m6A Target Gene Information
General Information of the m6A Target Gene (ID: M6ATAR01054)
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Histone modification
m6A Regulator: RNA demethylase ALKBH5 (ALKBH5)
| In total 5 item(s) under this m6A regulator | ||
| Crosstalk ID: M6ACROT03259 | ||
| Epigenetic Regulator | Lysine-specific demethylase 4C (KDM4C) | |
| Regulated Target | Histone H3 lysine 9 trimethylation (H3K9me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Disease | Acute myeloid leukaemia | |
| Crosstalk ID: M6ACROT03263 | ||
| Epigenetic Regulator | Histone-lysine N-methyltransferase 2A (KMT2A) | |
| Regulated Target | Histone H3 lysine 4 trimethylation (H3K4me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Disease | Acute myeloid leukaemia | |
| Crosstalk ID: M6ACROT03267 | ||
| Epigenetic Regulator | Histone-lysine N-methyltransferase 2C (KMT2C) | |
| Regulated Target | Histone H3 lysine 4 trimethylation (H3K4me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Disease | Acute myeloid leukaemia | |
| Crosstalk ID: M6ACROT03271 | ||
| Epigenetic Regulator | Lysine-specific demethylase 4B (KDM4B) | |
| Regulated Target | Histone H3 lysine 9 trimethylation (H3K9me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Disease | Acute myeloid leukaemia | |
| Crosstalk ID: M6ACROT03275 | ||
| Epigenetic Regulator | Probable JmjC domain-containing histone demethylation protein 2C (JMJD1C) | |
| Regulated Target | Histone H3 lysine 9 trimethylation (H3K9me3) | |
| Crosstalk relationship | Histone modification → m6A | |
| Disease | Acute myeloid leukaemia | |
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01054)
| In total 1 m6A sequence/site(s) in this target gene | |||
| mod ID: AC4SITE000041 | Click to Show/Hide the Full List | ||
| mod site | chr20:3221894-3221895:+ | [2] | |
| Sequence | TTGGCTGGGACCCCTGCTTTCAGCCTGATGGATATGAGCAG | ||
| Cell/Tissue List | H1 | ||
| Seq Type List | ac4C-seq | ||
| Transcript ID List | ENST00000460550.5; ENST00000461029.1; ENST00000472295.1; ENST00000490838.6; ENST00000455664.6; ENST00000399838.3; ENST00000483354.5; ENST00000380113.8 | ||
| External Link | RMBase: ac4C_site_1186 | ||
Adenosine-to-Inosine editing (A-to-I)
| In total 14 m6A sequence/site(s) in this target gene | |||
| mod ID: A2ISITE010334 | Click to Show/Hide the Full List | ||
| mod site | chr20:3219346-3219347:+ | [3] | |
| Sequence | GGCCAGGTTTGGTGATTTACACCTGTAATCCTAGCACTTTG | ||
| Transcript ID List | rmsk_5052374; ENST00000399838.3; ENST00000490838.6; ENST00000461029.1; ENST00000460550.5; ENST00000380113.8; ENST00000455664.6; ENST00000483354.5 | ||
| External Link | RMBase: RNA-editing_site_85156 | ||
| mod ID: A2ISITE010335 | Click to Show/Hide the Full List | ||
| mod site | chr20:3219393-3219394:+ | [4] | |
| Sequence | CCCAGCGGGAGGCTTTCTTGAGCCCAGGTGTTCAAGATCAG | ||
| Transcript ID List | ENST00000461029.1; ENST00000460550.5; rmsk_5052374; ENST00000455664.6; ENST00000483354.5; ENST00000380113.8; ENST00000490838.6; ENST00000399838.3 | ||
| External Link | RMBase: RNA-editing_site_85157 | ||
| mod ID: A2ISITE010336 | Click to Show/Hide the Full List | ||
| mod site | chr20:3219398-3219399:+ | [4] | |
| Sequence | CGGGAGGCTTTCTTGAGCCCAGGTGTTCAAGATCAGCCTGG | ||
| Transcript ID List | ENST00000399838.3; ENST00000460550.5; ENST00000380113.8; ENST00000455664.6; ENST00000490838.6; rmsk_5052374; ENST00000483354.5; ENST00000461029.1 | ||
| External Link | RMBase: RNA-editing_site_85158 | ||
| mod ID: A2ISITE010337 | Click to Show/Hide the Full List | ||
| mod site | chr20:3219406-3219407:+ | [4] | |
| Sequence | TTTCTTGAGCCCAGGTGTTCAAGATCAGCCTGGACACCATA | ||
