m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR01379)

Target Name	TRHDE antisense RNA 1 (TRHDE-AS1)
Synonyms	TRHDE antisense RNA 1 (non-protein coding) Click to Show/Hide
Gene Name	TRHDE-AS1
Chromosomal Location	12q21.1
Gene ID	283392
HGNC ID	HGNC:27471

Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator

Non-coding RNA

m6A Regulator: Methyltransferase-like 14 (METTL14)

Regulator Info

In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05832		Crosstalk Info
Epigenetic Regulator	TRHDE antisense RNA 1 (TRHDE-AS1)
Crosstalk relationship	m6A → ncRNA
Disease	Prostate cancer	Disease Info
Drug	Propofol	Drug Info

RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01379)

TRHDE antisense RNA 1 (TRHDE-AS1)

Adenosine-to-Inosine editing (A-to-I)

In total 22 m6A sequence/site(s) in this target gene
mod ID: A2ISITE005676		Click to Show/Hide the Full List
mod site	chr12:72259442-72259443:-		[2]
Sequence	TAAGAAACAAGAGTTTATTGAGACTCTGAAAGCAGAACAGG
Transcript ID List	ENST00000435350.1; rmsk_3828085; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30213
mod ID: A2ISITE005677		Click to Show/Hide the Full List
mod site	chr12:72259446-72259447:-		[2]
Sequence	ACTATAAGAAACAAGAGTTTATTGAGACTCTGAAAGCAGAA
Transcript ID List	rmsk_3828085; ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30214
mod ID: A2ISITE005678		Click to Show/Hide the Full List
mod site	chr12:72259453-72259454:-		[2]
Sequence	GCTTTCCACTATAAGAAACAAGAGTTTATTGAGACTCTGAA
Transcript ID List	rmsk_3828085; ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30215
mod ID: A2ISITE005679		Click to Show/Hide the Full List
mod site	chr12:72259456-72259457:-		[2]
Sequence	AATGCTTTCCACTATAAGAAACAAGAGTTTATTGAGACTCT
Transcript ID List	ENST00000550334.1; rmsk_3828085; ENST00000435350.1
External Link	RMBase: RNA-editing_site_30216
mod ID: A2ISITE005680		Click to Show/Hide the Full List
mod site	chr12:72259460-72259461:-		[2]
Sequence	TCTAAATGCTTTCCACTATAAGAAACAAGAGTTTATTGAGA
Transcript ID List	ENST00000550334.1; rmsk_3828085; ENST00000435350.1
External Link	RMBase: RNA-editing_site_30217
mod ID: A2ISITE005681		Click to Show/Hide the Full List
mod site	chr12:72259463-72259464:-		[2]
Sequence	ATTTCTAAATGCTTTCCACTATAAGAAACAAGAGTTTATTG
Transcript ID List	ENST00000435350.1; ENST00000550334.1; rmsk_3828085
External Link	RMBase: RNA-editing_site_30218
mod ID: A2ISITE005682		Click to Show/Hide the Full List
mod site	chr12:72259476-72259477:-		[2]
Sequence	ATGCCCAGTCTTGATTTCTAAATGCTTTCCACTATAAGAAA
Transcript ID List	rmsk_3828085; ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30219
mod ID: A2ISITE005683		Click to Show/Hide the Full List
mod site	chr12:72259496-72259497:-		[2]
Sequence	AGCAGCAATGAGCAAGTTTAATGCCCAGTCTTGATTTCTAA
Transcript ID List	rmsk_3828085; ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30220
mod ID: A2ISITE005684		Click to Show/Hide the Full List
mod site	chr12:72259497-72259498:-		[2]
Sequence	GAGCAGCAATGAGCAAGTTTAATGCCCAGTCTTGATTTCTA
Transcript ID List	ENST00000435350.1; ENST00000550334.1; rmsk_3828085
External Link	RMBase: RNA-editing_site_30221
mod ID: A2ISITE005685		Click to Show/Hide the Full List
mod site	chr12:72259502-72259503:-		[2]
Sequence	TGCCTGAGCAGCAATGAGCAAGTTTAATGCCCAGTCTTGAT
Transcript ID List	ENST00000550334.1; ENST00000435350.1; rmsk_3828085
External Link	RMBase: RNA-editing_site_30222
mod ID: A2ISITE005686		Click to Show/Hide the Full List
mod site	chr12:72259506-72259507:-		[2]
Sequence	ACAATGCCTGAGCAGCAATGAGCAAGTTTAATGCCCAGTCT
Transcript ID List	ENST00000435350.1; ENST00000550334.1; rmsk_3828085
External Link	RMBase: RNA-editing_site_30223
mod ID: A2ISITE005687		Click to Show/Hide the Full List
mod site	chr12:72259509-72259510:-		[2]
Sequence	GCAACAATGCCTGAGCAGCAATGAGCAAGTTTAATGCCCAG
Transcript ID List	ENST00000550334.1; rmsk_3828085; ENST00000435350.1
External Link	RMBase: RNA-editing_site_30224
mod ID: A2ISITE005688		Click to Show/Hide the Full List
mod site	chr12:72260528-72260529:-		[2]
Sequence	ATAAATCAAGACTGGGCATTAAATTTGCTCACTGCTGCTCA
Transcript ID List	ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30225
mod ID: A2ISITE005689		Click to Show/Hide the Full List
mod site	chr12:72260540-72260541:-		[2]
Sequence	AAAAATGCATTTATAAATCAAGACTGGGCATTAAATTTGCT
Transcript ID List	ENST00000550334.1; ENST00000435350.1
External Link	RMBase: RNA-editing_site_30226
mod ID: A2ISITE005690		Click to Show/Hide the Full List
mod site	chr12:72260541-72260542:-		[2]
Sequence	GAAAAATGCATTTATAAATCAAGACTGGGCATTAAATTTGC
Transcript ID List	ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30227
mod ID: A2ISITE005691		Click to Show/Hide the Full List
mod site	chr12:72260548-72260549:-		[2]
Sequence	TATAGTGGAAAAATGCATTTATAAATCAAGACTGGGCATTA
Transcript ID List	ENST00000550334.1; ENST00000435350.1
External Link	RMBase: RNA-editing_site_30228
mod ID: A2ISITE005692		Click to Show/Hide the Full List
mod site	chr12:72260567-72260568:-		[2]
Sequence	TCAATAAACTCTTGTTTCTTATAGTGGAAAAATGCATTTAT
Transcript ID List	ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30229
mod ID: A2ISITE005693		Click to Show/Hide the Full List
mod site	chr12:72260580-72260581:-		[2]
Sequence	TACTTTTAGAGTCTCAATAAACTCTTGTTTCTTATAGTGGA
Transcript ID List	ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30230
mod ID: A2ISITE005694		Click to Show/Hide the Full List
mod site	chr12:72260581-72260582:-		[2]
Sequence	CTACTTTTAGAGTCTCAATAAACTCTTGTTTCTTATAGTGG
Transcript ID List	ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30231
mod ID: A2ISITE005695		Click to Show/Hide the Full List
mod site	chr12:72260591-72260592:-		[2]
Sequence	CTTCCCTGTTCTACTTTTAGAGTCTCAATAAACTCTTGTTT
Transcript ID List	ENST00000550334.1; ENST00000435350.1
External Link	RMBase: RNA-editing_site_30232
mod ID: A2ISITE005696		Click to Show/Hide the Full List
mod site	chr12:72260599-72260600:-		[2]
Sequence	CTCTATTCCTTCCCTGTTCTACTTTTAGAGTCTCAATAAAC
Transcript ID List	ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30233
mod ID: A2ISITE005697		Click to Show/Hide the Full List
mod site	chr12:72260615-72260616:-		[2]
Sequence	GCTTGGCCTCCTTTGACTCTATTCCTTCCCTGTTCTACTTT
Transcript ID List	ENST00000435350.1; ENST00000550334.1
External Link	RMBase: RNA-editing_site_30234

