General Information of the m6A Target Gene (ID: M6ATAR01263)
Target Name Proliferating cell nuclear antigen (PCNA)
Synonyms
PCNA; Cyclin
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Gene Name PCNA
Chromosomal Location 20p12.3
Family PCNA family
Function
Auxiliary protein of DNA polymerase delta and epsilon, is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand (PubMed:35585232). Induces a robust stimulatory effect on the 3'-5' exonuclease and 3'-phosphodiesterase, but not apurinic-apyrimidinic (AP) endonuclease, APEX2 activities. Has to be loaded onto DNA in order to be able to stimulate APEX2. Plays a key role in DNA damage response (DDR) by being conveniently positioned at the replication fork to coordinate DNA replication with DNA repair and DNA damage tolerance pathways (PubMed:24939902). Acts as a loading platform to recruit DDR proteins that allow completion of DNA replication after DNA damage and promote postreplication repair: Monoubiquitinated PCNA leads to recruitment of translesion (TLS) polymerases, while 'Lys-63'-linked polyubiquitination of PCNA is involved in error-free pathway and employs recombination mechanisms to synthesize across the lesion (PubMed:24695737).
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Gene ID 5111
Uniprot ID
PCNA_HUMAN
HGNC ID
HGNC:8729
KEGG ID
hsa:5111
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01263)
Proliferating cell nuclear antigen (PCNA)
N4-acetylcytidine (ac4C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: AC4SITE000045 Click to Show/Hide the Full List
mod site chr20:5115567-5115568:- [4]
Sequence ATCTTTTGTTTTGTAGGTTACCATAGAGATGAATGAACCAG
Cell/Tissue List H1
Seq Type List ac4C-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: ac4C_site_1191
5-methylcytidine (m5C)
In total 2 m6A sequence/site(s) in this target gene
mod ID: M5CSITE002616 Click to Show/Hide the Full List
mod site chr20:5118315-5118316:-
Sequence GGCTGGTCTGGAACTCCTGGCCTCAAGTGATCCTCCTCCGT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m5C_site_28518
mod ID: M5CSITE002617 Click to Show/Hide the Full List
mod site chr20:5119839-5119840:- [5]
Sequence AAACCAGCTAGACTTTCCTCCTTCCCGCCTGCCTGTAGCGG
Seq Type List Bisulfite-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m5C_site_28519
N6-methyladenosine (m6A)
In total 30 m6A sequence/site(s) in this target gene
mod ID: M6ASITE051327 Click to Show/Hide the Full List
mod site chr20:5114957-5114958:- [6]
Sequence TAAAGTTACTTGAATTTCAAACATCACAGGGCAGTGTCTTC
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522134
mod ID: M6ASITE051328 Click to Show/Hide the Full List
mod site chr20:5115030-5115031:- [6]
Sequence ATACTTGTGATTTTTATAATACAAAAGGGTCTTGACTCTAA
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522135
mod ID: M6ASITE051329 Click to Show/Hide the Full List
mod site chr20:5115048-5115049:- [7]
Sequence TATTTTTGTCTCTTAGAAATACTTGTGATTTTTATAATACA
Motif Score 2.53247619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522136
mod ID: M6ASITE051330 Click to Show/Hide the Full List
mod site chr20:5115077-5115078:- [7]
Sequence AGTCAGATCTGGTCTAGTTAACCTAGAAGTATTTTTGTCTC
Motif Score 2.147452381
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522137
mod ID: M6ASITE051331 Click to Show/Hide the Full List
mod site chr20:5115176-5115177:- [6]
Sequence CCAAATTTGTACCTCTAAGTACATATGTAGATATTGTTTTC