| Transcript ID List | ENST00000483354.5; ENST00000399838.3; ENST00000461029.1; ENST00000380113.8; ENST00000455664.6; ENST00000460550.5; ENST00000490838.6; rmsk_5052374 | ||
| External Link | RMBase: RNA-editing_site_85159 | ||
| mod ID: A2ISITE010338 | Click to Show/Hide the Full List | ||
| mod site | chr20:3219437-3219438:+ | [4] | |
| Sequence | GGACACCATAACAAGACCCCATCTTTGCAAAAAATTTTAAA | ||
| Transcript ID List | ENST00000460550.5; ENST00000399838.3; rmsk_5052374; ENST00000380113.8; ENST00000490838.6; ENST00000483354.5; ENST00000461029.1; ENST00000455664.6 | ||
| External Link | RMBase: RNA-editing_site_85160 | ||
| mod ID: A2ISITE010339 | Click to Show/Hide the Full List | ||
| mod site | chr20:3219836-3219837:+ | [3] | |
| Sequence | CAGGAGGATTGCTTGAGGCCAGGAGTTTGAGACCAGCCTGG | ||
| Transcript ID List | ENST00000399838.3; ENST00000490838.6; ENST00000460550.5; ENST00000455664.6; ENST00000461029.1; rmsk_5052376; ENST00000380113.8; ENST00000483354.5 | ||
| External Link | RMBase: RNA-editing_site_85161 | ||
| mod ID: A2ISITE010340 | Click to Show/Hide the Full List | ||
| mod site | chr20:3219920-3219921:+ | [5] | |
| Sequence | ACATGGTGGTGCACACCTGTAGTCCTAGCTACTTGGGAGGC | ||
| Transcript ID List | ENST00000460550.5; ENST00000490838.6; ENST00000380113.8; ENST00000455664.6; ENST00000483354.5; ENST00000461029.1; rmsk_5052376; ENST00000399838.3 | ||
| External Link | RMBase: RNA-editing_site_85162 | ||
| mod ID: A2ISITE010341 | Click to Show/Hide the Full List | ||
| mod site | chr20:3220186-3220187:+ | [4] | |
| Sequence | GATCTCCCACCCTGGAGAGTAACTGGGACTACAGGCGTGCA | ||
| Transcript ID List | ENST00000380113.8; ENST00000461029.1; ENST00000483354.5; ENST00000399838.3; ENST00000460550.5; ENST00000490838.6; ENST00000455664.6 | ||
| External Link | RMBase: RNA-editing_site_85163 | ||
| mod ID: A2ISITE010342 | Click to Show/Hide the Full List | ||
| mod site | chr20:3220257-3220258:+ | [4] | |
| Sequence | GGTAGAGACAGGGTTTCACTATGTTGCCCAGGCTGGTCTTG | ||
| Transcript ID List | ENST00000399838.3; ENST00000455664.6; ENST00000490838.6; ENST00000483354.5; ENST00000460550.5; ENST00000461029.1; ENST00000380113.8 | ||
| External Link | RMBase: RNA-editing_site_85164 | ||
| mod ID: A2ISITE010343 | Click to Show/Hide the Full List | ||
| mod site | chr20:3220292-3220293:+ | [4] | |
| Sequence | GTCTTGAACTCCCGACCTTAAGTGATCCGCTGGCCTCATTC | ||
| Transcript ID List | ENST00000460550.5; ENST00000455664.6; ENST00000490838.6; ENST00000483354.5; ENST00000399838.3; ENST00000461029.1; ENST00000380113.8 | ||
| External Link | RMBase: RNA-editing_site_85165 | ||
| mod ID: A2ISITE010344 | Click to Show/Hide the Full List | ||
| mod site | chr20:3220648-3220649:+ | [4] | |
| Sequence | GCCTTGATCTCTCAGGCTCAAGTCATCCTCCCACCTCAGCC | ||
| Transcript ID List | ENST00000399838.3; ENST00000461029.1; ENST00000460550.5; ENST00000483354.5; ENST00000455664.6; ENST00000490838.6; ENST00000380113.8 | ||
| External Link | RMBase: RNA-editing_site_85166 | ||
| mod ID: A2ISITE010345 | Click to Show/Hide the Full List | ||
| mod site | chr20:3220681-3220682:+ | [4] | |
| Sequence | CCTCAGCCTTCCGAGTAGCTAGGACCTCAGGTGTGAGCTAC | ||
| Transcript ID List | ENST00000490838.6; ENST00000399838.3; ENST00000461029.1; ENST00000483354.5; ENST00000460550.5; ENST00000455664.6; ENST00000380113.8 | ||
| External Link | RMBase: RNA-editing_site_85167 | ||
| mod ID: A2ISITE010346 | Click to Show/Hide the Full List | ||
| mod site | chr20:3220744-3220745:+ | [4] | |
| Sequence | AAAAAAAAATTGGTAGAGATAGAGTCTGACTGTGTTGCCCA | ||
| Transcript ID List | ENST00000460550.5; ENST00000483354.5; ENST00000399838.3; ENST00000455664.6; ENST00000380113.8; ENST00000490838.6; ENST00000461029.1 | ||