N6-methyladenosine (m6A)

In total 21 m6A sequence/site(s) in this target gene
mod ID: M6ASITE014171		Click to Show/Hide the Full List
mod site	chr12:72254266-72254267:-		[3]
Sequence	TGGACCATGATCAAAACTGGACAGGAAGGAAAATAGAGATA
Motif Score	3.643047619
Cell/Tissue List	HEK293T; hNPCs
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000549957.1; ENST00000435350.1
External Link	RMBase: m6A_site_199372
mod ID: M6ASITE014172		Click to Show/Hide the Full List
mod site	chr12:72254271-72254272:-		[3]
Sequence	AAACATGGACCATGATCAAAACTGGACAGGAAGGAAAATAG
Motif Score	2.627720238
Cell/Tissue List	HEK293T; hNPCs
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000435350.1; ENST00000549957.1
External Link	RMBase: m6A_site_199373
mod ID: M6ASITE014173		Click to Show/Hide the Full List
mod site	chr12:72254283-72254284:-		[3]
Sequence	GGGAGCAATTATAAACATGGACCATGATCAAAACTGGACAG
Motif Score	3.622404762
Cell/Tissue List	HEK293T; hNPCs
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000435350.1; ENST00000549957.1
External Link	RMBase: m6A_site_199374
mod ID: M6ASITE014174		Click to Show/Hide the Full List
mod site	chr12:72254289-72254290:-		[3]
Sequence	TGGCAGGGGAGCAATTATAAACATGGACCATGATCAAAACT
Motif Score	2.20572619
Cell/Tissue List	HEK293T; hNPCs
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000435350.1; ENST00000549957.1
External Link	RMBase: m6A_site_199375
mod ID: M6ASITE014175		Click to Show/Hide the Full List
mod site	chr12:72254329-72254330:-		[3]
Sequence	TACAACCAGGGAAGAGTGGGACAAGGGAGATAAAGGATATT
Motif Score	3.643047619
Cell/Tissue List	HEK293T; hNPCs
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000549957.1; ENST00000435350.1
External Link	RMBase: m6A_site_199376
mod ID: M6ASITE014176		Click to Show/Hide the Full List
mod site	chr12:72254512-72254513:-		[3]
Sequence	TAAGAGGACAAGTAAGTAGAACATAGATAATGAAAATGCTG
Motif Score	2.951386905
Cell/Tissue List	hNPCs
Seq Type List	m6A-seq
Transcript ID List	ENST00000435350.1; ENST00000549957.1
External Link	RMBase: m6A_site_199377
mod ID: M6ASITE014177		Click to Show/Hide the Full List
mod site	chr12:72254525-72254526:-		[3]
Sequence	GGATATACTAATCTAAGAGGACAAGTAAGTAGAACATAGAT
Motif Score	3.643047619
Cell/Tissue List	hNPCs
Seq Type List	m6A-seq
Transcript ID List	ENST00000435350.1; ENST00000549957.1
External Link	RMBase: m6A_site_199378
mod ID: M6ASITE014178		Click to Show/Hide the Full List
mod site	chr12:72255638-72255639:-		[3]
Sequence	TTAAAGAGGAACTGCCCGGAACAGCCCGGGGATTGTTCCTC
Motif Score	2.951386905
Cell/Tissue List	HEK293T; hNPCs
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000435350.1; rmsk_3828081; ENST00000549957.1
External Link	RMBase: m6A_site_199379
mod ID: M6ASITE014179		Click to Show/Hide the Full List
mod site	chr12:72255648-72255649:-		[3]
Sequence	ACATCTCAAGTTAAAGAGGAACTGCCCGGAACAGCCCGGGG
Motif Score	3.373380952
Cell/Tissue List	HEK293T; hNPCs
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	rmsk_3828081; ENST00000435350.1; ENST00000549957.1
External Link	RMBase: m6A_site_199380
mod ID: M6ASITE014180		Click to Show/Hide the Full List
mod site	chr12:72255707-72255708:-		[3]
Sequence	ATAAGGAAGAACTGCCTGAAACAGCCTGGATCTTATTCCTG
Motif Score	2.20572619
Cell/Tissue List	HEK293T; hNPCs
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000549957.1; rmsk_3828081; ENST00000550334.1; ENST00000435350.1
External Link	RMBase: m6A_site_199381
mod ID: M6ASITE014181		Click to Show/Hide the Full List
mod site	chr12:72255717-72255718:-		[3]
Sequence	ATGTCCTGAGATAAGGAAGAACTGCCTGAAACAGCCTGGAT