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522138
mod ID: M6ASITE051332 Click to Show/Hide the Full List
mod site chr20:5115197-5115198:- [7]
Sequence ATACTGAAGTCTTTTCTGTCACCAAATTTGTACCTCTAAGT
Motif Score 2.026654762
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522139
mod ID: M6ASITE051333 Click to Show/Hide the Full List
mod site chr20:5115239-5115240:- [8]
Sequence TAAAACTAAGCTCTTTGAGAACTGCTTCTAAGATGCCAGCA
Motif Score 3.373380952
Cell/Tissue List HeLa; hNPCs; AML
Seq Type List m6A-seq; miCLIP
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522140
mod ID: M6ASITE051334 Click to Show/Hide the Full List
mod site chr20:5115255-5115256:- [8]
Sequence TTAAAATTCAAGAAAATAAAACTAAGCTCTTTGAGAACTGC
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; hNPCs
Seq Type List m6A-seq; DART-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522141
mod ID: M6ASITE051335 Click to Show/Hide the Full List
mod site chr20:5115322-5115323:- [7]
Sequence GGATATGGGACACTTAAAATACTACTTGGCTCCCAAGATCG
Motif Score 2.53247619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522142
mod ID: M6ASITE051336 Click to Show/Hide the Full List
mod site chr20:5115333-5115334:- [8]
Sequence TATAAAATTGCGGATATGGGACACTTAAAATACTACTTGGC
Motif Score 3.643047619
Cell/Tissue List HeLa; hESC-HEK293T; hNPCs
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522143
mod ID: M6ASITE051337 Click to Show/Hide the Full List
mod site chr20:5115478-5115479:- [6]
Sequence CTCCACTCTCTTCAACGGTGACACTCAGTATGTCTGCAGAT
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522144
mod ID: M6ASITE051338 Click to Show/Hide the Full List
mod site chr20:5115508-5115509:- [6]
Sequence TGAGGTACCTGAACTTCTTTACAAAAGCCACTCCACTCTCT
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522145
mod ID: M6ASITE051339 Click to Show/Hide the Full List
mod site chr20:5115516-5115517:- [8]
Sequence TTTTGCACTGAGGTACCTGAACTTCTTTACAAAAGCCACTC
Motif Score 3.373380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522146
mod ID: M6ASITE051340 Click to Show/Hide the Full List
mod site chr20:5115551-5115552:- [8]
Sequence GTTACCATAGAGATGAATGAACCAGTTCAACTAACTTTTGC
Motif Score 2.930744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522147
mod ID: M6ASITE051341 Click to Show/Hide the Full List
mod site chr20:5117498-5117499:- [8]
Sequence GAAACATTAAATTGTCACAGACAAGTAATGTCGATAAAGAG
Motif Score 2.897386905
Cell/Tissue List HeLa; hESC-HEK293T
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522148
mod ID: M6ASITE051342 Click to Show/Hide the Full List
mod site chr20:5117515-5117516:- [8]
Sequence TGGAGAACTTGGAAATGGAAACATTAAATTGTCACAGACAA
Motif Score 2.20572619
Cell/Tissue List HeLa; hESC-HEK293T
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522149
mod ID: M6ASITE051343 Click to Show/Hide the Full List
mod site chr20:5117529-5117530:- [8]
Sequence AAATTTTCTGCAAGTGGAGAACTTGGAAATGGAAACATTAA
Motif Score 3.373380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522150
mod ID: M6ASITE051344 Click to Show/Hide the Full List
mod site chr20:5117661-5117662:- [8]
Sequence AATTTTTGTTCTTAATAGGAACAGGAGTACAGCTGTGTAGT
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522151
mod ID: M6ASITE051345 Click to Show/Hide the Full List
mod site chr20:5118621-5118622:- [7]
Sequence ATGGATTTAGATGTTGAACAACTTGGAATTCCAGTGAGTAT
Motif Score 2.595904762