| External Link | RMBase: RNA-editing_site_85168 | ||
| mod ID: A2ISITE010347 | Click to Show/Hide the Full List | ||
| mod site | chr20:3220824-3220825:+ | [4] | |
| Sequence | CTCGGCCTCCCCAAGCGCTGAGATTACAGGCGTGAGCTACC | ||
| Transcript ID List | ENST00000455664.6; ENST00000461029.1; ENST00000490838.6; ENST00000399838.3; ENST00000483354.5; ENST00000460550.5; ENST00000380113.8 | ||
| External Link | RMBase: RNA-editing_site_85169 | ||
N1-methyladenosine (m1A)
| In total 1 m6A sequence/site(s) in this target gene | |||
| mod ID: M1ASITE000077 | Click to Show/Hide the Full List | ||
| mod site | chr20:3223585-3223586:+ | [6] | |
| Sequence | TCCCCTTTGTGAGGGTGTCGAGTAGCCTCACCGGCCTGTCT | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | m1A-seq | ||
| Transcript ID List | ENST00000460550.5; ENST00000483354.5; ENST00000455664.6; ENST00000380113.8; ENST00000399838.3; ENST00000472295.1; ENST00000490838.6 | ||
| External Link | RMBase: m1A_site_617 | ||
5-methylcytidine (m5C)
N6-methyladenosine (m6A)
| In total 14 m6A sequence/site(s) in this target gene | |||
| mod ID: M6ASITE051160 | Click to Show/Hide the Full List | ||
| mod site | chr20:3208870-3208871:+ | [7] | |
| Sequence | TATCAGCAGAGGTTCAGCAGACCCACCTTTGAGAGGGCACT | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | Huh7 | ||
| Seq Type List | MeRIP-seq | ||
| Transcript ID List | ENST00000483354.5 | ||
| External Link | RMBase: m6A_site_521082 | ||
| mod ID: M6ASITE051161 | Click to Show/Hide the Full List | ||
| mod site | chr20:3208993-3208994:+ | [8] | |
| Sequence | GAGGGATGAGGAAGTGAGGAACTCTACATACTGAGCTCTCA | ||
| Motif Score | 3.373380952 | ||
| Cell/Tissue List | HEK293T; HepG2; A549; Huh7; HEK293A-TOA; TREX | ||
| Seq Type List | MeRIP-seq; m6A-seq | ||
| Transcript ID List | ENST00000460676.5; ENST00000483354.5 | ||
| External Link | RMBase: m6A_site_521083 | ||
| mod ID: M6ASITE051162 | Click to Show/Hide the Full List | ||
| mod site | chr20:3218546-3218547:+ | [9] | |
| Sequence | GCTCCTGGCCGGGTTCGAGGACAAGTCAGCCTATGCGCTCT | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | HepG2 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000380113.8; ENST00000460676.5; ENST00000461029.1; ENST00000460550.5; ENST00000609835.5; ENST00000455664.6; ENST00000399838.3; ENST00000483354.5; ENST00000490838.6 | ||
| External Link | RMBase: m6A_site_521084 | ||
| mod ID: M6ASITE051163 | Click to Show/Hide the Full List | ||
| mod site | chr20:3218591-3218592:+ | [9] | |
| Sequence | GTTTGCACTCAGCACCGGGGACCCAAGCCAGCCCGTGCGCC | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HepG2 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000461029.1; ENST00000460550.5; ENST00000483354.5; ENST00000455664.6; ENST00000490838.6; ENST00000460676.5; ENST00000609835.5; ENST00000399838.3; ENST00000380113.8 | ||
| External Link | RMBase: m6A_site_521085 | ||
| mod ID: M6ASITE051164 | Click to Show/Hide the Full List | ||
| mod site | chr20:3218626-3218627:+ | [9] | |
| Sequence | TGCGCCTGTTCAGGGGCCGGACCTCGGTGCGTACCCACCTT | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HepG2 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000609835.5; ENST00000380113.8; ENST00000460550.5; ENST00000399838.3; ENST00000483354.5; ENST00000455664.6; ENST00000490838.6; ENST00000461029.1 | ||
| External Link | RMBase: m6A_site_521086 | ||
| mod ID: M6ASITE051165 | Click to Show/Hide the Full List | ||
| mod site | chr20:3218880-3218881:+ | [9] | |
| Sequence | GAGGGGTGCCCCTGGGCAGGACAATGGAAGTGTTGTCAATT | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | HepG2 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000380113.8; ENST00000460550.5; ENST00000483354.5; ENST00000490838.6; ENST00000461029.1; ENST00000455664.6; ENST00000609835.5; ENST00000399838.3 | ||
