receptor (TC 1.A.4) family, Polycystin subfamily, MCOLN1 sub-subfamily
Function
Nonselective cation channel probably playing a role in the regulation of membrane trafficking events and of metal homeostasis (PubMed:11013137, PubMed:12459486, PubMed:15336987, PubMed:14749347, PubMed:29019983, PubMed:27623384). Proposed to play a major role in Ca(2+) release from late endosome and lysosome vesicles to the cytoplasm, which is important for many lysosome-dependent cellular events, including the fusion and trafficking of these organelles, exocytosis and autophagy (PubMed:11013137, PubMed:12459486, PubMed:15336987, PubMed:14749347, PubMed:25720963, PubMed:29019983, PubMed:27623384). Required for efficient uptake of large particles in macrophages in which Ca(2+) release from the lysosomes triggers lysosomal exocytosis. May also play a role in phagosome-lysosome fusion (By similarity). Involved in lactosylceramide trafficking indicative for a role in the regulation of late endocytic membrane fusion/fission events (PubMed:16978393). By mediating lysosomal Ca(2+) release is involved in regulation of mTORC1 signaling and in mTOR/TFEB-dependent lysosomal adaptation to environmental cues such as nutrient levels (PubMed:25720963, PubMed:25733853, PubMed:27787197). Seems to act as lysosomal active oxygen species (ROS) sensor involved in ROS-induced TFEB activation and autophagy (PubMed:27357649). Functions as a Fe(2+) permeable channel in late endosomes and lysosomes (PubMed:18794901). Proposed to play a role in zinc homeostasis probably implicating its association with TMEM163 (PubMed:25130899) In adaptive immunity, TRPML2 and TRPML1 may play redundant roles in the function of the specialized lysosomes of B cells (By similarity).
    Click to Show/Hide
Gene ID 57192
Uniprot ID
MCLN1_HUMAN
HGNC ID
HGNC:13356
KEGG ID
hsa:57192
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01387)
Mucolipin-1 (TRPML1)
5-methylcytidine (m5C)
In total 2 m6A sequence/site(s) in this target gene
mod ID: M5CSITE001699 Click to Show/Hide the Full List
mod site chr19:7533843-7533844:+
Sequence CCCTGGACTGCAGAGACCCCCGCCCCCGACCCCGCTTATTT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000602227.1; ENST00000601870.1; ENST00000394321.9; ENST00000599334.1; ENST00000264079.11
External Link RMBase: m5C_site_22343
mod ID: M5CSITE001700 Click to Show/Hide the Full List
mod site chr19:7533945-7533946:+ [2]
Sequence TCGTGTCGGACCCTTGGGGGCGGGGAGACTGGGTGGGGAGG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000264079.11; ENST00000602227.1; ENST00000394321.9; ENST00000599334.1; ENST00000601870.1
External Link RMBase: m5C_site_22344
N6-methyladenosine (m6A)
In total 27 m6A sequence/site(s) in this target gene
mod ID: M6ASITE039069 Click to Show/Hide the Full List
mod site chr19:7522700-7522701:+ [3]
Sequence TGACAGCGGCGGGCGATCGGACCCAGGCTGCCCCGCCGTAC
Motif Score 3.622404762
Cell/Tissue List HeLa; A549; fibroblasts; Jurkat; GSC-11; HEK293T; HEK293A-TOA; MSC; TREX; iSLK; TIME; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000596390.1; ENST00000601003.1; ENST00000394321.9; ENST00000264079.11
External Link RMBase: m6A_site_415212
mod ID: M6ASITE039070 Click to Show/Hide the Full List
mod site chr19:7524962-7524963:+ [3]
Sequence CCTCTCCTATTCCCACAGAGACCGAGCGGCTTCTGACCCCC
Motif Score 2.876744048
Cell/Tissue List HeLa; A549; Jurkat; GSC-11; HEK293T; iSLK; MSC; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000264079.11; ENST00000394321.9; ENST00000596390.1; ENST00000601003.1
External Link RMBase: m6A_site_415213
mod ID: M6ASITE039071 Click to Show/Hide the Full List
mod site chr19:7524998-7524999:+ [3]
Sequence CCCCCAACCCCGGGTATGGGACCCAGGCGGGGCCTTCACCG
Motif Score 3.622404762
Cell/Tissue List HeLa; A549; Jurkat; GSC-11; HEK293T; iSLK; MSC; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000596390.1; ENST00000394321.9; ENST00000601003.1; ENST00000264079.11
External Link RMBase: m6A_site_415214
mod ID: M6ASITE039072 Click to Show/Hide the Full List
mod site chr19:7525028-7525029:+ [4]