Motif Score	3.373380952
Cell/Tissue List	HEK293T; hNPCs
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000435350.1; ENST00000550334.1; rmsk_3828081; ENST00000549957.1
External Link	RMBase: m6A_site_199382
mod ID: M6ASITE014182		Click to Show/Hide the Full List
mod site	chr12:72271900-72271901:-		[4]
Sequence	GTTGCAGACCCGACAGCGAGACTCCCTCATTCCAGTCTTGC
Motif Score	3.319380952
Cell/Tissue List	MM6; HEK293T
Seq Type List	m6A-seq
Transcript ID List	ENST00000550334.1; ENST00000435350.1; ENST00000426250.3
External Link	RMBase: m6A_site_199383
mod ID: M6ASITE014183		Click to Show/Hide the Full List
mod site	chr12:72271913-72271914:-		[3]
Sequence	CAAACGGCAGGAGGTTGCAGACCCGACAGCGAGACTCCCTC
Motif Score	2.876744048
Cell/Tissue List	hNPCs; MM6; HEK293T
Seq Type List	m6A-seq
Transcript ID List	ENST00000426250.3; ENST00000435350.1; ENST00000550334.1
External Link	RMBase: m6A_site_199384
mod ID: M6ASITE014184		Click to Show/Hide the Full List
mod site	chr12:72272028-72272029:-		[3]
Sequence	GGTGGGAGAGACTAGAGTGAACCAGCAGGAGGAAGTCCCAG
Motif Score	2.930744048
Cell/Tissue List	HEK293T; hNPCs; MM6; endometrial
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000435350.1; ENST00000426250.3
External Link	RMBase: m6A_site_199385
mod ID: M6ASITE014185		Click to Show/Hide the Full List
mod site	chr12:72272038-72272039:-		[3]
Sequence	GGATGGCCGAGGTGGGAGAGACTAGAGTGAACCAGCAGGAG
Motif Score	3.319380952
Cell/Tissue List	HEK293T; hNPCs; MM6; endometrial
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000426250.3; ENST00000435350.1
External Link	RMBase: m6A_site_199386
mod ID: M6ASITE014186		Click to Show/Hide the Full List
mod site	chr12:72272440-72272441:-		[5]
Sequence	TCAGCCCCGCCTCACTCTGGACACCGGGCTGTGAGCTCTGG
Motif Score	3.643047619
Cell/Tissue List	U2OS; H1B; fibroblasts; MSC
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000426250.3; ENST00000435350.1
External Link	RMBase: m6A_site_199387
mod ID: M6ASITE014187		Click to Show/Hide the Full List
mod site	chr12:72272491-72272492:-		[6]
Sequence	TCTTTTAAGACGGGTTCTGGACACAAGCGACGGCAGCTTCC
Motif Score	3.643047619
Cell/Tissue List	H1B; hNPCs; fibroblasts; MSC; endometrial; HEC-1-A
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000435350.1; ENST00000426250.3
External Link	RMBase: m6A_site_199388
mod ID: M6ASITE014188		Click to Show/Hide the Full List
mod site	chr12:72272916-72272917:-		[5]
Sequence	CGCGAGCAATGCCACGAGGGACACAGCGAAGGCCAGCACAA
Motif Score	3.643047619
Cell/Tissue List	U2OS; H1A; MSC; endometrial; HEC-1-A
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000426250.3
External Link	RMBase: m6A_site_199390
mod ID: M6ASITE014189		Click to Show/Hide the Full List
mod site	chr12:72273125-72273126:-		[7]
Sequence	TGGGCCGACGTGGTCCCCGGACTGGCCACCCCACCCGCCTC
Motif Score	4.065041667
Cell/Tissue List	HEK293T; U2OS; H1299; MSC; endometrial
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000426250.3
External Link	RMBase: m6A_site_199392
mod ID: M6ASITE014190		Click to Show/Hide the Full List
mod site	chr12:72273717-72273718:-		[6]
Sequence	GACCCCGAGGCATCTGGGAGACCCCGGAGTTCTGACTGCCC
Motif Score	2.876744048
Cell/Tissue List	H1A; MSC
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000426250.3
External Link	RMBase: m6A_site_199396
mod ID: M6ASITE014191		Click to Show/Hide the Full List
mod site	chr12:72273736-72273737:-		[6]
Sequence	GCGAAGTTGGCGGCAGCGAGACCCCGAGGCATCTGGGAGAC
Motif Score	2.876744048
Cell/Tissue List	H1A; MSC
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000426250.3
External Link	RMBase: m6A_site_199397