| External Link | RMBase: m6A_site_521087 | ||
| mod ID: M6ASITE051166 | Click to Show/Hide the Full List | ||
| mod site | chr20:3218906-3218907:+ | [9] | |
| Sequence | GAAGTGTTGTCAATTCTGAAACCTGTTTGACCCCTGAGGCT | ||
| Motif Score | 2.185083333 | ||
| Cell/Tissue List | HepG2 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000380113.8; ENST00000609835.5; ENST00000399838.3; ENST00000460550.5; ENST00000461029.1; ENST00000455664.6; ENST00000483354.5; ENST00000490838.6 | ||
| External Link | RMBase: m6A_site_521088 | ||
| mod ID: M6ASITE051167 | Click to Show/Hide the Full List | ||
| mod site | chr20:3218941-3218942:+ | [9] | |
| Sequence | GAGGCTGTTGTTTCAGGGAAACAGTTGGCTAACAGCTCCTG | ||
| Motif Score | 2.20572619 | ||
| Cell/Tissue List | HepG2 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000455664.6; ENST00000483354.5; ENST00000461029.1; ENST00000380113.8; ENST00000609835.5; ENST00000460550.5; ENST00000490838.6; ENST00000399838.3 | ||
| External Link | RMBase: m6A_site_521089 | ||
| mod ID: M6ASITE051168 | Click to Show/Hide the Full List | ||
| mod site | chr20:3221871-3221872:+ | [10] | |
| Sequence | GGCACCCAGAGGCTGCCAGGACTTTGGCTGGGACCCCTGCT | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000483354.5; ENST00000380113.8; ENST00000461029.1; ENST00000490838.6; ENST00000472295.1; ENST00000399838.3; ENST00000460550.5; ENST00000455664.6 | ||
| External Link | RMBase: m6A_site_521090 | ||
| mod ID: M6ASITE051169 | Click to Show/Hide the Full List | ||
| mod site | chr20:3221883-3221884:+ | [10] | |
| Sequence | CTGCCAGGACTTTGGCTGGGACCCCTGCTTTCAGCCTGATG | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000483354.5; ENST00000490838.6; ENST00000399838.3; ENST00000461029.1; ENST00000380113.8; ENST00000472295.1; ENST00000455664.6; ENST00000460550.5 | ||
| External Link | RMBase: m6A_site_521091 | ||
| mod ID: M6ASITE051170 | Click to Show/Hide the Full List | ||
| mod site | chr20:3223518-3223519:+ | [10] | |
| Sequence | CTGGGGAGGGCTAGCCCAAAACCTCCCGCATCGGGCAGGCA | ||
| Motif Score | 2.185083333 | ||
| Cell/Tissue List | HeLa; HepG2; endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000455664.6; ENST00000460550.5; ENST00000472295.1; ENST00000490838.6; ENST00000380113.8; ENST00000399838.3; ENST00000483354.5 | ||
| External Link | RMBase: m6A_site_521092 | ||
| mod ID: M6ASITE051171 | Click to Show/Hide the Full List | ||
| mod site | chr20:3223634-3223635:+ | [11] | |
| Sequence | AGCTGGCTCTGCTCTGAGAAACTCTGGCAAGTGGACGCCAT | ||
| Motif Score | 2.627720238 | ||
| Cell/Tissue List | HepG2; endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000472295.1; ENST00000399838.3; ENST00000460550.5; ENST00000380113.8; ENST00000483354.5; ENST00000490838.6 | ||
| External Link | RMBase: m6A_site_521093 | ||
| mod ID: M6ASITE051172 | Click to Show/Hide the Full List | ||
| mod site | chr20:3223716-3223717:+ | [10] | |
| Sequence | AGGCCTGGGGTCCTGAAAGGACCTTGGGTGGTAAAGCTGTA | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000472295.1; ENST00000483354.5; ENST00000490838.6; ENST00000399838.3; ENST00000380113.8; ENST00000460550.5 | ||
| External Link | RMBase: m6A_site_521094 | ||
| mod ID: M6ASITE051173 | Click to Show/Hide the Full List | ||
| mod site | chr20:3223736-3223737:+ | [12] | |
| Sequence | ACCTTGGGTGGTAAAGCTGTACTTGGTGGGAGTGAGGGCGT | ||
| Motif Score | 3.278136905 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000472295.1; ENST00000380113.8; ENST00000460550.5; ENST00000483354.5; ENST00000399838.3; ENST00000490838.6 | ||
| External Link | RMBase: m6A_site_521095 | ||
References