Sequence GGCCTTCACCGGCCCCTCCGACACCCCCAGAAGAGGAAGAC
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000264079.11; ENST00000394321.9; ENST00000596390.1; ENST00000601003.1
External Link RMBase: m6A_site_415215
mod ID: M6ASITE039073 Click to Show/Hide the Full List
mod site chr19:7525047-7525048:+ [3]
Sequence GACACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAAT
Motif Score 2.876744048
Cell/Tissue List HeLa; GSC-11; HEK293T; iSLK; MSC
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000264079.11; ENST00000394321.9; ENST00000596390.1; ENST00000601003.1
External Link RMBase: m6A_site_415216
mod ID: M6ASITE039074 Click to Show/Hide the Full List
mod site chr19:7525089-7525090:+ [5]
Sequence CTTTTTCATGAGTCCCTGCGACAAGTTTCGAGCCAAGGGCC
Motif Score 2.865571429
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000596390.1; ENST00000264079.11; ENST00000601003.1; ENST00000394321.9
External Link RMBase: m6A_site_415217
mod ID: M6ASITE039075 Click to Show/Hide the Full List
mod site chr19:7526902-7526903:+ [4]
Sequence CCCGGCCAACGACACATTTGACATTGATCCGATGGTGGTTA
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000598406.1; ENST00000394321.9; ENST00000601003.1; ENST00000596008.1; ENST00000264079.11
External Link RMBase: m6A_site_415218
mod ID: M6ASITE039076 Click to Show/Hide the Full List
mod site chr19:7527075-7527076:+ [6]
Sequence CTTGAGGCCAGAAGTTTGAGACCAGCCTGGGCCACGTAGGA
Motif Score 2.876744048
Cell/Tissue List HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000264079.11; ENST00000394321.9; ENST00000596008.1; ENST00000601003.1; ENST00000598406.1; rmsk_4928503
External Link RMBase: m6A_site_415219
mod ID: M6ASITE039077 Click to Show/Hide the Full List
mod site chr19:7527098-7527099:+ [6]
Sequence AGCCTGGGCCACGTAGGAAGACCTTGTCTCTACGCACAAAC
Motif Score 2.876744048
Cell/Tissue List HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000394321.9; ENST00000596008.1; ENST00000264079.11; rmsk_4928503; ENST00000598406.1; ENST00000601003.1
External Link RMBase: m6A_site_415220
mod ID: M6ASITE039078 Click to Show/Hide the Full List
mod site chr19:7527117-7527118:+ [6]
Sequence GACCTTGTCTCTACGCACAAACAAATTAGCTGGGCGTGGTG
Motif Score 2.20572619
Cell/Tissue List HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000394321.9; ENST00000601003.1; ENST00000264079.11; ENST00000596008.1; ENST00000598406.1; rmsk_4928503
External Link RMBase: m6A_site_415221
mod ID: M6ASITE039079 Click to Show/Hide the Full List
mod site chr19:7527600-7527601:+ [4]
Sequence CTTGGAAAGCAGCTCCAGTTACAAGAACCTCACGCTCAAAT
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000598406.1; ENST00000601003.1; ENST00000264079.11; ENST00000394321.9
External Link RMBase: m6A_site_415222
mod ID: M6ASITE039080 Click to Show/Hide the Full List
mod site chr19:7527624-7527625:+ [4]
Sequence GAACCTCACGCTCAAATTCCACAAGTACTGCCTGCTCACTC
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000598406.1; ENST00000394321.9; ENST00000264079.11; ENST00000601003.1
External Link RMBase: m6A_site_415223
mod ID: M6ASITE039081 Click to Show/Hide the Full List
mod site chr19:7528167-7528168:+ [4]
Sequence GCCCCCACAGATCACGTTTGACAACAAAGCACACAGTGGGC
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000264079.11; ENST00000394321.9
External Link RMBase: m6A_site_415224
mod ID: M6ASITE039082 Click to Show/Hide the Full List
mod site chr19:7528899-7528900:+ [4]
Sequence GGAATTTGTCAATGGCTGGTACATCCTGCTCGTCACCAGCG
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000394321.9; ENST00000264079.11; ENST00000595860.5
External Link RMBase: m6A_site_415225
mod ID: M6ASITE039083 Click to Show/Hide the Full List
mod site chr19:7529191-7529192:+ [4]
Sequence CCGCTACCTGACCTTCTTCCACAACTACAATGTGAGTTTTG
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000599334.1; ENST00000594692.1; ENST00000394321.9; ENST00000264079.11; ENST00000595860.5
External Link RMBase: m6A_site_415226
mod ID: M6ASITE039084 Click to Show/Hide the Full List
mod site chr19:7529601-7529602:+ [4]
Sequence CAACCCAGATCCTCATCGCCACACTGCGGGTGGCCCTGCCC