Ref 1	Siltuximab. 2022 May 15. Drugs and Lactation Database (LactMed) [Internet]. Bethesda (MD): National Library of Medicine (US); 2006-.
Ref 2	RADAR: a rigorously annotated database of A-to-I RNA editing. Nucleic Acids Res. 2014 Jan;42(Database issue):D109-13. doi: 10.1093/nar/gkt996. Epub 2013 Oct 25.
Ref 3	Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites. Cell Rep. 2014 Jul 10;8(1):284-96. doi: 10.1016/j.celrep.2014.05.048. Epub 2014 Jun 26.
Ref 4	FTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N(6)-Methyladenosine RNA Demethylase. Cancer Cell. 2017 Jan 9;31(1):127-141. doi: 10.1016/j.ccell.2016.11.017. Epub 2016 Dec 22.
Ref 5	RNA-methylation-dependent RNA processing controls the speed of the circadian clock. Cell. 2013 Nov 7;155(4):793-806. doi: 10.1016/j.cell.2013.10.026.
Ref 6	m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell. 2014 Dec 4;15(6):707-19. doi: 10.1016/j.stem.2014.09.019. Epub 2014 Oct 16.
Ref 7	Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell. 2012 Jun 22;149(7):1635-46. doi: 10.1016/j.cell.2012.05.003. Epub 2012 May 17.

m6A Target Gene Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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