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522152
mod ID: M6ASITE051346 Click to Show/Hide the Full List
mod site chr20:5118624-5118625:- [8]
Sequence TTGATGGATTTAGATGTTGAACAACTTGGAATTCCAGTGAG
Motif Score 2.951386905
Cell/Tissue List HeLa; hESC-HEK293T
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522153
mod ID: M6ASITE051347 Click to Show/Hide the Full List
mod site chr20:5118658-5118659:- [8]
Sequence AGACCAGGAGAAAGTTTCAGACTATGAAATGAAGTTGATGG
Motif Score 3.319380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522154
mod ID: M6ASITE051348 Click to Show/Hide the Full List
mod site chr20:5118822-5118823:- [6]
Sequence CCGGCAATGAAGATATCATTACACTAAGGGCCGAAGATAAC
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522155
mod ID: M6ASITE051349 Click to Show/Hide the Full List
mod site chr20:5119108-5119109:- [7]
Sequence ATGTGGCAGCCTGTCATCCTACTTAGTGGCAGGAGATTGTT
Motif Score 2.500660714
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522156
mod ID: M6ASITE051350 Click to Show/Hide the Full List
mod site chr20:5119586-5119587:- [9]
Sequence CAACCTGGCCATGGGCGTGAACCTCACCAGGTGAGCCTCGC
Motif Score 2.930744048
Cell/Tissue List A549; peripheral-blood
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522157
mod ID: M6ASITE051351 Click to Show/Hide the Full List
mod site chr20:5119625-5119626:- [6]
Sequence CCTGCGGTCTGAGGGCTTCGACACCTACCGCTGCGACCGCA
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522158
mod ID: M6ASITE051352 Click to Show/Hide the Full List
mod site chr20:5119676-5119677:- [9]
Sequence TGTAAACCTGCAGAGCATGGACTCGTCCCACGTCTCTTTGG
Motif Score 4.065041667
Cell/Tissue List A549; HepG2; peripheral-blood; MSC; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522159
mod ID: M6ASITE051353 Click to Show/Hide the Full List
mod site chr20:5119691-5119692:- [9]
Sequence TATTAGCTCCAGCGGTGTAAACCTGCAGAGCATGGACTCGT
Motif Score 2.185083333
Cell/Tissue List A549; HepG2; peripheral-blood; MSC; TREX
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522160
mod ID: M6ASITE051354 Click to Show/Hide the Full List
mod site chr20:5119736-5119737:- [8]
Sequence GGTGTTGGAGGCACTCAAGGACCTCATCAACGAGGCCTGCT
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; A549; peripheral-blood; MSC; TIME; TREX; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522161
mod ID: M6ASITE051355 Click to Show/Hide the Full List
mod site chr20:5119848-5119849:- [8]
Sequence CTGAAGCCGAAACCAGCTAGACTTTCCTCCTTCCCGCCTGC
Motif Score 3.319380952
Cell/Tissue List HeLa; HepG2; HEK293T; A549; H1B; fibroblasts; GM12878; MM6; Huh7; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000379143.10; ENST00000379160.3
External Link RMBase: m6A_site_522162
mod ID: M6ASITE051356 Click to Show/Hide the Full List
mod site chr20:5119857-5119858:- [8]
Sequence CTGAGGCTCCTGAAGCCGAAACCAGCTAGACTTTCCTCCTT
Motif Score 2.185083333
Cell/Tissue List HeLa; HepG2; HEK293T; A549; H1B; fibroblasts; GM12878; MM6; Huh7; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: m6A_site_522163
2'-O-Methylation (2'-O-Me)
In total 1 m6A sequence/site(s) in this target gene
mod ID: 2OMSITE000255 Click to Show/Hide the Full List
mod site chr20:5119891-5119892:- [10]
Sequence CTCAGCCGGTCGTCGCGACGTTCGCCCGCTCGCTCTGAGGC
Cell/Tissue List HEK293
Seq Type List Nm-seq
Transcript ID List ENST00000379160.3; ENST00000379143.10
External Link RMBase: Nm_site_3410