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000264079.11; ENST00000594692.1; ENST00000599334.1; ENST00000394321.9; ENST00000595860.5
External Link RMBase: m6A_site_415227
mod ID: M6ASITE039085 Click to Show/Hide the Full List
mod site chr19:7530340-7530341:+ [4]
Sequence CTCGCTCATCAATGGGGACGACATGTTTGTGACGTTCGCCG
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000595860.5; ENST00000594692.1; ENST00000599334.1; ENST00000394321.9; ENST00000264079.11
External Link RMBase: m6A_site_415228
mod ID: M6ASITE039086 Click to Show/Hide the Full List
mod site chr19:7530445-7530446:+ [4]
Sequence CTTCATCAGCCTCTTCATCTACATGGTGCTCAGCCTCTTCA
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000264079.11; ENST00000595860.5; ENST00000394321.9; ENST00000599334.1
External Link RMBase: m6A_site_415229
mod ID: M6ASITE039087 Click to Show/Hide the Full List
mod site chr19:7533583-7533584:+ [3]
Sequence CTACATCGCACAGTGCCAGGACAGCCCCACCTCCGGCAAGT
Motif Score 3.643047619
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000394321.9; ENST00000602227.1; ENST00000264079.11; ENST00000599334.1
External Link RMBase: m6A_site_415230
mod ID: M6ASITE039088 Click to Show/Hide the Full List
mod site chr19:7533760-7533761:+ [3]
Sequence CCTGCTTCCTTCCTCCAGGGACCCCTCGGAGGAGCATTCGC
Motif Score 3.622404762
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000602227.1; ENST00000394321.9; ENST00000264079.11; ENST00000599334.1; ENST00000601870.1
External Link RMBase: m6A_site_415231
mod ID: M6ASITE039089 Click to Show/Hide the Full List
mod site chr19:7533804-7533805:+ [5]
Sequence TGGTGAATTGATTCGACCTGACTGCCGTTGGACCGTAGGCC
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000264079.11; ENST00000394321.9; ENST00000602227.1; ENST00000601870.1; ENST00000599334.1
External Link RMBase: m6A_site_415232
mod ID: M6ASITE039090 Click to Show/Hide the Full List
mod site chr19:7533815-7533816:+ [3]
Sequence TTCGACCTGACTGCCGTTGGACCGTAGGCCCTGGACTGCAG
Motif Score 3.622404762
Cell/Tissue List HeLa; MM6; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000599334.1; ENST00000394321.9; ENST00000264079.11; ENST00000601870.1; ENST00000602227.1
External Link RMBase: m6A_site_415233
mod ID: M6ASITE039091 Click to Show/Hide the Full List
mod site chr19:7533829-7533830:+ [3]
Sequence CGTTGGACCGTAGGCCCTGGACTGCAGAGACCCCCGCCCCC
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; MM6; HEK293A-TOA; endometrial
Seq Type List m6A-seq; MeRIP-seq; DART-seq
Transcript ID List ENST00000599334.1; ENST00000602227.1; ENST00000601870.1; ENST00000264079.11; ENST00000394321.9
External Link RMBase: m6A_site_415234
mod ID: M6ASITE039092 Click to Show/Hide the Full List
mod site chr19:7533838-7533839:+ [3]
Sequence GTAGGCCCTGGACTGCAGAGACCCCCGCCCCCGACCCCGCT
Motif Score 2.876744048
Cell/Tissue List HeLa; HEK293T; MM6; HEK293A-TOA; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000264079.11; ENST00000602227.1; ENST00000394321.9; ENST00000599334.1; ENST00000601870.1
External Link RMBase: m6A_site_415235
mod ID: M6ASITE039093 Click to Show/Hide the Full List
mod site chr19:7533920-7533921:+ [3]
Sequence CGCGCCCGAGGAGGGCCTGGACCTTTCGTGTCGGACCCTTG
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000394321.9; ENST00000599334.1; ENST00000264079.11; ENST00000602227.1; ENST00000601870.1
External Link RMBase: m6A_site_415236
mod ID: M6ASITE039094 Click to Show/Hide the Full List
mod site chr19:7533934-7533935:+ [3]
Sequence GCCTGGACCTTTCGTGTCGGACCCTTGGGGGCGGGGAGACT
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000394321.9; ENST00000599334.1; ENST00000264079.11; ENST00000602227.1; ENST00000601870.1
External Link RMBase: m6A_site_415237
mod ID: M6ASITE039095 Click to Show/Hide the Full List
mod site chr19:7533952-7533953:+ [3]
Sequence GGACCCTTGGGGGCGGGGAGACTGGGTGGGGAGGGTGTTGA
Motif Score 3.319380952
Cell/Tissue List HeLa; HEK293T; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000264079.11; ENST00000599334.1; ENST00000602227.1; ENST00000394321.9; ENST00000601870.1
External Link RMBase: m6A_site_415238